Wall clock time and date at job start Mon Mar 30 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 O 1.21277 * 119.99833 * 119.99582 * 4 2 1 6 6 N 1.34773 * 120.00068 * 299.99925 * 4 2 1 7 7 C 1.47064 * 136.05866 * 359.62708 * 6 4 2 8 8 C 1.53233 * 88.08623 * 207.20750 * 7 6 4 9 9 C 1.47066 * 136.05699 * 179.97438 * 6 4 2 10 10 H 1.08996 * 113.47197 * 267.61884 * 9 6 4 11 11 C 1.52999 * 113.46918 * 38.00651 * 9 6 4 12 12 C 1.50703 * 109.47294 * 294.99946 * 11 9 6 13 13 H 1.08001 * 119.99132 * 359.97438 * 12 11 9 14 14 C 1.37868 * 120.00281 * 179.97438 * 12 11 9 15 15 N 1.31515 * 120.00050 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00040 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47658 * 89.99835 * 16 14 12 18 18 H 1.48507 * 109.47079 * 209.99596 * 16 14 12 19 19 H 1.48503 * 109.47308 * 329.99466 * 16 14 12 20 20 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 27 27 H 1.09004 * 113.46986 * 321.93783 * 7 6 4 28 28 H 1.09001 * 113.47273 * 92.37467 * 7 6 4 29 29 H 1.09001 * 114.33008 * 220.47609 * 8 7 6 30 30 H 1.09001 * 114.20369 * 87.72384 * 8 7 6 31 31 H 1.09001 * 109.47093 * 54.99404 * 11 9 6 32 32 H 1.08999 * 109.47609 * 174.99776 * 11 9 6 33 33 H 0.97004 * 119.99951 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -0.1209 -2.0288 6 7 1.7068 -2.0007 -1.4438 7 6 0.9213 -3.0250 -0.7392 8 6 1.8034 -4.0862 -1.4053 9 6 1.9857 -3.0057 -2.4805 10 1 1.2296 -3.0419 -3.2647 11 6 3.4097 -2.9301 -3.0350 12 6 3.5991 -1.6204 -3.7562 13 1 2.7850 -0.9131 -3.8136 14 6 4.8115 -1.3254 -4.3425 15 7 4.9766 -0.1827 -4.9723 16 14 6.2192 -2.5492 -4.2438 17 1 6.1601 -3.4670 -5.4098 18 1 7.5120 -1.8185 -4.2541 19 1 6.1048 -3.3351 -2.9890 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.0325 -2.9882 0.3446 28 1 -0.1211 -3.0663 -1.0551 29 1 1.2634 -4.9694 -1.7466 30 1 2.7118 -4.3239 -0.8517 31 1 4.1234 -2.9993 -2.2141 32 1 3.5736 -3.7542 -3.7294 33 1 5.8295 0.0248 -5.3852 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260229721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:05 Heat of formation + Delta-G solvation = 1.378783 kcal Electronic energy + Delta-G solvation = -14711.668523 eV Core-core repulsion = 12353.008202 eV Total energy + Delta-G solvation = -2358.660321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.83733 -37.26944 -33.96715 -32.54995 -29.89852 -28.86218 -26.80634 -24.56539 -23.27744 -21.27936 -20.26850 -17.94198 -16.88764 -15.88669 -15.38280 -14.91725 -14.35684 -13.80338 -13.24036 -12.93191 -12.65690 -12.35673 -12.06422 -11.92333 -11.78332 -11.51021 -11.33904 -11.17284 -10.90963 -10.79171 -10.69304 -10.28671 -9.81368 -9.32435 -9.03028 -8.30995 -8.04491 -7.82089 -5.68917 -3.59825 3.43252 3.51016 3.52344 3.54827 3.65899 4.68664 4.86048 4.92713 5.16119 5.26177 5.42504 5.56841 5.59509 5.61165 5.79217 5.83783 5.94854 5.96103 6.04882 6.08439 6.10551 6.40983 6.47818 6.52733 6.64507 6.71528 7.22186 7.48384 8.01849 8.66421 8.84896 9.20620 9.54276 9.90965 11.45059 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.031212 B = 0.011817 C = 0.009288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.884045 B = 2368.844274 C = 3014.065834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C -0.130 4.130 4 C 0.518 3.482 5 O -0.462 6.462 6 N -0.639 5.639 7 C 0.100 3.900 8 C -0.162 4.162 9 C 0.151 3.849 10 H 0.078 0.922 11 C -0.021 4.021 12 C -0.479 4.479 13 H 0.093 0.907 14 C 0.063 3.937 15 N -0.906 5.906 16 Si 0.865 3.135 17 H -0.282 1.282 18 H -0.292 1.292 19 H -0.271 1.271 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.016 0.984 32 H 0.020 0.980 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 -5.024 11.718 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.188 4.188 4 C 0.304 3.696 5 O -0.331 6.331 6 N -0.379 5.379 7 C -0.024 4.024 8 C -0.200 4.200 9 C 0.049 3.951 10 H 0.096 0.904 11 C -0.059 4.059 12 C -0.518 4.518 13 H 0.111 0.889 14 C -0.136 4.136 15 N -0.547 5.547 16 Si 0.694 3.306 17 H -0.208 1.208 18 H -0.218 1.218 19 H -0.196 1.196 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.035 0.965 32 H 0.038 0.962 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.073 -4.307 11.204 15.046 hybrid contribution 0.832 -0.668 0.105 1.072 sum -8.241 -4.975 11.309 14.851 Atomic orbital electron populations 1.21758 0.93924 1.02002 1.02070 1.21256 0.96811 0.97687 0.97426 1.21583 1.02039 0.93795 1.01364 1.20079 0.81693 0.79969 0.87813 1.91076 1.34169 1.63257 1.44634 1.49653 1.52270 1.09652 1.26281 1.22742 0.95745 0.86447 0.97483 1.23527 1.00322 0.96687 0.99480 1.22554 0.99934 0.82200 0.90457 0.90377 1.19822 0.90953 0.98763 0.96372 1.21274 1.00112 1.00230 1.30147 0.88912 1.24923 0.97890 0.94897 0.95885 1.69922 1.24190 1.22812 1.37752 0.87026 0.83118 0.82055 0.78398 1.20780 1.21800 1.19644 0.92316 0.92430 0.92317 0.89864 0.91920 0.92916 0.91877 0.91602 0.90882 0.90348 0.89369 0.96544 0.96208 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.08 37.16 0.34 -1.41 16 2 C -0.11 -1.71 3.13 -91.77 -0.29 -2.00 16 3 C -0.13 -2.03 8.48 37.16 0.32 -1.71 16 4 C 0.52 10.90 7.31 -10.99 -0.08 10.82 16 5 O -0.46 -12.57 12.15 5.56 0.07 -12.50 16 6 N -0.64 -12.12 3.52 -177.62 -0.62 -12.74 16 7 C 0.10 1.32 6.72 -8.65 -0.06 1.26 16 8 C -0.16 -2.30 8.01 -26.34 -0.21 -2.51 16 9 C 0.15 2.98 4.03 -72.39 -0.29 2.68 16 10 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 11 C -0.02 -0.53 4.04 -27.88 -0.11 -0.64 16 12 C -0.48 -14.49 7.25 -34.44 -0.25 -14.74 16 13 H 0.09 3.11 6.05 -52.49 -0.32 2.79 16 14 C 0.06 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.91 -30.19 13.96 55.43 0.77 -29.41 16 16 Si 0.87 23.11 27.47 -169.99 -4.67 18.44 16 17 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 19 H -0.27 -6.98 6.54 56.52 0.37 -6.61 16 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.06 0.66 6.35 -51.93 -0.33 0.33 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 31 H 0.02 0.42 7.14 -51.93 -0.37 0.05 16 32 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 33 H 0.25 8.00 8.31 -40.82 -0.34 7.67 16 LS Contribution 266.14 15.07 4.01 4.01 Total: -1.00 -36.26 266.14 -6.40 -42.66 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -5.22 Total: -4.06 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -0.74 Total: -6.39 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.15 Total: -42.16 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.07 Total: -12.50 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.67 Total: 18.44 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -36.26 -6.40 -42.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.037 kcal (2) G-P(sol) polarization free energy of solvation -36.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds