Wall clock time and date at job start Mon Mar 30 2020 03:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47075 * 2 1 4 4 H 1.08999 * 109.47386 * 305.66964 * 3 2 1 5 5 C 1.53001 * 109.47213 * 65.67190 * 3 2 1 6 6 C 1.50700 * 109.47146 * 61.98420 * 5 3 2 7 7 H 1.08000 * 119.99912 * 354.74395 * 6 5 3 8 8 C 1.37875 * 119.99769 * 174.73955 * 6 5 3 9 9 N 1.31512 * 120.00191 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99890 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47296 * 270.00061 * 10 8 6 12 12 H 1.48501 * 109.47329 * 149.99716 * 10 8 6 13 13 H 1.48504 * 109.47188 * 30.00202 * 10 8 6 14 14 C 1.53001 * 109.46908 * 185.66762 * 3 2 1 15 15 H 1.08997 * 110.86115 * 300.70165 * 14 3 2 16 16 C 1.54480 * 110.96937 * 64.49569 * 14 3 2 17 17 N 1.46820 * 105.44931 * 143.50790 * 16 14 3 18 18 C 1.34416 * 111.31323 * 343.03226 * 17 16 14 19 19 O 1.21279 * 124.94586 * 180.41477 * 18 17 16 20 20 C 1.51285 * 110.11771 * 0.37831 * 18 17 16 21 21 H 1.09000 * 109.46867 * 293.94060 * 1 2 3 22 22 H 1.09005 * 109.47043 * 53.93873 * 1 2 3 23 23 H 1.08994 * 109.47001 * 173.94010 * 1 2 3 24 24 H 1.08997 * 109.47090 * 239.99912 * 2 1 3 25 25 H 1.08996 * 109.46748 * 119.99970 * 2 1 3 26 26 H 1.09004 * 109.47098 * 301.98881 * 5 3 2 27 27 H 1.08996 * 109.47462 * 181.98671 * 5 3 2 28 28 H 0.96999 * 119.99865 * 0.02562 * 9 8 6 29 29 H 1.09010 * 110.24458 * 262.53652 * 16 14 3 30 30 H 1.09007 * 110.24824 * 24.52617 * 16 14 3 31 31 H 0.96993 * 124.33702 * 163.00345 * 17 16 14 32 32 H 1.09004 * 110.48801 * 257.57551 * 20 18 17 33 33 H 1.09001 * 110.59998 * 134.98272 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5962 1.9848 -0.8348 5 6 1.6498 2.1214 1.3144 6 6 2.3031 1.4007 2.4654 7 1 2.8638 0.4950 2.2871 8 6 2.1850 1.8976 3.7461 9 7 1.5028 3.0007 3.9631 10 14 2.9954 1.0046 5.1727 11 1 2.0474 0.0108 5.7374 12 1 3.3681 1.9857 6.2233 13 1 4.2152 0.3074 4.6916 14 6 3.5634 1.4448 -0.1425 15 1 4.0306 0.8968 0.6758 16 6 3.9916 0.8677 -1.5099 17 7 5.1597 1.6574 -1.9192 18 6 5.2473 2.8002 -1.2169 19 8 6.1122 3.6384 -1.3590 20 6 4.1094 2.8892 -0.2240 21 1 -0.3633 0.4170 0.9393 22 1 -0.3633 0.6050 -0.8308 23 1 -0.3633 -1.0219 -0.1085 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5667 2.0884 1.4328 27 1 1.9822 3.1594 1.3000 28 1 1.0823 3.4646 3.2223 29 1 4.2630 -0.1831 -1.4076 30 1 3.1866 0.9811 -2.2361 31 1 5.7878 1.3887 -2.6077 32 1 3.3383 3.5686 -0.5873 33 1 4.4749 3.2143 0.7501 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260286446.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:29 Heat of formation + Delta-G solvation = -89.363947 kcal Electronic energy + Delta-G solvation = -14493.150507 eV Core-core repulsion = 12130.555286 eV Total energy + Delta-G solvation = -2362.595221 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.38632 -38.63808 -36.50967 -34.49726 -32.23815 -29.68370 -28.73757 -26.15533 -24.53068 -22.48207 -21.44364 -20.83170 -18.47433 -18.12210 -17.25288 -16.23531 -15.78201 -15.55279 -15.19470 -14.69416 -14.58472 -14.22362 -13.87443 -13.78564 -13.07700 -13.01343 -12.62604 -12.38075 -12.30969 -11.99618 -11.92879 -11.59934 -11.49766 -10.92122 -10.75926 -10.40212 -10.33634 -10.07617 -8.50388 -6.18234 1.50987 1.55172 1.63164 1.78218 2.45404 2.63233 3.31185 3.48053 3.64818 3.84560 4.16749 4.36353 4.44017 4.54838 4.66435 4.72965 4.79435 4.94183 5.02354 5.03813 5.13560 5.29686 5.39443 5.46742 5.61873 5.66494 5.70130 5.84773 5.99577 6.22143 6.38244 6.77629 7.24347 7.60579 8.89990 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.025412 B = 0.010679 C = 0.008643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.580954 B = 2621.412865 C = 3238.775014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.056 4.056 4 H 0.064 0.936 5 C 0.011 3.989 6 C -0.578 4.578 7 H 0.060 0.940 8 C -0.045 4.045 9 N -0.951 5.951 10 Si 1.106 2.894 11 H -0.277 1.277 12 H -0.295 1.295 13 H -0.267 1.267 14 C -0.078 4.078 15 H 0.081 0.919 16 C 0.109 3.891 17 N -0.714 5.714 18 C 0.518 3.482 19 O -0.591 6.591 20 C -0.145 4.145 21 H 0.026 0.974 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.052 0.948 26 H -0.011 1.011 27 H -0.015 1.015 28 H 0.254 0.746 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.419 0.581 32 H 0.099 0.901 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 -8.715 -11.570 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.074 4.074 4 H 0.082 0.918 5 C -0.026 4.026 6 C -0.616 4.616 7 H 0.078 0.922 8 C -0.242 4.242 9 N -0.591 5.591 10 Si 0.930 3.070 11 H -0.203 1.203 12 H -0.221 1.221 13 H -0.192 1.192 14 C -0.097 4.097 15 H 0.099 0.901 16 C -0.015 4.015 17 N -0.369 5.369 18 C 0.306 3.694 19 O -0.472 6.472 20 C -0.186 4.186 21 H 0.046 0.954 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.101 0.899 25 H 0.071 0.929 26 H 0.008 0.992 27 H 0.003 0.997 28 H 0.064 0.936 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.259 0.741 32 H 0.118 0.882 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.516 -8.247 -9.948 13.165 hybrid contribution -0.227 0.467 -1.416 1.508 sum 2.289 -7.780 -11.364 13.961 Atomic orbital electron populations 1.21711 0.96505 1.01427 1.00587 1.21476 0.95611 0.95515 1.01894 1.20986 0.92620 0.97102 0.96739 0.91809 1.19249 0.94596 0.94500 0.94224 1.22372 1.34233 1.11338 0.93659 0.92164 1.27052 0.96802 0.96736 1.03575 1.70880 1.34512 1.18533 1.35144 0.83062 0.76123 0.74702 0.73153 1.20305 1.22100 1.19218 1.22028 0.96805 0.93550 0.97296 0.90099 1.22420 0.87382 0.96340 0.95334 1.46158 1.29875 1.21010 1.39859 1.21153 0.85289 0.81137 0.81838 1.90675 1.40696 1.44770 1.71092 1.22269 0.97014 1.00491 0.98788 0.95430 0.92451 0.91794 0.89883 0.92901 0.99247 0.99676 0.93618 0.87626 0.88853 0.74132 0.88235 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.53 71.98 0.69 -3.53 16 2 C -0.11 -3.15 5.17 30.60 0.16 -2.99 16 3 C -0.06 -1.86 1.47 -10.79 -0.02 -1.88 16 4 H 0.06 1.93 8.11 -2.39 -0.02 1.91 16 5 C 0.01 0.52 3.71 29.85 0.11 0.63 16 6 C -0.58 -29.66 7.59 25.60 0.19 -29.46 16 7 H 0.06 2.95 5.75 -2.91 -0.02 2.93 16 8 C -0.05 -2.51 5.46 84.65 0.46 -2.05 16 9 N -0.95 -58.17 13.65 21.45 0.29 -57.88 16 10 Si 1.11 49.62 29.90 68.60 2.05 51.67 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 13 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 14 C -0.08 -2.40 2.33 -9.74 -0.02 -2.42 16 15 H 0.08 2.83 6.73 -2.39 -0.02 2.82 16 16 C 0.11 2.26 6.33 86.82 0.55 2.81 16 17 N -0.71 -17.04 6.24 -459.67 -2.87 -19.91 16 18 C 0.52 17.43 8.43 87.90 0.74 18.17 16 19 O -0.59 -24.61 18.03 -3.03 -0.05 -24.67 16 20 C -0.15 -5.04 5.47 30.59 0.17 -4.87 16 21 H 0.03 0.98 6.84 -2.39 -0.02 0.96 16 22 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.08 1.77 7.27 -2.39 -0.02 1.76 16 25 H 0.05 1.80 6.49 -2.39 -0.02 1.78 16 26 H -0.01 -0.54 6.63 -2.39 -0.02 -0.56 16 27 H -0.02 -0.77 7.09 -2.39 -0.02 -0.79 16 28 H 0.25 15.73 7.18 -92.71 -0.67 15.06 16 29 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.09 1.60 7.87 -2.38 -0.02 1.59 16 31 H 0.42 7.80 8.96 -92.71 -0.83 6.97 16 32 H 0.10 3.38 7.85 -2.38 -0.02 3.36 16 33 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -67.89 263.99 2.83 -65.06 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.37 Total: 11.31 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 3.03 Total: -25.59 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.58 Total: -77.79 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.67 kcal Total: -67.89 2.83 -65.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260286446.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.300 kcal (2) G-P(sol) polarization free energy of solvation -67.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds