Wall clock time and date at job start Mon Mar 30 2020 03:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46710 * 2 1 4 4 H 1.08995 * 109.46773 * 307.79290 * 3 2 1 5 5 C 1.52992 * 109.47247 * 67.79630 * 3 2 1 6 6 C 1.50700 * 109.47328 * 291.35142 * 5 3 2 7 7 H 1.08000 * 119.99915 * 0.37923 * 6 5 3 8 8 C 1.37879 * 120.00471 * 180.38182 * 6 5 3 9 9 N 1.31510 * 119.99699 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00052 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47512 * 359.97438 * 10 8 6 12 12 H 1.48509 * 109.47154 * 120.00022 * 10 8 6 13 13 H 1.48498 * 109.47093 * 239.99417 * 10 8 6 14 14 C 1.52999 * 109.46703 * 187.79918 * 3 2 1 15 15 H 1.09004 * 110.27852 * 186.97391 * 14 3 2 16 16 C 1.54471 * 110.24985 * 65.00225 * 14 3 2 17 17 C 1.54637 * 101.79824 * 215.60131 * 16 14 3 18 18 C 1.51279 * 104.19403 * 24.77452 * 17 16 14 19 19 O 1.21283 * 124.94156 * 163.78259 * 18 17 16 20 20 N 1.34422 * 110.11829 * 343.75180 * 18 17 16 21 21 H 1.09008 * 109.46568 * 165.19229 * 1 2 3 22 22 H 1.09003 * 109.47097 * 285.19053 * 1 2 3 23 23 H 1.08997 * 109.47376 * 45.19892 * 1 2 3 24 24 H 1.08996 * 109.47123 * 240.00273 * 2 1 3 25 25 H 1.08996 * 109.47386 * 119.99555 * 2 1 3 26 26 H 1.08998 * 109.47125 * 51.35114 * 5 3 2 27 27 H 1.08997 * 109.47439 * 171.35210 * 5 3 2 28 28 H 0.96998 * 120.00100 * 180.02562 * 9 8 6 29 29 H 1.08996 * 110.97629 * 97.45964 * 16 14 3 30 30 H 1.09004 * 110.96613 * 333.73146 * 16 14 3 31 31 H 1.08995 * 110.48596 * 143.45677 * 17 16 14 32 32 H 1.08996 * 110.48450 * 265.96401 * 17 16 14 33 33 H 0.97001 * 124.34726 * 179.58906 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5673 1.9950 -0.8121 5 6 1.6960 2.1051 1.3355 6 6 0.2039 2.2929 1.4336 7 1 -0.4356 1.9662 0.6269 8 6 -0.3447 2.8817 2.5530 9 7 0.4340 3.2791 3.5355 10 14 -2.1942 3.1137 2.6748 11 1 -2.8414 2.5858 1.4470 12 1 -2.7081 2.3810 3.8600 13 1 -2.5036 4.5594 2.8143 14 6 3.5574 1.4471 -0.1958 15 1 3.9509 2.4564 -0.0752 16 6 3.9178 0.8962 -1.5932 17 6 5.2320 0.1345 -1.3035 18 6 5.1445 -0.2102 0.1669 19 8 5.8303 -1.0382 0.7282 20 7 4.1966 0.5351 0.7610 21 1 -0.3633 -0.9936 -0.2627 22 1 -0.3633 0.2693 0.9918 23 1 -0.3634 0.7241 -0.7292 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 2.0370 1.4713 2.1540 27 1 2.1890 3.0752 1.3975 28 1 0.0480 3.6931 4.3232 29 1 4.0852 1.7078 -2.3012 30 1 3.1456 0.2178 -1.9560 31 1 5.2879 -0.7724 -1.9054 32 1 6.0937 0.7733 -1.4970 33 1 3.9643 0.4774 1.7010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260372807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:11 Heat of formation + Delta-G solvation = -56.051759 kcal Electronic energy + Delta-G solvation = -14479.383641 eV Core-core repulsion = 12118.232945 eV Total energy + Delta-G solvation = -2361.150696 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.15585 -37.09414 -34.62014 -32.22269 -31.04327 -29.18123 -27.38305 -24.51067 -22.13672 -21.46641 -20.32580 -18.98923 -16.91179 -16.17771 -16.07438 -14.76296 -14.48370 -14.09155 -13.51159 -13.33151 -13.02364 -12.61482 -12.31448 -12.22805 -11.53223 -11.35617 -11.11648 -11.00278 -10.81441 -10.50716 -10.44533 -10.10759 -9.80606 -9.56465 -9.12868 -8.82222 -8.57211 -8.36624 -6.04453 -4.03463 2.90268 3.27100 3.36025 3.38061 3.80090 4.41232 4.61530 4.74398 5.00890 5.31144 5.32940 5.54108 5.63575 5.74097 5.82922 5.91101 6.02846 6.21528 6.37252 6.53304 6.58589 6.71692 6.94285 7.00642 7.21157 7.35015 7.45188 7.59372 7.70091 7.94821 8.36846 8.60087 9.00519 9.58223 11.06999 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.047918 B = 0.008037 C = 0.007584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.187051 B = 3482.987185 C = 3690.891439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.093 4.093 4 H 0.073 0.927 5 C 0.027 3.973 6 C -0.521 4.521 7 H 0.074 0.926 8 C 0.055 3.945 9 N -0.895 5.895 10 Si 0.885 3.115 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.131 3.869 15 H 0.078 0.922 16 C -0.133 4.133 17 C -0.156 4.156 18 C 0.515 3.485 19 O -0.555 6.555 20 N -0.711 5.711 21 H 0.023 0.977 22 H 0.091 0.909 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.259 0.741 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -3.084 -9.734 11.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.137 4.137 3 C -0.112 4.112 4 H 0.092 0.908 5 C -0.010 4.010 6 C -0.559 4.559 7 H 0.092 0.908 8 C -0.146 4.146 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.211 1.211 14 C 0.026 3.974 15 H 0.096 0.904 16 C -0.171 4.171 17 C -0.196 4.196 18 C 0.301 3.699 19 O -0.434 6.434 20 N -0.366 5.366 21 H 0.042 0.958 22 H 0.110 0.890 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.640 -3.410 -9.393 11.017 hybrid contribution -1.175 0.315 0.629 1.370 sum 3.464 -3.095 -8.764 9.919 Atomic orbital electron populations 1.22183 0.95754 0.98282 1.04618 1.21355 0.96465 0.96088 0.99745 1.21649 0.90402 0.96837 1.02282 0.90826 1.19158 0.96862 0.95113 0.89826 1.21648 0.92566 1.38389 1.03307 0.90805 1.25032 0.97655 0.95763 0.96152 1.69969 1.34669 1.41301 1.07508 0.86637 0.86157 0.77800 0.78045 1.19661 1.21146 1.21146 1.21969 0.95435 0.92840 0.87119 0.90376 1.22791 0.96543 1.00628 0.97159 1.22319 0.99892 1.02595 0.94813 1.20863 0.79223 0.79967 0.89889 1.90709 1.46600 1.34831 1.71262 1.46411 1.37623 1.39539 1.12988 0.95756 0.89012 0.93369 0.94274 0.92870 0.96712 0.96626 0.93148 0.89683 0.89603 0.88695 0.88348 0.74719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.21 37.16 0.30 -2.44 16 2 C -0.10 -1.71 4.89 -26.73 -0.13 -1.84 16 3 C -0.09 -1.64 1.83 -90.62 -0.17 -1.81 16 4 H 0.07 1.29 7.99 -51.93 -0.41 0.88 16 5 C 0.03 0.63 4.26 -27.89 -0.12 0.51 16 6 C -0.52 -13.28 6.86 -34.44 -0.24 -13.52 16 7 H 0.07 1.80 4.74 -52.49 -0.25 1.55 16 8 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 9 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 10 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.13 1.95 3.20 -66.98 -0.21 1.73 16 15 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 16 C -0.13 -1.54 6.51 -25.10 -0.16 -1.70 16 17 C -0.16 -1.85 6.86 -26.74 -0.18 -2.03 16 18 C 0.51 8.39 8.43 -10.86 -0.09 8.30 16 19 O -0.55 -11.16 18.03 5.56 0.10 -11.06 16 20 N -0.71 -11.44 4.87 -52.73 -0.26 -11.70 16 21 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 22 H 0.09 1.93 5.75 -51.93 -0.30 1.64 16 23 H 0.05 0.86 7.16 -51.93 -0.37 0.49 16 24 H 0.04 0.59 6.18 -51.93 -0.32 0.27 16 25 H 0.05 0.98 7.67 -51.93 -0.40 0.58 16 26 H 0.01 0.36 7.44 -51.93 -0.39 -0.02 16 27 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.99 6.08 -51.93 -0.32 0.67 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.41 7.09 8.24 -40.82 -0.34 6.75 16 LS Contribution 261.92 15.07 3.95 3.95 Total: -1.00 -29.79 261.92 -6.35 -36.14 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.76 Total: 3.35 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.10 Total: -11.41 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.48 Total: -36.71 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.10 Total: -11.06 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.79 -6.35 -36.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.911 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds