Wall clock time and date at job start Mon Mar 30 2020 03:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46710 * 2 1 4 4 H 1.08995 * 109.46773 * 307.79290 * 3 2 1 5 5 C 1.52992 * 109.47247 * 67.79630 * 3 2 1 6 6 C 1.50700 * 109.47328 * 291.35142 * 5 3 2 7 7 H 1.08000 * 119.99915 * 0.37923 * 6 5 3 8 8 C 1.37879 * 120.00471 * 180.38182 * 6 5 3 9 9 N 1.31510 * 119.99699 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00052 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47512 * 359.97438 * 10 8 6 12 12 H 1.48509 * 109.47154 * 120.00022 * 10 8 6 13 13 H 1.48498 * 109.47093 * 239.99417 * 10 8 6 14 14 C 1.52999 * 109.46703 * 187.79918 * 3 2 1 15 15 H 1.09004 * 110.27852 * 186.97391 * 14 3 2 16 16 C 1.54471 * 110.24985 * 65.00225 * 14 3 2 17 17 C 1.54637 * 101.79824 * 215.60131 * 16 14 3 18 18 C 1.51279 * 104.19403 * 24.77452 * 17 16 14 19 19 O 1.21283 * 124.94156 * 163.78259 * 18 17 16 20 20 N 1.34422 * 110.11829 * 343.75180 * 18 17 16 21 21 H 1.09008 * 109.46568 * 165.19229 * 1 2 3 22 22 H 1.09003 * 109.47097 * 285.19053 * 1 2 3 23 23 H 1.08997 * 109.47376 * 45.19892 * 1 2 3 24 24 H 1.08996 * 109.47123 * 240.00273 * 2 1 3 25 25 H 1.08996 * 109.47386 * 119.99555 * 2 1 3 26 26 H 1.08998 * 109.47125 * 51.35114 * 5 3 2 27 27 H 1.08997 * 109.47439 * 171.35210 * 5 3 2 28 28 H 0.96998 * 120.00100 * 180.02562 * 9 8 6 29 29 H 1.08996 * 110.97629 * 97.45964 * 16 14 3 30 30 H 1.09004 * 110.96613 * 333.73146 * 16 14 3 31 31 H 1.08995 * 110.48596 * 143.45677 * 17 16 14 32 32 H 1.08996 * 110.48450 * 265.96401 * 17 16 14 33 33 H 0.97001 * 124.34726 * 179.58906 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5673 1.9950 -0.8121 5 6 1.6960 2.1051 1.3355 6 6 0.2039 2.2929 1.4336 7 1 -0.4356 1.9662 0.6269 8 6 -0.3447 2.8817 2.5530 9 7 0.4340 3.2791 3.5355 10 14 -2.1942 3.1137 2.6748 11 1 -2.8414 2.5858 1.4470 12 1 -2.7081 2.3810 3.8600 13 1 -2.5036 4.5594 2.8143 14 6 3.5574 1.4471 -0.1958 15 1 3.9509 2.4564 -0.0752 16 6 3.9178 0.8962 -1.5932 17 6 5.2320 0.1345 -1.3035 18 6 5.1445 -0.2102 0.1669 19 8 5.8303 -1.0382 0.7282 20 7 4.1966 0.5351 0.7610 21 1 -0.3633 -0.9936 -0.2627 22 1 -0.3633 0.2693 0.9918 23 1 -0.3634 0.7241 -0.7292 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 2.0370 1.4713 2.1540 27 1 2.1890 3.0752 1.3975 28 1 0.0480 3.6931 4.3232 29 1 4.0852 1.7078 -2.3012 30 1 3.1456 0.2178 -1.9560 31 1 5.2879 -0.7724 -1.9054 32 1 6.0937 0.7733 -1.4970 33 1 3.9643 0.4774 1.7010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260372807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:11 Heat of formation + Delta-G solvation = -75.730166 kcal Electronic energy + Delta-G solvation = -14480.236961 eV Core-core repulsion = 12118.232945 eV Total energy + Delta-G solvation = -2362.004016 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.40017 -38.53043 -36.14900 -34.12724 -32.12569 -30.67584 -29.08122 -26.00991 -23.75054 -22.75663 -21.54995 -20.39965 -18.57008 -17.75867 -17.29222 -16.56153 -15.84729 -15.65422 -14.86769 -14.64988 -14.42270 -14.08400 -13.80875 -13.34179 -13.08062 -12.94382 -12.85579 -12.71302 -12.18537 -12.07208 -11.96847 -11.52776 -11.38485 -10.90448 -10.82841 -10.61046 -10.38025 -9.91887 -8.11646 -6.14868 1.40236 1.43150 1.53139 1.65436 2.45227 2.55434 3.23428 3.51861 3.72479 3.99667 4.20916 4.29472 4.36678 4.51259 4.79795 4.83568 4.89983 5.02827 5.08507 5.15179 5.19462 5.36440 5.41330 5.49631 5.65944 5.79042 5.82502 5.93588 5.95383 6.21243 6.36536 6.99780 7.29676 7.50253 9.00547 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.047918 B = 0.008037 C = 0.007584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.187051 B = 3482.987185 C = 3690.891439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.082 4.082 4 H 0.084 0.916 5 C 0.032 3.968 6 C -0.519 4.519 7 H 0.087 0.913 8 C -0.006 4.006 9 N -0.939 5.939 10 Si 0.947 3.053 11 H -0.256 1.256 12 H -0.289 1.289 13 H -0.286 1.286 14 C 0.129 3.871 15 H 0.079 0.921 16 C -0.119 4.119 17 C -0.143 4.143 18 C 0.505 3.495 19 O -0.602 6.602 20 N -0.717 5.717 21 H 0.046 0.954 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.033 0.967 26 H -0.014 1.014 27 H -0.012 1.012 28 H 0.256 0.744 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.904 -3.414 -12.602 13.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.101 4.101 4 H 0.103 0.897 5 C -0.005 4.005 6 C -0.557 4.557 7 H 0.105 0.895 8 C -0.202 4.202 9 N -0.581 5.581 10 Si 0.774 3.226 11 H -0.180 1.180 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.025 3.975 15 H 0.097 0.903 16 C -0.156 4.156 17 C -0.183 4.183 18 C 0.293 3.707 19 O -0.484 6.484 20 N -0.369 5.369 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.005 0.995 27 H 0.007 0.993 28 H 0.065 0.935 29 H 0.137 0.863 30 H 0.112 0.888 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.255 -3.730 -12.304 13.542 hybrid contribution -1.055 0.407 1.550 1.918 sum 3.201 -3.322 -10.754 11.702 Atomic orbital electron populations 1.22077 0.96287 0.99724 1.02538 1.21319 0.95933 0.95659 1.00326 1.21474 0.92855 0.96720 0.99077 0.89738 1.19051 0.95460 0.93682 0.92294 1.22164 0.94030 1.36427 1.03068 0.89478 1.25875 1.01926 0.96193 0.96239 1.70112 1.36529 1.43152 1.08270 0.85651 0.81235 0.77448 0.78297 1.17954 1.21557 1.21191 1.22024 0.93143 0.93103 0.89227 0.90313 1.22812 0.96289 1.01579 0.94955 1.22357 1.01004 1.03942 0.90973 1.21714 0.78190 0.78888 0.91894 1.90679 1.48214 1.36790 1.72737 1.46619 1.37806 1.39714 1.12759 0.93529 0.92604 0.92821 0.91024 0.94853 0.99534 0.99319 0.93497 0.86345 0.88827 0.86734 0.85998 0.76182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 8.21 71.98 0.59 -4.52 16 2 C -0.09 -3.09 4.89 30.60 0.15 -2.94 16 3 C -0.08 -2.79 1.83 -10.79 -0.02 -2.81 16 4 H 0.08 2.73 7.99 -2.39 -0.02 2.71 16 5 C 0.03 1.51 4.26 29.85 0.13 1.64 16 6 C -0.52 -26.59 6.86 25.60 0.18 -26.41 16 7 H 0.09 4.15 4.74 -2.91 -0.01 4.14 16 8 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 9 N -0.94 -55.78 13.29 21.45 0.28 -55.49 16 10 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 14 C 0.13 3.58 3.20 45.43 0.15 3.73 16 15 H 0.08 2.19 8.12 -2.38 -0.02 2.17 16 16 C -0.12 -2.19 6.51 31.65 0.21 -1.99 16 17 C -0.14 -2.83 6.86 30.59 0.21 -2.62 16 18 C 0.50 15.82 8.43 87.90 0.74 16.56 16 19 O -0.60 -24.19 18.03 -3.04 -0.05 -24.24 16 20 N -0.72 -22.82 4.87 -439.33 -2.14 -24.96 16 21 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.06 2.31 5.75 -2.39 -0.01 2.30 16 23 H 0.05 1.76 7.16 -2.39 -0.02 1.74 16 24 H 0.07 1.90 6.18 -2.39 -0.01 1.89 16 25 H 0.03 1.21 7.67 -2.39 -0.02 1.19 16 26 H -0.01 -0.72 7.44 -2.39 -0.02 -0.74 16 27 H -0.01 -0.60 8.11 -2.39 -0.02 -0.62 16 28 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 1.64 6.08 -2.39 -0.01 1.62 16 31 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.40 14.34 8.24 -92.71 -0.76 13.58 16 Total: -1.00 -66.52 261.92 3.24 -63.28 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.34 Total: 15.68 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 2.79 Total: -19.23 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -1.86 Total: -80.45 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.05 Total: -24.24 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -66.52 3.24 -63.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.450 kcal (2) G-P(sol) polarization free energy of solvation -66.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds