Wall clock time and date at job start Mon Mar 30 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47501 * 2 1 4 4 H 1.09004 * 109.46870 * 305.45819 * 3 2 1 5 5 C 1.53003 * 109.47288 * 185.45918 * 3 2 1 6 6 C 1.50697 * 109.46996 * 66.27110 * 5 3 2 7 7 H 1.08001 * 120.00054 * 359.97438 * 6 5 3 8 8 C 1.37875 * 119.99816 * 180.02562 * 6 5 3 9 9 N 1.31521 * 120.00106 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00113 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47068 * 90.00067 * 10 8 6 12 12 H 1.48500 * 109.46875 * 210.00053 * 10 8 6 13 13 H 1.48497 * 109.46885 * 329.99947 * 10 8 6 14 14 C 1.53003 * 109.47295 * 65.45478 * 3 2 1 15 15 H 1.08990 * 110.21696 * 300.31887 * 14 3 2 16 16 C 1.54487 * 110.31380 * 62.29118 * 14 3 2 17 17 C 1.54633 * 101.76197 * 144.45635 * 16 14 3 18 18 C 1.51288 * 104.19525 * 335.20193 * 17 16 14 19 19 O 1.21281 * 124.94113 * 196.27551 * 18 17 16 20 20 N 1.34424 * 110.11403 * 16.25202 * 18 17 16 21 21 H 1.09006 * 109.47319 * 54.69615 * 1 2 3 22 22 H 1.09002 * 109.47377 * 174.69749 * 1 2 3 23 23 H 1.09001 * 109.47108 * 294.70094 * 1 2 3 24 24 H 1.09007 * 109.47393 * 239.99838 * 2 1 3 25 25 H 1.09000 * 109.47501 * 119.99998 * 2 1 3 26 26 H 1.09006 * 109.47025 * 186.26575 * 5 3 2 27 27 H 1.08998 * 109.47123 * 306.26375 * 5 3 2 28 28 H 0.96996 * 119.99896 * 179.97438 * 9 8 6 29 29 H 1.08997 * 110.96961 * 262.57346 * 16 14 3 30 30 H 1.09000 * 110.96883 * 26.33769 * 16 14 3 31 31 H 1.08997 * 110.48517 * 216.52510 * 17 16 14 32 32 H 1.08994 * 110.59665 * 93.93327 * 17 16 14 33 33 H 0.97001 * 124.34864 * 180.43041 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5990 1.9837 -0.8371 5 6 3.5639 1.4446 -0.1372 6 6 3.9466 0.9151 -1.4952 7 1 3.1798 0.6074 -2.1907 8 6 5.2759 0.8224 -1.8494 9 7 6.2098 1.1967 -1.0023 10 14 5.7505 0.1654 -3.5324 11 1 5.8280 1.2901 -4.4990 12 1 7.0723 -0.5059 -3.4470 13 1 4.7284 -0.8102 -3.9891 14 6 1.6451 2.1231 1.3122 15 1 0.5611 2.1233 1.4250 16 6 2.3070 1.4050 2.5092 17 6 2.6052 2.5872 3.4603 18 6 2.6994 3.7867 2.5431 19 8 3.1909 4.8539 2.8435 20 7 2.1596 3.4971 1.3465 21 1 -0.3634 0.5939 -0.8387 22 1 -0.3634 -1.0233 -0.0950 23 1 -0.3633 0.4294 0.9336 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9373 2.4626 -0.0258 27 1 3.9991 0.8112 0.6357 28 1 7.1449 1.1312 -1.2514 29 1 1.6170 0.6981 2.9700 30 1 3.2277 0.9073 2.2049 31 1 3.5500 2.4295 3.9803 32 1 1.7938 2.7174 4.1763 33 1 2.1161 4.1166 0.6013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260372810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:14 Heat of formation + Delta-G solvation = -63.493460 kcal Electronic energy + Delta-G solvation = -14487.997762 eV Core-core repulsion = 12126.524369 eV Total energy + Delta-G solvation = -2361.473392 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.05410 -37.05394 -34.29093 -32.54965 -30.90045 -29.44256 -27.02287 -24.21282 -22.17589 -22.10517 -20.09274 -18.70139 -16.75602 -16.59803 -15.70469 -14.66845 -14.47791 -13.91823 -13.52898 -13.17353 -13.02114 -12.63555 -12.48005 -12.17828 -12.05446 -11.39591 -11.03205 -10.87234 -10.83804 -10.64923 -10.32954 -10.16175 -9.71354 -9.41821 -9.34863 -9.02643 -8.45748 -8.35024 -6.01476 -4.03712 3.03706 3.29775 3.36896 3.38672 3.87275 4.43567 4.73892 4.90412 5.17053 5.34056 5.45191 5.58968 5.60222 5.66631 5.76619 5.87696 6.01766 6.13898 6.32245 6.34655 6.43597 6.48567 6.83379 6.94433 7.09410 7.27969 7.50723 7.65854 7.77830 7.97491 8.39422 8.70597 9.02855 9.60176 11.09421 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.010009 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.667987 B = 2796.696461 C = 3456.255886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.091 4.091 4 H 0.062 0.938 5 C 0.028 3.972 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.888 3.112 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.133 3.867 15 H 0.070 0.930 16 C -0.133 4.133 17 C -0.155 4.155 18 C 0.520 3.480 19 O -0.553 6.553 20 N -0.715 5.715 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.260 0.740 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.461 -2.041 5.161 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.110 4.110 4 H 0.080 0.920 5 C -0.009 4.009 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.532 5.532 10 Si 0.716 3.284 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.028 3.972 15 H 0.087 0.913 16 C -0.171 4.171 17 C -0.196 4.196 18 C 0.307 3.693 19 O -0.431 6.431 20 N -0.368 5.368 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -10.015 -1.558 5.440 11.503 hybrid contribution 0.367 -0.141 -1.375 1.431 sum -9.647 -1.699 4.064 10.606 Atomic orbital electron populations 1.21887 0.97615 1.00673 1.00911 1.21472 0.93437 0.96910 1.02924 1.21552 1.00940 0.94808 0.93736 0.91994 1.19169 0.87391 0.97500 0.96805 1.21221 0.91637 1.42502 1.00325 0.92655 1.25012 0.96827 0.95634 0.96909 1.69964 1.00214 1.47863 1.35168 0.86660 0.77880 0.79082 0.84762 1.20787 1.21298 1.19915 1.21881 0.96805 0.80939 0.97572 0.91261 1.22822 1.03147 0.96810 0.94330 1.22316 1.04390 0.94410 0.98449 1.20837 0.76224 0.88671 0.83602 1.90699 1.46304 1.27573 1.78574 1.46271 1.60174 1.15578 1.14796 0.93209 0.93563 0.93446 0.90557 0.92429 0.96223 0.96230 0.93017 0.90071 0.88253 0.88443 0.88675 0.75411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.55 37.15 0.35 -1.61 16 2 C -0.11 -1.76 5.19 -26.74 -0.14 -1.90 16 3 C -0.09 -1.64 1.84 -90.62 -0.17 -1.80 16 4 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 5 C 0.03 0.67 3.93 -27.88 -0.11 0.56 16 6 C -0.52 -13.84 8.34 -34.44 -0.29 -14.13 16 7 H 0.06 1.43 7.17 -52.49 -0.38 1.06 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 10 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.13 2.00 3.08 -67.01 -0.21 1.80 16 15 H 0.07 0.90 6.74 -51.93 -0.35 0.55 16 16 C -0.13 -1.87 5.35 -25.09 -0.13 -2.01 16 17 C -0.16 -2.19 6.86 -26.74 -0.18 -2.38 16 18 C 0.52 9.44 8.43 -10.85 -0.09 9.35 16 19 O -0.55 -12.11 18.03 5.56 0.10 -12.01 16 20 N -0.71 -11.96 4.98 -52.76 -0.26 -12.23 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.53 6.85 -51.93 -0.36 0.18 16 24 H 0.08 1.41 6.90 -51.92 -0.36 1.05 16 25 H 0.06 0.89 7.14 -51.93 -0.37 0.52 16 26 H 0.02 0.52 7.41 -51.93 -0.38 0.13 16 27 H 0.02 0.49 6.28 -51.93 -0.33 0.17 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.65 5.76 -51.93 -0.30 1.35 16 31 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.41 6.66 8.96 -40.82 -0.37 6.29 16 LS Contribution 265.56 15.07 4.00 4.00 Total: -1.00 -31.32 265.56 -6.36 -37.68 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.86 Total: 2.61 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -1.06 Total: -10.61 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.47 Total: -37.94 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.10 Total: -12.01 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.32 -6.36 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.811 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds