Wall clock time and date at job start Mon Mar 30 2020 03:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47501 * 2 1 4 4 H 1.09004 * 109.46870 * 305.45819 * 3 2 1 5 5 C 1.53003 * 109.47288 * 185.45918 * 3 2 1 6 6 C 1.50697 * 109.46996 * 66.27110 * 5 3 2 7 7 H 1.08001 * 120.00054 * 359.97438 * 6 5 3 8 8 C 1.37875 * 119.99816 * 180.02562 * 6 5 3 9 9 N 1.31521 * 120.00106 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00113 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47068 * 90.00067 * 10 8 6 12 12 H 1.48500 * 109.46875 * 210.00053 * 10 8 6 13 13 H 1.48497 * 109.46885 * 329.99947 * 10 8 6 14 14 C 1.53003 * 109.47295 * 65.45478 * 3 2 1 15 15 H 1.08990 * 110.21696 * 300.31887 * 14 3 2 16 16 C 1.54487 * 110.31380 * 62.29118 * 14 3 2 17 17 C 1.54633 * 101.76197 * 144.45635 * 16 14 3 18 18 C 1.51288 * 104.19525 * 335.20193 * 17 16 14 19 19 O 1.21281 * 124.94113 * 196.27551 * 18 17 16 20 20 N 1.34424 * 110.11403 * 16.25202 * 18 17 16 21 21 H 1.09006 * 109.47319 * 54.69615 * 1 2 3 22 22 H 1.09002 * 109.47377 * 174.69749 * 1 2 3 23 23 H 1.09001 * 109.47108 * 294.70094 * 1 2 3 24 24 H 1.09007 * 109.47393 * 239.99838 * 2 1 3 25 25 H 1.09000 * 109.47501 * 119.99998 * 2 1 3 26 26 H 1.09006 * 109.47025 * 186.26575 * 5 3 2 27 27 H 1.08998 * 109.47123 * 306.26375 * 5 3 2 28 28 H 0.96996 * 119.99896 * 179.97438 * 9 8 6 29 29 H 1.08997 * 110.96961 * 262.57346 * 16 14 3 30 30 H 1.09000 * 110.96883 * 26.33769 * 16 14 3 31 31 H 1.08997 * 110.48517 * 216.52510 * 17 16 14 32 32 H 1.08994 * 110.59665 * 93.93327 * 17 16 14 33 33 H 0.97001 * 124.34864 * 180.43041 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5990 1.9837 -0.8371 5 6 3.5639 1.4446 -0.1372 6 6 3.9466 0.9151 -1.4952 7 1 3.1798 0.6074 -2.1907 8 6 5.2759 0.8224 -1.8494 9 7 6.2098 1.1967 -1.0023 10 14 5.7505 0.1654 -3.5324 11 1 5.8280 1.2901 -4.4990 12 1 7.0723 -0.5059 -3.4470 13 1 4.7284 -0.8102 -3.9891 14 6 1.6451 2.1231 1.3122 15 1 0.5611 2.1233 1.4250 16 6 2.3070 1.4050 2.5092 17 6 2.6052 2.5872 3.4603 18 6 2.6994 3.7867 2.5431 19 8 3.1909 4.8539 2.8435 20 7 2.1596 3.4971 1.3465 21 1 -0.3634 0.5939 -0.8387 22 1 -0.3634 -1.0233 -0.0950 23 1 -0.3633 0.4294 0.9336 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9373 2.4626 -0.0258 27 1 3.9991 0.8112 0.6357 28 1 7.1449 1.1312 -1.2514 29 1 1.6170 0.6981 2.9700 30 1 3.2277 0.9073 2.2049 31 1 3.5500 2.4295 3.9803 32 1 1.7938 2.7174 4.1763 33 1 2.1161 4.1166 0.6013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260372810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:13 Heat of formation + Delta-G solvation = -84.841735 kcal Electronic energy + Delta-G solvation = -14488.923492 eV Core-core repulsion = 12126.524369 eV Total energy + Delta-G solvation = -2362.399123 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.40617 -38.54495 -35.84005 -34.45470 -32.12744 -30.99415 -28.60613 -25.84013 -23.76662 -23.37593 -21.41547 -20.13370 -18.65292 -18.00913 -17.19160 -16.48535 -16.01631 -15.38523 -14.90826 -14.53583 -14.35395 -14.16176 -13.92148 -13.68874 -13.33425 -13.02156 -12.78153 -12.49552 -12.23529 -12.11361 -11.81473 -11.54843 -11.31985 -11.06201 -10.91759 -10.80833 -10.47807 -9.84472 -8.16423 -6.24724 1.38775 1.39187 1.49644 1.63759 2.41383 2.57590 3.17644 3.50119 3.70485 4.00257 4.25496 4.38421 4.39181 4.49058 4.60341 4.79178 4.87863 5.02475 5.06601 5.15167 5.24392 5.30647 5.48729 5.51898 5.58674 5.71341 5.84522 5.94417 5.96236 6.16779 6.32122 6.94058 7.30810 7.43582 8.94752 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.010009 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.667987 B = 2796.696461 C = 3456.255886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.083 4.083 4 H 0.056 0.944 5 C 0.036 3.964 6 C -0.527 4.527 7 H 0.061 0.939 8 C -0.002 4.002 9 N -0.935 5.935 10 Si 0.954 3.046 11 H -0.279 1.279 12 H -0.287 1.287 13 H -0.260 1.260 14 C 0.136 3.864 15 H 0.111 0.889 16 C -0.129 4.129 17 C -0.145 4.145 18 C 0.505 3.495 19 O -0.602 6.602 20 N -0.717 5.717 21 H 0.048 0.952 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.064 0.936 26 H -0.017 1.017 27 H 0.000 1.000 28 H 0.259 0.741 29 H 0.125 0.875 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 -3.343 5.383 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.102 4.102 4 H 0.074 0.926 5 C -0.001 4.001 6 C -0.565 4.565 7 H 0.079 0.921 8 C -0.199 4.199 9 N -0.576 5.576 10 Si 0.779 3.221 11 H -0.205 1.205 12 H -0.213 1.213 13 H -0.184 1.184 14 C 0.032 3.968 15 H 0.128 0.872 16 C -0.166 4.166 17 C -0.185 4.185 18 C 0.293 3.707 19 O -0.484 6.484 20 N -0.368 5.368 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.001 0.999 27 H 0.018 0.982 28 H 0.068 0.932 29 H 0.143 0.857 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.152 0.848 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -12.355 -2.894 5.640 13.887 hybrid contribution 1.087 0.266 -1.470 1.847 sum -11.269 -2.629 4.170 12.300 Atomic orbital electron populations 1.21812 0.94246 1.01952 1.02248 1.21389 0.96280 0.94816 1.01885 1.21387 0.96461 0.96822 0.95504 0.92569 1.19016 0.91691 0.94476 0.94921 1.21711 0.91782 1.41372 1.01606 0.92126 1.25895 0.97093 0.96197 1.00719 1.70109 1.00435 1.49727 1.37340 0.85615 0.77684 0.78640 0.80135 1.20501 1.21258 1.18405 1.22039 0.98962 0.79621 0.96203 0.87181 1.22837 1.02651 0.97208 0.93906 1.22357 1.05921 0.92007 0.98209 1.21634 0.75358 0.89180 0.84547 1.90662 1.48401 1.29771 1.79609 1.46464 1.59538 1.16307 1.14496 0.93253 0.92149 0.90965 0.93495 0.91726 0.99875 0.98176 0.93220 0.85701 0.91459 0.88519 0.84796 0.75770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.55 71.98 0.69 -2.43 16 2 C -0.11 -3.19 5.19 30.59 0.16 -3.03 16 3 C -0.08 -2.87 1.84 -10.79 -0.02 -2.89 16 4 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 5 C 0.04 1.75 3.93 29.85 0.12 1.86 16 6 C -0.53 -28.53 8.34 25.60 0.21 -28.32 16 7 H 0.06 3.14 7.17 -2.91 -0.02 3.12 16 8 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 9 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 10 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 14 C 0.14 3.75 3.08 45.45 0.14 3.89 16 15 H 0.11 2.29 6.74 -2.39 -0.02 2.27 16 16 C -0.13 -3.26 5.35 31.66 0.17 -3.09 16 17 C -0.15 -3.77 6.86 30.59 0.21 -3.56 16 18 C 0.50 18.14 8.43 87.90 0.74 18.88 16 19 O -0.60 -26.93 18.03 -3.03 -0.05 -26.99 16 20 N -0.72 -23.57 4.98 -439.43 -2.19 -25.76 16 21 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 22 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.07 1.21 6.85 -2.39 -0.02 1.20 16 24 H 0.05 1.68 6.90 -2.38 -0.02 1.66 16 25 H 0.06 1.84 7.14 -2.39 -0.02 1.83 16 26 H -0.02 -0.95 7.41 -2.38 -0.02 -0.97 16 27 H 0.00 0.00 6.28 -2.39 -0.01 -0.01 16 28 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 2.18 5.76 -2.39 -0.01 2.17 16 31 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.40 13.37 8.96 -92.71 -0.83 12.54 16 Total: -1.00 -70.64 265.56 3.22 -67.42 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.27 Total: 14.33 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 2.88 Total: -18.32 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -1.91 Total: -82.57 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.99 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -70.64 3.22 -67.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.418 kcal (2) G-P(sol) polarization free energy of solvation -70.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds