Wall clock time and date at job start Mon Mar 30 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47096 * 2 1 4 4 H 1.09000 * 109.46608 * 305.00030 * 3 2 1 5 5 C 1.50697 * 109.46958 * 185.00411 * 3 2 1 6 6 H 1.07997 * 120.00116 * 239.99650 * 5 3 2 7 7 C 1.37878 * 119.99829 * 60.00055 * 5 3 2 8 8 N 1.31507 * 120.00493 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99481 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47403 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46744 * 120.00160 * 9 7 5 12 12 H 1.48505 * 109.46783 * 239.99888 * 9 7 5 13 13 C 1.52998 * 109.47189 * 65.00069 * 3 2 1 14 14 H 1.09000 * 110.21863 * 306.93349 * 13 3 2 15 15 C 1.54479 * 110.24713 * 184.99726 * 13 3 2 16 16 C 1.54623 * 101.76734 * 266.33385 * 15 13 3 17 17 C 1.51282 * 104.31101 * 335.13584 * 16 15 13 18 18 O 1.21286 * 124.94199 * 196.27917 * 17 16 15 19 19 N 1.34735 * 109.93792 * 16.31290 * 17 16 15 20 20 C 1.46501 * 124.30373 * 180.38847 * 19 17 16 21 21 H 1.09004 * 109.47069 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46873 * 299.99506 * 1 2 3 23 23 H 1.08992 * 109.47224 * 59.99824 * 1 2 3 24 24 H 1.08997 * 109.46627 * 240.00343 * 2 1 3 25 25 H 1.09002 * 109.47351 * 120.00258 * 2 1 3 26 26 H 0.97005 * 120.00379 * 180.02562 * 8 7 5 27 27 H 1.08994 * 110.96846 * 148.20821 * 15 13 3 28 28 H 1.09005 * 110.99674 * 24.46504 * 15 13 3 29 29 H 1.09002 * 110.48860 * 93.88058 * 16 15 13 30 30 H 1.08998 * 110.48497 * 216.38951 * 16 15 13 31 31 H 1.09003 * 109.47155 * 269.96591 * 20 19 17 32 32 H 1.09001 * 109.46623 * 29.95972 * 20 19 17 33 33 H 1.09000 * 109.47491 * 149.95795 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6521 7 6 4.1431 0.8784 -1.2282 8 7 3.4061 0.3375 -2.1735 9 14 6.0049 0.8813 -1.3820 10 1 6.5987 1.5473 -0.1951 11 1 6.4969 -0.5175 -1.4633 12 1 6.3988 1.6168 -2.6105 13 6 1.6353 2.1265 1.3073 14 1 0.5623 2.0245 1.4694 15 6 2.0315 3.6193 1.2746 16 6 3.4207 3.5918 1.9530 17 6 3.3904 2.3503 2.8169 18 8 4.1656 2.1126 3.7189 19 7 2.3764 1.5495 2.4351 20 6 2.0546 0.2670 3.0659 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.8291 -0.0609 -2.9501 27 1 1.3285 4.2221 1.8493 28 1 2.1053 3.9814 0.2491 29 1 4.2094 3.5166 1.2045 30 1 3.5628 4.4808 2.5675 31 1 2.6014 -0.5318 2.5647 32 1 2.3395 0.2979 4.1176 33 1 0.9837 0.0807 2.9849 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260418498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:28 Heat of formation + Delta-G solvation = -40.954289 kcal Electronic energy + Delta-G solvation = -15136.121100 eV Core-core repulsion = 12775.625080 eV Total energy + Delta-G solvation = -2360.496020 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88991 -36.42128 -33.69219 -32.25876 -31.51978 -27.86572 -26.04877 -25.90725 -22.92067 -21.01888 -19.76964 -18.41199 -16.78915 -15.64430 -15.47344 -14.51089 -14.21539 -13.74141 -13.22544 -12.94011 -12.80258 -12.45247 -11.96275 -11.91681 -11.68439 -11.26558 -11.07903 -10.92054 -10.76324 -10.70475 -10.39674 -9.82357 -9.61712 -9.35559 -9.05762 -8.72475 -8.37242 -7.69559 -6.01486 -4.06897 3.28378 3.37544 3.39298 3.43867 3.88086 4.43024 5.13274 5.23926 5.30830 5.54715 5.77448 5.88275 5.98739 6.08451 6.19320 6.19846 6.29542 6.32963 6.42598 6.53410 6.55180 6.81641 6.90440 7.07393 7.27515 7.39505 7.67463 7.82560 8.03176 8.08577 8.41488 8.93638 8.99424 9.58272 11.03625 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.015878 C = 0.011999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.140299 B = 1762.984276 C = 2332.884817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.041 3.959 4 H 0.038 0.962 5 C -0.509 4.509 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.881 3.119 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.135 3.865 14 H 0.065 0.935 15 C -0.118 4.118 16 C -0.150 4.150 17 C 0.525 3.475 18 O -0.565 6.565 19 N -0.595 5.595 20 C 0.104 3.896 21 H 0.032 0.968 22 H 0.034 0.966 23 H 0.044 0.956 24 H 0.093 0.907 25 H 0.039 0.961 26 H 0.258 0.742 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 2.975 4.397 7.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.022 3.978 4 H 0.056 0.944 5 C -0.547 4.547 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.709 3.291 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.032 3.968 14 H 0.083 0.917 15 C -0.156 4.156 16 C -0.189 4.189 17 C 0.314 3.686 18 O -0.445 6.445 19 N -0.327 5.327 20 C -0.039 4.039 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.112 0.888 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.043 2.679 4.721 7.409 hybrid contribution 0.996 -0.272 -0.337 1.087 sum -4.047 2.407 4.384 6.433 Atomic orbital electron populations 1.21902 0.99613 0.99216 0.99859 1.21745 0.91225 1.00521 1.02895 1.19084 0.96330 0.92316 0.90064 0.94416 1.21331 0.91228 1.37272 1.04887 0.91932 1.24908 0.97571 0.95353 0.95908 1.69874 1.34530 1.38881 1.09521 0.86693 0.86532 0.77836 0.78012 1.19691 1.21140 1.21065 1.22022 0.94015 0.92257 0.88525 0.91718 1.22479 0.95203 0.95894 1.01990 1.22375 1.00517 0.96238 0.99803 1.20825 0.79442 0.85785 0.82543 1.90616 1.42713 1.78306 1.32861 1.47996 1.31748 1.19934 1.33037 1.21438 1.00144 0.85344 0.96960 0.94880 0.94658 0.93669 0.88826 0.94251 0.93177 0.92060 0.89101 0.86733 0.90148 0.92354 0.92136 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.68 37.16 0.36 -2.30 16 2 C -0.13 -2.74 5.08 -26.73 -0.14 -2.88 16 3 C 0.04 0.91 1.53 -91.77 -0.14 0.77 16 4 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 5 C -0.51 -12.87 7.41 -34.44 -0.26 -13.12 16 6 H 0.06 1.60 3.76 -52.49 -0.20 1.41 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.29 11.29 55.43 0.63 -23.66 16 9 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 C 0.13 2.51 2.93 -67.01 -0.20 2.32 16 14 H 0.06 1.09 6.32 -51.93 -0.33 0.77 16 15 C -0.12 -1.94 6.48 -25.10 -0.16 -2.11 16 16 C -0.15 -2.71 6.04 -26.74 -0.16 -2.87 16 17 C 0.53 11.19 6.77 -10.72 -0.07 11.12 16 18 O -0.56 -13.72 17.61 5.55 0.10 -13.62 16 19 N -0.60 -11.71 2.57 -172.60 -0.44 -12.16 16 20 C 0.10 1.80 9.38 59.85 0.56 2.37 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.03 0.56 6.44 -51.93 -0.33 0.23 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 25 H 0.04 0.85 5.01 -51.93 -0.26 0.59 16 26 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.50 7.86 -51.93 -0.41 1.09 16 29 H 0.11 2.25 6.46 -51.93 -0.34 1.91 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.09 6.83 -51.93 -0.35 0.73 16 32 H 0.06 1.01 7.94 -51.93 -0.41 0.60 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 256.62 15.07 3.87 3.87 Total: -1.00 -29.26 256.62 -5.78 -35.04 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.61 Total: -0.51 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -0.30 Total: -5.12 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.18 Total: -35.82 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.10 Total: -13.62 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.26 -5.78 -35.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.919 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds