Wall clock time and date at job start Mon Mar 30 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47096 * 2 1 4 4 H 1.09000 * 109.46608 * 305.00030 * 3 2 1 5 5 C 1.50697 * 109.46958 * 185.00411 * 3 2 1 6 6 H 1.07997 * 120.00116 * 239.99650 * 5 3 2 7 7 C 1.37878 * 119.99829 * 60.00055 * 5 3 2 8 8 N 1.31507 * 120.00493 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99481 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47403 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46744 * 120.00160 * 9 7 5 12 12 H 1.48505 * 109.46783 * 239.99888 * 9 7 5 13 13 C 1.52998 * 109.47189 * 65.00069 * 3 2 1 14 14 H 1.09000 * 110.21863 * 306.93349 * 13 3 2 15 15 C 1.54479 * 110.24713 * 184.99726 * 13 3 2 16 16 C 1.54623 * 101.76734 * 266.33385 * 15 13 3 17 17 C 1.51282 * 104.31101 * 335.13584 * 16 15 13 18 18 O 1.21286 * 124.94199 * 196.27917 * 17 16 15 19 19 N 1.34735 * 109.93792 * 16.31290 * 17 16 15 20 20 C 1.46501 * 124.30373 * 180.38847 * 19 17 16 21 21 H 1.09004 * 109.47069 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46873 * 299.99506 * 1 2 3 23 23 H 1.08992 * 109.47224 * 59.99824 * 1 2 3 24 24 H 1.08997 * 109.46627 * 240.00343 * 2 1 3 25 25 H 1.09002 * 109.47351 * 120.00258 * 2 1 3 26 26 H 0.97005 * 120.00379 * 180.02562 * 8 7 5 27 27 H 1.08994 * 110.96846 * 148.20821 * 15 13 3 28 28 H 1.09005 * 110.99674 * 24.46504 * 15 13 3 29 29 H 1.09002 * 110.48860 * 93.88058 * 16 15 13 30 30 H 1.08998 * 110.48497 * 216.38951 * 16 15 13 31 31 H 1.09003 * 109.47155 * 269.96591 * 20 19 17 32 32 H 1.09001 * 109.46623 * 29.95972 * 20 19 17 33 33 H 1.09000 * 109.47491 * 149.95795 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6521 7 6 4.1431 0.8784 -1.2282 8 7 3.4061 0.3375 -2.1735 9 14 6.0049 0.8813 -1.3820 10 1 6.5987 1.5473 -0.1951 11 1 6.4969 -0.5175 -1.4633 12 1 6.3988 1.6168 -2.6105 13 6 1.6353 2.1265 1.3073 14 1 0.5623 2.0245 1.4694 15 6 2.0315 3.6193 1.2746 16 6 3.4207 3.5918 1.9530 17 6 3.3904 2.3503 2.8169 18 8 4.1656 2.1126 3.7189 19 7 2.3764 1.5495 2.4351 20 6 2.0546 0.2670 3.0659 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.8291 -0.0609 -2.9501 27 1 1.3285 4.2221 1.8493 28 1 2.1053 3.9814 0.2491 29 1 4.2094 3.5166 1.2045 30 1 3.5628 4.4808 2.5675 31 1 2.6014 -0.5318 2.5647 32 1 2.3395 0.2979 4.1176 33 1 0.9837 0.0807 2.9849 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260418498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:28 Heat of formation + Delta-G solvation = -58.516185 kcal Electronic energy + Delta-G solvation = -15136.882641 eV Core-core repulsion = 12775.625080 eV Total energy + Delta-G solvation = -2361.257561 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.46188 -38.12949 -35.46669 -33.76109 -33.29987 -29.49960 -27.75516 -27.36559 -24.65252 -22.50008 -21.44831 -20.02996 -18.57103 -17.29185 -17.18959 -16.27838 -15.95109 -15.31687 -14.82893 -14.49207 -14.35065 -14.12922 -13.50330 -13.46941 -13.12214 -12.99839 -12.77609 -12.68323 -12.48399 -12.27037 -12.01507 -11.57407 -11.32408 -11.00763 -10.73585 -10.52610 -10.34821 -9.30083 -8.03660 -6.11485 1.33493 1.39744 1.47897 1.75147 2.38239 2.45318 3.25013 3.65966 3.85885 4.21230 4.41844 4.47992 4.58886 4.66120 4.72601 4.74836 4.85550 4.93177 4.94341 5.03133 5.22204 5.32932 5.42808 5.44071 5.62702 5.76053 5.80133 6.01749 6.24636 6.39668 6.53120 6.99000 7.37103 7.54691 8.99726 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.015878 C = 0.011999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.140299 B = 1762.984276 C = 2332.884817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.040 3.960 4 H 0.020 0.980 5 C -0.507 4.507 6 H 0.057 0.943 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.924 3.076 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.135 3.865 14 H 0.095 0.905 15 C -0.109 4.109 16 C -0.147 4.147 17 C 0.511 3.489 18 O -0.604 6.604 19 N -0.595 5.595 20 C 0.099 3.901 21 H 0.045 0.955 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.054 0.946 25 H 0.037 0.963 26 H 0.255 0.745 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 3.849 5.199 9.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.021 3.979 4 H 0.038 0.962 5 C -0.546 4.546 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.752 3.248 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 C 0.032 3.968 14 H 0.113 0.887 15 C -0.147 4.147 16 C -0.187 4.187 17 C 0.301 3.699 18 O -0.487 6.487 19 N -0.326 5.326 20 C -0.043 4.043 21 H 0.064 0.936 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.529 3.553 5.507 9.251 hybrid contribution 1.455 -0.572 -0.575 1.666 sum -5.074 2.981 4.933 7.679 Atomic orbital electron populations 1.21768 0.96300 1.00513 1.00936 1.21605 0.94181 0.99586 1.00838 1.19036 0.94280 0.92932 0.91636 0.96206 1.21672 0.93231 1.35665 1.03997 0.92512 1.25442 1.00027 0.95995 0.96374 1.69984 1.35270 1.40064 1.09908 0.86026 0.83752 0.77272 0.77702 1.20369 1.21701 1.20468 1.22045 0.95396 0.93206 0.86144 0.88711 1.22523 0.94803 0.94852 1.02479 1.22367 1.01051 0.96014 0.99272 1.21406 0.79172 0.86980 0.82380 1.90584 1.44085 1.79377 1.34674 1.48192 1.31291 1.20297 1.32797 1.21576 1.01924 0.83955 0.96833 0.93570 0.92055 0.93996 0.92782 0.94450 0.93528 0.88128 0.89229 0.88727 0.87369 0.94136 0.91664 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.68 71.98 0.70 -3.86 16 2 C -0.12 -5.27 5.08 30.60 0.16 -5.12 16 3 C 0.04 1.74 1.53 -11.54 -0.02 1.73 16 4 H 0.02 0.94 8.09 -2.39 -0.02 0.92 16 5 C -0.51 -25.57 7.41 25.60 0.19 -25.38 16 6 H 0.06 2.91 3.76 -2.91 -0.01 2.90 16 7 C 0.02 1.06 5.29 84.66 0.45 1.51 16 8 N -0.91 -50.51 11.29 21.45 0.24 -50.27 16 9 Si 0.92 44.00 29.54 68.60 2.03 46.02 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 C 0.13 4.62 2.93 45.44 0.13 4.76 16 14 H 0.10 2.74 6.32 -2.39 -0.02 2.73 16 15 C -0.11 -3.23 6.48 31.65 0.21 -3.02 16 16 C -0.15 -5.04 6.04 30.59 0.18 -4.86 16 17 C 0.51 21.05 6.77 87.85 0.59 21.64 16 18 O -0.60 -29.07 17.61 -3.05 -0.05 -29.12 16 19 N -0.60 -22.14 2.57 -818.41 -2.10 -24.24 16 20 C 0.10 3.25 9.38 127.77 1.20 4.44 16 21 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 22 H 0.06 1.70 6.44 -2.38 -0.02 1.68 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 2.75 5.95 -2.39 -0.01 2.73 16 25 H 0.04 1.57 5.01 -2.39 -0.01 1.56 16 26 H 0.26 13.75 8.31 -92.70 -0.77 12.98 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.09 2.71 7.86 -2.38 -0.02 2.69 16 29 H 0.09 3.64 6.46 -2.39 -0.02 3.63 16 30 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.04 1.47 6.83 -2.39 -0.02 1.45 16 32 H 0.06 2.07 7.94 -2.39 -0.02 2.05 16 33 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -63.15 256.62 5.00 -58.16 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.10 Total: 7.61 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 3.79 Total: -8.16 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -1.86 Total: -74.51 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.05 Total: -29.12 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -63.15 5.00 -58.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.359 kcal (2) G-P(sol) polarization free energy of solvation -63.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds