Wall clock time and date at job start Mon Mar 30 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47082 * 2 1 4 4 H 1.09000 * 109.47264 * 307.16446 * 3 2 1 5 5 C 1.50707 * 109.47235 * 67.16380 * 3 2 1 6 6 H 1.07994 * 119.99596 * 59.08225 * 5 3 2 7 7 C 1.37878 * 119.99611 * 239.07870 * 5 3 2 8 8 N 1.31511 * 120.00398 * 6.65120 * 7 5 3 9 9 Si 1.86806 * 119.99561 * 186.64890 * 7 5 3 10 10 H 1.48502 * 109.46763 * 89.99907 * 9 7 5 11 11 H 1.48497 * 109.47099 * 210.00421 * 9 7 5 12 12 H 1.48498 * 109.47178 * 330.00474 * 9 7 5 13 13 C 1.52995 * 109.47257 * 187.16713 * 3 2 1 14 14 H 1.08994 * 110.21893 * 55.72320 * 13 3 2 15 15 C 1.54484 * 110.32293 * 177.70389 * 13 3 2 16 16 C 1.54779 * 101.69508 * 93.42539 * 15 13 3 17 17 C 1.51278 * 104.12172 * 25.10583 * 16 15 13 18 18 O 1.21282 * 124.94675 * 163.67717 * 17 16 15 19 19 N 1.34422 * 110.11569 * 343.40247 * 17 16 15 20 20 C 1.46501 * 124.35335 * 179.80131 * 19 17 16 21 21 H 1.08999 * 109.47364 * 61.11448 * 1 2 3 22 22 H 1.09004 * 109.47350 * 181.11513 * 1 2 3 23 23 H 1.09002 * 109.46950 * 301.11112 * 1 2 3 24 24 H 1.08994 * 109.47087 * 239.99547 * 2 1 3 25 25 H 1.09004 * 109.47416 * 119.99920 * 2 1 3 26 26 H 0.97003 * 119.99990 * 179.97438 * 8 7 5 27 27 H 1.08997 * 110.96856 * 211.74469 * 15 13 3 28 28 H 1.09003 * 110.96312 * 335.46072 * 15 13 3 29 29 H 1.08999 * 110.61752 * 266.40365 * 16 15 13 30 30 H 1.09002 * 110.42700 * 143.71488 * 16 15 13 31 31 H 1.09001 * 109.46480 * 354.70856 * 20 19 17 32 32 H 1.08997 * 109.47186 * 114.70847 * 20 19 17 33 33 H 1.09001 * 109.47280 * 234.71513 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5758 1.9920 -0.8189 5 6 1.6875 2.0999 1.3095 6 1 2.0488 1.6825 2.2377 7 6 0.9039 3.2343 1.3224 8 7 0.3562 3.6679 0.2081 9 14 0.6201 4.1552 2.9227 10 1 1.6770 5.1841 3.0957 11 1 -0.7104 4.8136 2.8857 12 1 0.6685 3.2001 4.0587 13 6 3.5593 1.4463 -0.1800 14 1 3.8325 0.9068 -1.0868 15 6 4.0888 2.8963 -0.2405 16 6 4.4587 3.1572 1.2397 17 6 4.7224 1.7781 1.8028 18 8 5.3060 1.5519 2.8417 19 7 4.2105 0.8401 0.9874 20 6 4.2925 -0.6020 1.2320 21 1 -0.3634 0.4964 -0.8998 22 1 -0.3634 -1.0275 0.0200 23 1 -0.3633 0.5310 0.8799 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 -0.1954 4.4658 0.2173 27 1 4.9662 2.9646 -0.8835 28 1 3.3097 3.5824 -0.5728 29 1 3.6295 3.6315 1.7646 30 1 5.3552 3.7737 1.3047 31 1 4.9059 -0.7865 2.1139 32 1 3.2912 -1.0002 1.3961 33 1 4.7415 -1.0922 0.3681 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260418500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:31 Heat of formation + Delta-G solvation = -44.788241 kcal Electronic energy + Delta-G solvation = -15170.680399 eV Core-core repulsion = 12810.018126 eV Total energy + Delta-G solvation = -2360.662273 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.73617 -36.31842 -33.66685 -32.24343 -31.46667 -27.97367 -25.94095 -25.61030 -23.29875 -20.47210 -19.83881 -18.41608 -16.76888 -15.63477 -15.44559 -14.57983 -14.27475 -13.57025 -13.11066 -12.85948 -12.72044 -12.26562 -12.04267 -11.91960 -11.49330 -11.35967 -11.02800 -10.95858 -10.69151 -10.42366 -10.27875 -9.94898 -9.67231 -9.16240 -8.99326 -8.86802 -8.51413 -7.69817 -6.08802 -4.06565 3.25745 3.34835 3.41410 3.48900 3.94273 4.39563 5.20955 5.29036 5.43070 5.70571 5.83279 5.88821 6.02856 6.09270 6.26208 6.29060 6.38915 6.45043 6.47396 6.80244 6.81157 6.89741 7.06929 7.12331 7.29966 7.38330 7.50805 7.72960 7.85889 8.04149 8.40064 9.01988 9.06621 9.54349 10.99891 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.016576 C = 0.012608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.465918 B = 1688.834050 C = 2220.247834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.113 4.113 3 C 0.018 3.982 4 H 0.080 0.920 5 C -0.495 4.495 6 H 0.050 0.950 7 C 0.072 3.928 8 N -0.890 5.890 9 Si 0.872 3.128 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.137 3.863 14 H 0.055 0.945 15 C -0.112 4.112 16 C -0.140 4.140 17 C 0.529 3.471 18 O -0.571 6.571 19 N -0.599 5.599 20 C 0.091 3.909 21 H 0.043 0.957 22 H 0.021 0.979 23 H 0.062 0.938 24 H 0.024 0.976 25 H 0.047 0.953 26 H 0.261 0.739 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.952 -3.394 -3.127 6.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.150 4.150 3 C -0.001 4.001 4 H 0.099 0.901 5 C -0.533 4.533 6 H 0.069 0.931 7 C -0.130 4.130 8 N -0.528 5.528 9 Si 0.700 3.300 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.034 3.966 14 H 0.073 0.927 15 C -0.150 4.150 16 C -0.179 4.179 17 C 0.318 3.682 18 O -0.452 6.452 19 N -0.331 5.331 20 C -0.052 4.052 21 H 0.062 0.938 22 H 0.040 0.960 23 H 0.081 0.919 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.123 -3.456 -2.671 6.006 hybrid contribution -0.375 0.493 0.886 1.081 sum 3.748 -2.964 -1.785 5.100 Atomic orbital electron populations 1.21517 0.96652 0.97883 1.02483 1.21763 0.95793 0.99415 0.98054 1.19444 0.88227 0.92473 0.99986 0.90147 1.20877 1.30689 1.09520 0.92236 0.93127 1.24857 0.95253 0.97362 0.95544 1.69875 1.32783 1.24048 1.26077 0.86898 0.77665 0.80528 0.84884 1.20352 1.21299 1.19919 1.22105 0.96972 0.92023 0.85487 0.92743 1.22407 1.00410 0.97216 0.94932 1.22240 1.02860 0.95015 0.97831 1.20844 0.76237 0.88276 0.82822 1.90596 1.45062 1.85443 1.24121 1.48000 1.54960 1.05285 1.24880 1.21608 1.02102 0.80634 1.00810 0.93768 0.96029 0.91861 0.95769 0.93416 0.92922 0.92659 0.88537 0.86852 0.90670 0.91245 0.91583 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.76 37.16 0.36 -2.21 16 2 C -0.11 -2.24 4.76 -26.73 -0.13 -2.36 16 3 C 0.02 0.39 1.85 -91.77 -0.17 0.22 16 4 H 0.08 1.94 6.92 -51.93 -0.36 1.58 16 5 C -0.50 -12.13 4.28 -34.44 -0.15 -12.27 16 6 H 0.05 1.35 7.24 -52.49 -0.38 0.97 16 7 C 0.07 1.81 5.25 -17.82 -0.09 1.72 16 8 N -0.89 -23.20 12.62 55.43 0.70 -22.50 16 9 Si 0.87 20.55 29.38 -169.99 -4.99 15.55 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.14 2.64 3.09 -67.01 -0.21 2.43 16 14 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 15 C -0.11 -2.05 6.45 -25.02 -0.16 -2.21 16 16 C -0.14 -2.76 6.11 -26.66 -0.16 -2.92 16 17 C 0.53 11.55 7.07 -10.86 -0.08 11.47 16 18 O -0.57 -14.06 17.36 5.56 0.10 -13.96 16 19 N -0.60 -11.83 2.55 -172.70 -0.44 -12.27 16 20 C 0.09 1.53 10.48 59.85 0.63 2.16 16 21 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 1.42 7.42 -51.93 -0.39 1.03 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.95 5.13 -51.93 -0.27 0.68 16 26 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.10 1.92 7.89 -51.93 -0.41 1.51 16 29 H 0.11 2.48 6.73 -51.93 -0.35 2.14 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.19 7.55 -51.93 -0.39 0.80 16 32 H 0.07 1.11 5.29 -51.93 -0.27 0.84 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 261.81 15.07 3.95 3.95 Total: -1.00 -27.74 261.81 -5.76 -33.50 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.91 Total: -0.29 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -0.16 Total: -3.97 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.26 Total: -34.77 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.10 Total: -13.96 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.99 Total: 15.55 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.74 -5.76 -33.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.293 kcal (2) G-P(sol) polarization free energy of solvation -27.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds