Wall clock time and date at job start Mon Mar 30 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47082 * 2 1 4 4 H 1.09000 * 109.47264 * 307.16446 * 3 2 1 5 5 C 1.50707 * 109.47235 * 67.16380 * 3 2 1 6 6 H 1.07994 * 119.99596 * 59.08225 * 5 3 2 7 7 C 1.37878 * 119.99611 * 239.07870 * 5 3 2 8 8 N 1.31511 * 120.00398 * 6.65120 * 7 5 3 9 9 Si 1.86806 * 119.99561 * 186.64890 * 7 5 3 10 10 H 1.48502 * 109.46763 * 89.99907 * 9 7 5 11 11 H 1.48497 * 109.47099 * 210.00421 * 9 7 5 12 12 H 1.48498 * 109.47178 * 330.00474 * 9 7 5 13 13 C 1.52995 * 109.47257 * 187.16713 * 3 2 1 14 14 H 1.08994 * 110.21893 * 55.72320 * 13 3 2 15 15 C 1.54484 * 110.32293 * 177.70389 * 13 3 2 16 16 C 1.54779 * 101.69508 * 93.42539 * 15 13 3 17 17 C 1.51278 * 104.12172 * 25.10583 * 16 15 13 18 18 O 1.21282 * 124.94675 * 163.67717 * 17 16 15 19 19 N 1.34422 * 110.11569 * 343.40247 * 17 16 15 20 20 C 1.46501 * 124.35335 * 179.80131 * 19 17 16 21 21 H 1.08999 * 109.47364 * 61.11448 * 1 2 3 22 22 H 1.09004 * 109.47350 * 181.11513 * 1 2 3 23 23 H 1.09002 * 109.46950 * 301.11112 * 1 2 3 24 24 H 1.08994 * 109.47087 * 239.99547 * 2 1 3 25 25 H 1.09004 * 109.47416 * 119.99920 * 2 1 3 26 26 H 0.97003 * 119.99990 * 179.97438 * 8 7 5 27 27 H 1.08997 * 110.96856 * 211.74469 * 15 13 3 28 28 H 1.09003 * 110.96312 * 335.46072 * 15 13 3 29 29 H 1.08999 * 110.61752 * 266.40365 * 16 15 13 30 30 H 1.09002 * 110.42700 * 143.71488 * 16 15 13 31 31 H 1.09001 * 109.46480 * 354.70856 * 20 19 17 32 32 H 1.08997 * 109.47186 * 114.70847 * 20 19 17 33 33 H 1.09001 * 109.47280 * 234.71513 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5758 1.9920 -0.8189 5 6 1.6875 2.0999 1.3095 6 1 2.0488 1.6825 2.2377 7 6 0.9039 3.2343 1.3224 8 7 0.3562 3.6679 0.2081 9 14 0.6201 4.1552 2.9227 10 1 1.6770 5.1841 3.0957 11 1 -0.7104 4.8136 2.8857 12 1 0.6685 3.2001 4.0587 13 6 3.5593 1.4463 -0.1800 14 1 3.8325 0.9068 -1.0868 15 6 4.0888 2.8963 -0.2405 16 6 4.4587 3.1572 1.2397 17 6 4.7224 1.7781 1.8028 18 8 5.3060 1.5519 2.8417 19 7 4.2105 0.8401 0.9874 20 6 4.2925 -0.6020 1.2320 21 1 -0.3634 0.4964 -0.8998 22 1 -0.3634 -1.0275 0.0200 23 1 -0.3633 0.5310 0.8799 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 -0.1954 4.4658 0.2173 27 1 4.9662 2.9646 -0.8835 28 1 3.3097 3.5824 -0.5728 29 1 3.6295 3.6315 1.7646 30 1 5.3552 3.7737 1.3047 31 1 4.9059 -0.7865 2.1139 32 1 3.2912 -1.0002 1.3961 33 1 4.7415 -1.0922 0.3681 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260418500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:31 Heat of formation + Delta-G solvation = -60.635892 kcal Electronic energy + Delta-G solvation = -15171.367605 eV Core-core repulsion = 12810.018126 eV Total energy + Delta-G solvation = -2361.349479 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.35734 -38.05330 -35.41681 -33.85556 -33.18705 -29.63329 -27.50843 -27.30446 -24.99836 -22.01970 -21.53696 -20.05422 -18.58219 -17.30152 -17.11079 -16.39057 -16.01558 -15.19679 -14.70000 -14.45858 -14.33590 -14.07051 -13.49713 -13.48600 -13.19337 -13.00332 -12.84650 -12.70510 -12.32747 -12.21196 -11.87581 -11.63050 -11.33124 -10.91408 -10.76225 -10.62004 -10.42506 -9.29053 -8.06161 -6.04092 1.33907 1.40712 1.47191 1.79390 2.41085 2.47238 3.25722 3.72518 3.92180 4.25236 4.37344 4.52595 4.53490 4.68208 4.72101 4.81116 4.88590 4.93412 4.97724 5.19650 5.27964 5.30542 5.42604 5.54145 5.66624 5.77241 5.78945 5.89711 6.02359 6.39826 6.54231 7.07579 7.41365 7.56920 9.01920 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.016576 C = 0.012608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.465918 B = 1688.834050 C = 2220.247834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C 0.017 3.983 4 H 0.059 0.941 5 C -0.483 4.483 6 H 0.025 0.975 7 C 0.043 3.957 8 N -0.908 5.908 9 Si 0.904 3.096 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.288 1.288 13 C 0.137 3.863 14 H 0.088 0.912 15 C -0.104 4.104 16 C -0.140 4.140 17 C 0.517 3.483 18 O -0.607 6.607 19 N -0.596 5.596 20 C 0.086 3.914 21 H 0.035 0.965 22 H 0.049 0.951 23 H 0.030 0.970 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.259 0.741 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.795 -4.340 -4.391 7.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.148 4.148 3 C -0.002 4.002 4 H 0.077 0.923 5 C -0.521 4.521 6 H 0.044 0.956 7 C -0.156 4.156 8 N -0.548 5.548 9 Si 0.732 3.268 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.213 1.213 13 C 0.034 3.966 14 H 0.106 0.894 15 C -0.142 4.142 16 C -0.180 4.180 17 C 0.307 3.693 18 O -0.491 6.491 19 N -0.326 5.326 20 C -0.056 4.056 21 H 0.055 0.945 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.952 -4.413 -3.952 7.721 hybrid contribution -0.651 0.726 1.290 1.617 sum 4.302 -3.687 -2.662 6.260 Atomic orbital electron populations 1.21442 0.97031 0.99048 1.00466 1.21718 0.95449 0.98228 0.99378 1.19394 0.90229 0.93180 0.97404 0.92330 1.20866 1.29588 1.09144 0.92530 0.95628 1.25151 0.95741 0.98126 0.96629 1.69927 1.33713 1.24428 1.26702 0.86418 0.77610 0.79755 0.82991 1.19968 1.21183 1.21347 1.22097 0.94945 0.93181 0.86390 0.89420 1.22394 1.01271 0.96181 0.94313 1.22219 1.02935 0.94310 0.98505 1.21188 0.76117 0.89409 0.82578 1.90567 1.46867 1.86079 1.25616 1.48141 1.53754 1.06305 1.24436 1.21805 1.02365 0.79176 1.02238 0.94547 0.93227 0.95089 0.92885 0.93437 0.93135 0.88979 0.90315 0.89502 0.88337 0.91932 0.91534 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.73 9.76 71.98 0.70 -4.03 16 2 C -0.11 -4.11 4.76 30.59 0.15 -3.96 16 3 C 0.02 0.73 1.85 -11.54 -0.02 0.71 16 4 H 0.06 2.77 6.92 -2.39 -0.02 2.75 16 5 C -0.48 -23.62 4.28 25.60 0.11 -23.51 16 6 H 0.03 1.37 7.24 -2.91 -0.02 1.35 16 7 C 0.04 2.19 5.25 84.66 0.44 2.63 16 8 N -0.91 -47.53 12.62 21.45 0.27 -47.26 16 9 Si 0.90 42.53 29.38 68.60 2.02 44.55 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 13 C 0.14 4.86 3.09 45.44 0.14 5.00 16 14 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 15 C -0.10 -3.55 6.45 31.71 0.20 -3.35 16 16 C -0.14 -5.36 6.11 30.64 0.19 -5.18 16 17 C 0.52 22.01 7.07 87.90 0.62 22.63 16 18 O -0.61 -29.71 17.36 -3.04 -0.05 -29.77 16 19 N -0.60 -22.17 2.55 -818.89 -2.08 -24.26 16 20 C 0.09 2.65 10.48 127.77 1.34 3.99 16 21 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.03 1.36 7.42 -2.39 -0.02 1.34 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.78 5.13 -2.38 -0.01 1.77 16 26 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.08 3.01 7.89 -2.39 -0.02 3.00 16 29 H 0.09 3.82 6.73 -2.39 -0.02 3.80 16 30 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.06 2.03 7.55 -2.39 -0.02 2.01 16 32 H 0.07 2.07 5.29 -2.39 -0.01 2.06 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -59.19 261.81 5.10 -54.09 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.08 Total: 7.71 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 3.87 Total: -5.05 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.81 Total: -71.52 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.77 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.02 Total: 44.55 kcal Total: -59.19 5.10 -54.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.551 kcal (2) G-P(sol) polarization free energy of solvation -59.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds