Wall clock time and date at job start Mon Mar 30 2020 03:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47322 * 2 1 4 4 H 1.09002 * 109.47183 * 304.31265 * 3 2 1 5 5 C 1.50701 * 109.46935 * 64.31092 * 3 2 1 6 6 H 1.07998 * 120.00056 * 60.22155 * 5 3 2 7 7 C 1.37877 * 120.00083 * 240.22384 * 5 3 2 8 8 N 1.31511 * 120.00630 * 174.19208 * 7 5 3 9 9 Si 1.86801 * 119.99708 * 354.18924 * 7 5 3 10 10 H 1.48506 * 109.47177 * 86.18745 * 9 7 5 11 11 H 1.48502 * 109.47514 * 206.18528 * 9 7 5 12 12 H 1.48498 * 109.47530 * 326.19103 * 9 7 5 13 13 C 1.53006 * 109.47178 * 184.30959 * 3 2 1 14 14 H 1.08997 * 110.21385 * 305.39590 * 13 3 2 15 15 C 1.54479 * 110.24131 * 183.37737 * 13 3 2 16 16 C 1.54637 * 101.76117 * 215.58191 * 15 13 3 17 17 C 1.51286 * 104.19208 * 24.80044 * 16 15 13 18 18 O 1.21283 * 124.93689 * 164.01374 * 17 16 15 19 19 N 1.34417 * 110.11782 * 343.74520 * 17 16 15 20 20 C 1.46497 * 124.34958 * 179.61497 * 19 17 16 21 21 H 1.08998 * 109.47081 * 182.19676 * 1 2 3 22 22 H 1.08997 * 109.46947 * 302.19602 * 1 2 3 23 23 H 1.08997 * 109.46677 * 62.19664 * 1 2 3 24 24 H 1.09000 * 109.46873 * 240.00027 * 2 1 3 25 25 H 1.09002 * 109.47131 * 120.00535 * 2 1 3 26 26 H 0.96996 * 120.00392 * 180.02562 * 8 7 5 27 27 H 1.08996 * 110.97210 * 333.70089 * 15 13 3 28 28 H 1.08998 * 110.97028 * 97.43212 * 15 13 3 29 29 H 1.09000 * 110.48699 * 266.12035 * 16 15 13 30 30 H 1.08995 * 110.48415 * 143.47438 * 16 15 13 31 31 H 1.09003 * 109.46981 * 5.44020 * 20 19 17 32 32 H 1.08999 * 109.47217 * 125.43860 * 20 19 17 33 33 H 1.09001 * 109.47323 * 245.43927 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6150 1.9781 -0.8488 5 6 1.6268 2.1213 1.2804 6 1 1.9592 1.7302 2.2306 7 6 0.8244 3.2418 1.2388 8 7 0.3699 3.7671 2.3555 9 14 0.3828 4.0137 -0.4039 10 1 -0.8170 3.3391 -0.9614 11 1 0.0938 5.4575 -0.2108 12 1 1.5203 3.8583 -1.3458 13 6 3.5663 1.4438 -0.1084 14 1 4.0005 0.8309 0.6815 15 6 4.1068 2.8885 -0.0249 16 6 5.3049 2.8337 -1.0009 17 6 4.9615 1.7040 -1.9467 18 8 5.4958 1.5081 -3.0178 19 7 3.9823 0.9454 -1.4246 20 6 3.4050 -0.2282 -2.0845 21 1 -0.3633 -1.0269 0.0394 22 1 -0.3633 0.5475 0.8696 23 1 -0.3632 0.4793 -0.9090 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 -0.1949 4.5551 2.3261 27 1 3.3591 3.6050 -0.3649 28 1 4.4376 3.1234 0.9868 29 1 6.2263 2.6133 -0.4619 30 1 5.3961 3.7731 -1.5460 31 1 3.9556 -0.4369 -3.0017 32 1 3.4698 -1.0883 -1.4181 33 1 2.3599 -0.0326 -2.3246 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260418501.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:34 Heat of formation + Delta-G solvation = -38.481646 kcal Electronic energy + Delta-G solvation = -14921.859015 eV Core-core repulsion = 12561.470217 eV Total energy + Delta-G solvation = -2360.388799 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.03285 -36.74713 -34.08527 -32.65932 -31.68525 -28.69785 -26.32745 -25.31280 -23.53604 -20.61499 -19.67205 -18.82312 -17.53122 -16.00761 -15.80703 -14.74059 -14.35134 -13.72444 -13.41686 -13.29364 -12.84678 -12.75169 -12.40157 -12.18401 -11.81156 -11.50328 -11.47130 -11.10945 -11.01659 -10.47964 -10.28287 -9.82193 -9.72475 -9.47539 -9.33530 -8.97189 -8.68249 -8.09239 -6.18778 -4.17585 3.01890 3.19728 3.29228 3.31312 3.58789 4.31233 4.87094 5.10773 5.22107 5.41743 5.56748 5.67853 5.78607 5.89914 5.93510 6.04867 6.10574 6.14109 6.25133 6.51808 6.56750 6.67963 6.71365 6.85576 6.98449 7.08910 7.24721 7.26650 7.57233 7.74087 8.39712 8.63840 8.86975 9.44449 10.94107 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.030278 B = 0.013335 C = 0.011169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.556491 B = 2099.172327 C = 2506.332892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C 0.007 3.993 4 H 0.040 0.960 5 C -0.501 4.501 6 H 0.076 0.924 7 C 0.079 3.921 8 N -0.895 5.895 9 Si 0.865 3.135 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.263 1.263 13 C 0.136 3.864 14 H 0.071 0.929 15 C -0.110 4.110 16 C -0.160 4.160 17 C 0.512 3.488 18 O -0.560 6.560 19 N -0.614 5.614 20 C 0.093 3.907 21 H 0.032 0.968 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.265 0.735 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 -4.103 -4.575 7.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C -0.013 4.013 4 H 0.059 0.941 5 C -0.539 4.539 6 H 0.094 0.906 7 C -0.123 4.123 8 N -0.533 5.533 9 Si 0.694 3.306 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.189 1.189 13 C 0.034 3.966 14 H 0.089 0.911 15 C -0.148 4.148 16 C -0.200 4.200 17 C 0.300 3.700 18 O -0.440 6.440 19 N -0.347 5.347 20 C -0.049 4.049 21 H 0.051 0.949 22 H 0.090 0.910 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.373 -4.126 -5.060 7.858 hybrid contribution -0.470 0.512 -0.706 0.991 sum 3.903 -3.613 -5.766 7.844 Atomic orbital electron populations 1.21652 0.96747 0.99216 1.02148 1.22130 0.95965 0.98782 1.00197 1.19551 0.89254 0.94062 0.98437 0.94148 1.20736 1.30497 1.10849 0.91807 0.90632 1.25016 0.95139 0.96553 0.95614 1.69879 1.34190 1.22733 1.26472 0.87098 0.79434 0.78749 0.85368 1.20178 1.21575 1.18866 1.22271 0.98926 0.93829 0.81579 0.91118 1.22516 0.95520 0.97082 0.99635 1.22418 1.00894 0.98346 0.98373 1.21022 0.78984 0.83972 0.86012 1.90636 1.56160 1.74204 1.23011 1.48505 1.36990 1.28267 1.20897 1.21708 0.98659 0.87157 0.97356 0.94913 0.91007 0.94581 0.92898 0.93145 0.92538 0.89975 0.89209 0.88516 0.88946 0.91220 0.91774 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.76 37.16 0.36 -2.28 16 2 C -0.13 -2.48 5.02 -26.73 -0.13 -2.61 16 3 C 0.01 0.14 1.23 -91.77 -0.11 0.03 16 4 H 0.04 0.90 4.68 -51.93 -0.24 0.66 16 5 C -0.50 -12.33 6.94 -34.44 -0.24 -12.57 16 6 H 0.08 2.05 8.06 -52.49 -0.42 1.63 16 7 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -25.34 13.96 55.43 0.77 -24.57 16 9 Si 0.87 20.31 26.01 -169.99 -4.42 15.88 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.26 -5.98 5.86 56.52 0.33 -5.64 16 13 C 0.14 2.54 2.95 -67.01 -0.20 2.34 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 15 C -0.11 -1.95 5.90 -25.09 -0.15 -2.10 16 16 C -0.16 -2.55 6.86 -26.73 -0.18 -2.73 16 17 C 0.51 9.64 8.02 -10.86 -0.09 9.56 16 18 O -0.56 -12.03 17.36 5.55 0.10 -11.94 16 19 N -0.61 -11.04 3.18 -172.70 -0.55 -11.59 16 20 C 0.09 1.44 8.91 59.85 0.53 1.97 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.07 1.54 7.29 -51.93 -0.38 1.16 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.86 3.28 -51.93 -0.17 0.69 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.08 1.63 5.90 -51.93 -0.31 1.32 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.07 1.06 7.55 -51.93 -0.39 0.66 16 32 H 0.06 0.87 7.37 -51.93 -0.38 0.49 16 33 H 0.07 1.01 6.60 -51.93 -0.34 0.67 16 LS Contribution 257.69 15.07 3.88 3.88 Total: -1.00 -28.90 257.69 -5.33 -34.23 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.80 Total: 0.53 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.30 Total: -6.43 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.22 Total: -36.16 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.10 Total: -11.94 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.42 Total: 15.88 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.90 -5.33 -34.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418501.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.255 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds