Wall clock time and date at job start Mon Mar 30 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47322 * 2 1 4 4 H 1.09002 * 109.47183 * 304.31265 * 3 2 1 5 5 C 1.50701 * 109.46935 * 64.31092 * 3 2 1 6 6 H 1.07998 * 120.00056 * 60.22155 * 5 3 2 7 7 C 1.37877 * 120.00083 * 240.22384 * 5 3 2 8 8 N 1.31511 * 120.00630 * 174.19208 * 7 5 3 9 9 Si 1.86801 * 119.99708 * 354.18924 * 7 5 3 10 10 H 1.48506 * 109.47177 * 86.18745 * 9 7 5 11 11 H 1.48502 * 109.47514 * 206.18528 * 9 7 5 12 12 H 1.48498 * 109.47530 * 326.19103 * 9 7 5 13 13 C 1.53006 * 109.47178 * 184.30959 * 3 2 1 14 14 H 1.08997 * 110.21385 * 305.39590 * 13 3 2 15 15 C 1.54479 * 110.24131 * 183.37737 * 13 3 2 16 16 C 1.54637 * 101.76117 * 215.58191 * 15 13 3 17 17 C 1.51286 * 104.19208 * 24.80044 * 16 15 13 18 18 O 1.21283 * 124.93689 * 164.01374 * 17 16 15 19 19 N 1.34417 * 110.11782 * 343.74520 * 17 16 15 20 20 C 1.46497 * 124.34958 * 179.61497 * 19 17 16 21 21 H 1.08998 * 109.47081 * 182.19676 * 1 2 3 22 22 H 1.08997 * 109.46947 * 302.19602 * 1 2 3 23 23 H 1.08997 * 109.46677 * 62.19664 * 1 2 3 24 24 H 1.09000 * 109.46873 * 240.00027 * 2 1 3 25 25 H 1.09002 * 109.47131 * 120.00535 * 2 1 3 26 26 H 0.96996 * 120.00392 * 180.02562 * 8 7 5 27 27 H 1.08996 * 110.97210 * 333.70089 * 15 13 3 28 28 H 1.08998 * 110.97028 * 97.43212 * 15 13 3 29 29 H 1.09000 * 110.48699 * 266.12035 * 16 15 13 30 30 H 1.08995 * 110.48415 * 143.47438 * 16 15 13 31 31 H 1.09003 * 109.46981 * 5.44020 * 20 19 17 32 32 H 1.08999 * 109.47217 * 125.43860 * 20 19 17 33 33 H 1.09001 * 109.47323 * 245.43927 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6150 1.9781 -0.8488 5 6 1.6268 2.1213 1.2804 6 1 1.9592 1.7302 2.2306 7 6 0.8244 3.2418 1.2388 8 7 0.3699 3.7671 2.3555 9 14 0.3828 4.0137 -0.4039 10 1 -0.8170 3.3391 -0.9614 11 1 0.0938 5.4575 -0.2108 12 1 1.5203 3.8583 -1.3458 13 6 3.5663 1.4438 -0.1084 14 1 4.0005 0.8309 0.6815 15 6 4.1068 2.8885 -0.0249 16 6 5.3049 2.8337 -1.0009 17 6 4.9615 1.7040 -1.9467 18 8 5.4958 1.5081 -3.0178 19 7 3.9823 0.9454 -1.4246 20 6 3.4050 -0.2282 -2.0845 21 1 -0.3633 -1.0269 0.0394 22 1 -0.3633 0.5475 0.8696 23 1 -0.3632 0.4793 -0.9090 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 -0.1949 4.5551 2.3261 27 1 3.3591 3.6050 -0.3649 28 1 4.4376 3.1234 0.9868 29 1 6.2263 2.6133 -0.4619 30 1 5.3961 3.7731 -1.5460 31 1 3.9556 -0.4369 -3.0017 32 1 3.4698 -1.0883 -1.4181 33 1 2.3599 -0.0326 -2.3246 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260418501.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:33 Heat of formation + Delta-G solvation = -56.808006 kcal Electronic energy + Delta-G solvation = -14922.653706 eV Core-core repulsion = 12561.470217 eV Total energy + Delta-G solvation = -2361.183489 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.48464 -38.31929 -35.72795 -34.19434 -33.39859 -30.26712 -27.63157 -27.07587 -25.11134 -22.05876 -21.33496 -20.26939 -19.35577 -17.50508 -17.31289 -16.31655 -16.10521 -15.24175 -14.91643 -14.75392 -14.64177 -14.22487 -13.89395 -13.64653 -13.27786 -13.07096 -12.85464 -12.79707 -12.69181 -12.14649 -11.81166 -11.63765 -11.35660 -11.06464 -10.91136 -10.65275 -10.61038 -9.55879 -8.23002 -6.22113 1.31559 1.37938 1.42549 1.58654 2.21413 2.35723 3.14580 3.51595 3.82348 3.98988 4.26411 4.38341 4.41971 4.49476 4.57265 4.69563 4.72624 4.82129 4.84773 5.00160 5.06229 5.21422 5.27299 5.35207 5.46087 5.54676 5.63406 5.69481 5.81302 6.22778 6.39629 6.84294 7.20639 7.42209 8.93628 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.030278 B = 0.013335 C = 0.011169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.556491 B = 2099.172327 C = 2506.332892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.006 3.994 4 H 0.030 0.970 5 C -0.480 4.480 6 H 0.044 0.956 7 C 0.033 3.967 8 N -0.944 5.944 9 Si 0.912 3.088 10 H -0.275 1.275 11 H -0.295 1.295 12 H -0.250 1.250 13 C 0.140 3.860 14 H 0.081 0.919 15 C -0.112 4.112 16 C -0.148 4.148 17 C 0.504 3.496 18 O -0.590 6.590 19 N -0.614 5.614 20 C 0.084 3.916 21 H 0.061 0.939 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.084 0.916 25 H 0.050 0.950 26 H 0.262 0.738 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.125 -5.050 -5.802 9.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C -0.014 4.014 4 H 0.048 0.952 5 C -0.519 4.519 6 H 0.062 0.938 7 C -0.164 4.164 8 N -0.585 5.585 9 Si 0.740 3.260 10 H -0.201 1.201 11 H -0.221 1.221 12 H -0.174 1.174 13 C 0.037 3.963 14 H 0.099 0.901 15 C -0.150 4.150 16 C -0.188 4.188 17 C 0.294 3.706 18 O -0.472 6.472 19 N -0.346 5.346 20 C -0.057 4.057 21 H 0.080 0.920 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.236 -5.096 -6.298 9.646 hybrid contribution -0.729 0.717 -0.287 1.062 sum 4.507 -4.379 -6.584 9.101 Atomic orbital electron populations 1.21621 0.96956 1.00576 1.00480 1.22131 0.95782 0.97269 1.01752 1.19523 0.91064 0.95056 0.95756 0.95225 1.20853 1.28814 1.09981 0.92224 0.93798 1.25570 0.95666 0.97385 0.97804 1.70001 1.36182 1.23757 1.28511 0.86326 0.79526 0.77616 0.82573 1.20092 1.22145 1.17400 1.22070 0.97090 0.94763 0.82355 0.90132 1.22486 0.95928 0.95977 1.00604 1.22422 1.01027 0.97955 0.97399 1.21448 0.78808 0.84489 0.85877 1.90624 1.57219 1.75087 1.24301 1.48569 1.36781 1.28750 1.20505 1.21911 0.98712 0.87072 0.97975 0.91967 0.94481 0.94537 0.89779 0.93093 0.92824 0.92103 0.88483 0.85682 0.87671 0.90925 0.89507 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 9.76 71.98 0.70 -4.27 16 2 C -0.13 -4.58 5.02 30.59 0.15 -4.43 16 3 C 0.01 0.23 1.23 -11.54 -0.01 0.21 16 4 H 0.03 1.27 4.68 -2.39 -0.01 1.25 16 5 C -0.48 -23.65 6.94 25.60 0.18 -23.48 16 6 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16 7 C 0.03 1.76 5.47 84.66 0.46 2.23 16 8 N -0.94 -54.71 13.96 21.45 0.30 -54.41 16 9 Si 0.91 41.75 26.01 68.60 1.78 43.54 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.25 -10.75 5.86 99.48 0.58 -10.17 16 13 C 0.14 4.88 2.95 45.45 0.13 5.01 16 14 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 15 C -0.11 -3.76 5.90 31.65 0.19 -3.57 16 16 C -0.15 -4.27 6.86 30.59 0.21 -4.06 16 17 C 0.50 17.66 8.02 87.90 0.71 18.37 16 18 O -0.59 -24.08 17.36 -3.04 -0.05 -24.13 16 19 N -0.61 -20.32 3.18 -818.90 -2.61 -22.93 16 20 C 0.08 2.32 8.91 127.77 1.14 3.46 16 21 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.04 1.56 7.29 -2.39 -0.02 1.54 16 23 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 2.42 3.28 -2.39 -0.01 2.42 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.06 2.31 5.90 -2.39 -0.01 2.29 16 28 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.07 2.00 7.55 -2.39 -0.02 1.98 16 32 H 0.09 2.01 7.37 -2.39 -0.02 1.99 16 33 H 0.07 1.89 6.60 -2.39 -0.02 1.87 16 Total: -1.00 -61.80 257.69 4.25 -57.55 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.97 Total: 10.90 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 3.86 Total: -10.52 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -2.31 Total: -77.34 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.78 Total: 43.54 kcal Total: -61.80 4.25 -57.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418501.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.740 kcal (2) G-P(sol) polarization free energy of solvation -61.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds