Wall clock time and date at job start Mon Mar 30 2020 03:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 H 1.09004 * 109.47005 * 304.43948 * 3 2 1 5 5 C 1.50702 * 109.47290 * 64.43958 * 3 2 1 6 6 H 1.07995 * 119.99917 * 65.26958 * 5 3 2 7 7 C 1.37875 * 119.99691 * 245.27341 * 5 3 2 8 8 N 1.31515 * 120.00441 * 9.78111 * 7 5 3 9 9 Si 1.86800 * 119.99659 * 189.77909 * 7 5 3 10 10 H 1.48501 * 109.47338 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47628 * 300.00179 * 9 7 5 12 12 H 1.48502 * 109.47402 * 60.00085 * 9 7 5 13 13 C 1.52996 * 109.47144 * 184.44313 * 3 2 1 14 14 H 1.08994 * 110.43451 * 302.53437 * 13 3 2 15 15 C 1.54636 * 110.48307 * 179.97438 * 13 3 2 16 16 C 1.54489 * 101.76083 * 216.51974 * 15 13 3 17 17 N 1.46764 * 105.47378 * 25.41778 * 16 15 13 18 18 C 1.46497 * 124.34805 * 162.97678 * 17 16 15 19 19 C 1.34416 * 111.29851 * 342.98313 * 17 16 15 20 20 O 1.21286 * 124.93573 * 180.44292 * 19 17 16 21 21 H 1.08998 * 109.47235 * 303.70700 * 1 2 3 22 22 H 1.08997 * 109.46549 * 63.71228 * 1 2 3 23 23 H 1.09004 * 109.46822 * 183.70965 * 1 2 3 24 24 H 1.08996 * 109.47559 * 239.99586 * 2 1 3 25 25 H 1.08999 * 109.47069 * 119.99748 * 2 1 3 26 26 H 0.96998 * 119.99580 * 356.15426 * 8 7 5 27 27 H 1.08992 * 110.97236 * 334.63676 * 15 13 3 28 28 H 1.09000 * 110.96764 * 98.40555 * 15 13 3 29 29 H 1.09002 * 110.23784 * 144.41934 * 16 15 13 30 30 H 1.09000 * 110.24541 * 266.41632 * 16 15 13 31 31 H 1.09008 * 109.46671 * 90.00285 * 18 17 16 32 32 H 1.08995 * 109.47157 * 210.00050 * 18 17 16 33 33 H 1.09001 * 109.47093 * 330.00506 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6132 1.9788 -0.8476 5 6 1.6296 2.1205 1.2818 6 1 2.0290 1.7789 2.2252 7 6 0.7440 3.1768 1.2499 8 7 0.1106 3.4705 0.1354 9 14 0.4439 4.1907 2.7898 10 1 -0.5436 5.2596 2.4941 11 1 -0.0831 3.3130 3.8655 12 1 1.7204 4.8060 3.2340 13 6 3.5659 1.4439 -0.1117 14 1 4.0078 0.8729 0.7048 15 6 4.1069 2.8925 -0.1145 16 6 5.2866 2.7862 -1.1064 17 7 4.9591 1.6570 -1.9847 18 6 5.5960 1.4053 -3.2798 19 6 3.9995 0.8835 -1.4483 20 8 3.5477 -0.1185 -1.9610 21 1 -0.3633 0.5703 0.8549 22 1 -0.3632 0.4551 -0.9214 23 1 -0.3633 -1.0256 0.0665 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 0.3075 2.9801 -0.6780 27 1 3.3527 3.5899 -0.4788 28 1 4.4559 3.1805 0.8772 29 1 5.3738 3.7038 -1.6882 30 1 6.2144 2.5896 -0.5693 31 1 6.4726 0.7734 -3.1368 32 1 4.8897 0.9027 -3.9405 33 1 5.8997 2.3525 -3.7255 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260421619.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:55 Heat of formation + Delta-G solvation = -49.530409 kcal Electronic energy + Delta-G solvation = -14780.027669 eV Core-core repulsion = 12419.159760 eV Total energy + Delta-G solvation = -2360.867909 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.93895 -35.82789 -35.41643 -31.97794 -31.17611 -27.92240 -26.51102 -24.79311 -23.27879 -20.69383 -20.08876 -18.65131 -16.88437 -16.13171 -15.65464 -14.88748 -13.90451 -13.72553 -13.31629 -13.15446 -12.69233 -12.43658 -12.27286 -12.14346 -11.70021 -11.53884 -11.38800 -10.78156 -10.70271 -10.32820 -10.14172 -9.82046 -9.51303 -9.31449 -9.06523 -8.42964 -8.32333 -8.06724 -6.32165 -3.99463 3.21112 3.43224 3.43712 3.47303 3.63307 4.52959 5.00545 5.15056 5.35646 5.38913 5.55217 5.58700 5.70204 5.84383 5.90484 6.08979 6.38194 6.44249 6.59022 6.63304 6.80587 6.92104 7.08231 7.13165 7.17155 7.46498 7.55508 7.57266 7.66779 8.28646 8.47376 8.77859 8.93848 9.70205 11.05850 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.033805 B = 0.011295 C = 0.009274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.082920 B = 2478.357801 C = 3018.464494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.123 4.123 3 C 0.045 3.955 4 H 0.043 0.957 5 C -0.584 4.584 6 H 0.048 0.952 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 1.061 2.939 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.288 1.288 13 C -0.106 4.106 14 H 0.089 0.911 15 C -0.107 4.107 16 C 0.100 3.900 17 N -0.634 5.634 18 C 0.098 3.902 19 C 0.516 3.484 20 O -0.535 6.535 21 H 0.064 0.936 22 H 0.036 0.964 23 H 0.023 0.977 24 H 0.058 0.942 25 H 0.036 0.964 26 H 0.271 0.729 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.535 0.110 -2.037 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C 0.026 3.974 4 H 0.061 0.939 5 C -0.622 4.622 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.890 3.110 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.215 1.215 13 C -0.128 4.128 14 H 0.107 0.893 15 C -0.145 4.145 16 C -0.023 4.023 17 N -0.370 5.370 18 C -0.045 4.045 19 C 0.306 3.694 20 O -0.412 6.412 21 H 0.083 0.917 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.430 0.831 -1.791 8.658 hybrid contribution 1.098 -1.203 -0.607 1.738 sum 9.527 -0.372 -2.399 9.832 Atomic orbital electron populations 1.21543 0.97042 0.98273 1.01794 1.21792 0.95325 0.99100 0.99897 1.18882 0.86517 0.93400 0.98634 0.93862 1.21739 1.30423 1.17633 0.92395 0.93388 1.25711 0.92905 0.96289 1.03068 1.70834 1.38213 1.44368 1.01253 0.83656 0.76287 0.76371 0.74712 1.20989 1.21599 1.21462 1.22232 1.02370 0.95430 0.92728 0.89278 1.22443 0.95696 0.97701 0.98680 1.22189 0.98996 0.88555 0.92525 1.48336 1.39953 1.28839 1.19878 1.21425 0.97540 1.00920 0.84573 1.21670 0.77370 0.82297 0.88065 1.90571 1.57525 1.25537 1.67595 0.91725 0.94518 0.95748 0.92365 0.94538 0.91642 0.89767 0.89805 0.91324 0.92057 0.93376 0.91168 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.78 37.16 0.36 -2.66 16 2 C -0.12 -2.95 5.26 -26.73 -0.14 -3.09 16 3 C 0.05 1.10 1.48 -91.77 -0.14 0.97 16 4 H 0.04 1.17 5.82 -51.93 -0.30 0.87 16 5 C -0.58 -15.21 6.53 -34.44 -0.22 -15.43 16 6 H 0.05 1.26 7.83 -52.49 -0.41 0.85 16 7 C 0.03 0.67 5.39 -17.82 -0.10 0.58 16 8 N -0.91 -26.15 13.64 55.43 0.76 -25.39 16 9 Si 1.06 24.08 29.91 -169.99 -5.09 19.00 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 13 C -0.11 -2.22 2.50 -90.63 -0.23 -2.45 16 14 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 15 C -0.11 -1.94 6.03 -25.09 -0.15 -2.09 16 16 C 0.10 1.46 7.35 -3.12 -0.02 1.44 16 17 N -0.63 -10.73 3.33 -180.28 -0.60 -11.33 16 18 C 0.10 1.31 10.96 59.85 0.66 1.97 16 19 C 0.52 10.76 7.42 -10.86 -0.08 10.68 16 20 O -0.54 -12.65 14.89 5.55 0.08 -12.57 16 21 H 0.06 1.63 7.20 -51.93 -0.37 1.25 16 22 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 1.42 5.44 -51.93 -0.28 1.14 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.27 7.88 6.35 -40.82 -0.26 7.62 16 27 H 0.08 1.72 7.91 -51.93 -0.41 1.31 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 267.56 15.07 4.03 4.03 Total: -1.00 -30.20 267.56 -5.93 -36.12 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.05 Total: 0.23 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -0.06 Total: -10.09 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.16 Total: -36.72 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.09 Total: 19.00 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.20 -5.93 -36.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260421619.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.405 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds