Wall clock time and date at job start Mon Mar 30 2020 03:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 H 1.09004 * 109.47005 * 304.43948 * 3 2 1 5 5 C 1.50702 * 109.47290 * 64.43958 * 3 2 1 6 6 H 1.07995 * 119.99917 * 65.26958 * 5 3 2 7 7 C 1.37875 * 119.99691 * 245.27341 * 5 3 2 8 8 N 1.31515 * 120.00441 * 9.78111 * 7 5 3 9 9 Si 1.86800 * 119.99659 * 189.77909 * 7 5 3 10 10 H 1.48501 * 109.47338 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47628 * 300.00179 * 9 7 5 12 12 H 1.48502 * 109.47402 * 60.00085 * 9 7 5 13 13 C 1.52996 * 109.47144 * 184.44313 * 3 2 1 14 14 H 1.08994 * 110.43451 * 302.53437 * 13 3 2 15 15 C 1.54636 * 110.48307 * 179.97438 * 13 3 2 16 16 C 1.54489 * 101.76083 * 216.51974 * 15 13 3 17 17 N 1.46764 * 105.47378 * 25.41778 * 16 15 13 18 18 C 1.46497 * 124.34805 * 162.97678 * 17 16 15 19 19 C 1.34416 * 111.29851 * 342.98313 * 17 16 15 20 20 O 1.21286 * 124.93573 * 180.44292 * 19 17 16 21 21 H 1.08998 * 109.47235 * 303.70700 * 1 2 3 22 22 H 1.08997 * 109.46549 * 63.71228 * 1 2 3 23 23 H 1.09004 * 109.46822 * 183.70965 * 1 2 3 24 24 H 1.08996 * 109.47559 * 239.99586 * 2 1 3 25 25 H 1.08999 * 109.47069 * 119.99748 * 2 1 3 26 26 H 0.96998 * 119.99580 * 356.15426 * 8 7 5 27 27 H 1.08992 * 110.97236 * 334.63676 * 15 13 3 28 28 H 1.09000 * 110.96764 * 98.40555 * 15 13 3 29 29 H 1.09002 * 110.23784 * 144.41934 * 16 15 13 30 30 H 1.09000 * 110.24541 * 266.41632 * 16 15 13 31 31 H 1.09008 * 109.46671 * 90.00285 * 18 17 16 32 32 H 1.08995 * 109.47157 * 210.00050 * 18 17 16 33 33 H 1.09001 * 109.47093 * 330.00506 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6132 1.9788 -0.8476 5 6 1.6296 2.1205 1.2818 6 1 2.0290 1.7789 2.2252 7 6 0.7440 3.1768 1.2499 8 7 0.1106 3.4705 0.1354 9 14 0.4439 4.1907 2.7898 10 1 -0.5436 5.2596 2.4941 11 1 -0.0831 3.3130 3.8655 12 1 1.7204 4.8060 3.2340 13 6 3.5659 1.4439 -0.1117 14 1 4.0078 0.8729 0.7048 15 6 4.1069 2.8925 -0.1145 16 6 5.2866 2.7862 -1.1064 17 7 4.9591 1.6570 -1.9847 18 6 5.5960 1.4053 -3.2798 19 6 3.9995 0.8835 -1.4483 20 8 3.5477 -0.1185 -1.9610 21 1 -0.3633 0.5703 0.8549 22 1 -0.3632 0.4551 -0.9214 23 1 -0.3633 -1.0256 0.0665 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 0.3075 2.9801 -0.6780 27 1 3.3527 3.5899 -0.4788 28 1 4.4559 3.1805 0.8772 29 1 5.3738 3.7038 -1.6882 30 1 6.2144 2.5896 -0.5693 31 1 6.4726 0.7734 -3.1368 32 1 4.8897 0.9027 -3.9405 33 1 5.8997 2.3525 -3.7255 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260421619.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:55 Heat of formation + Delta-G solvation = -68.102587 kcal Electronic energy + Delta-G solvation = -14780.833019 eV Core-core repulsion = 12419.159760 eV Total energy + Delta-G solvation = -2361.673259 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.47547 -37.48586 -37.17709 -33.73730 -32.95516 -29.53952 -27.90130 -26.55516 -25.10714 -22.21932 -22.02135 -20.19485 -18.75940 -17.62450 -17.23943 -16.40896 -15.63768 -15.51765 -14.84963 -14.66161 -14.37430 -14.28622 -13.77723 -13.57531 -13.28974 -13.13374 -12.86153 -12.55864 -12.52912 -11.98363 -11.90660 -11.72967 -11.29196 -11.19030 -10.94848 -10.41170 -10.01936 -9.64815 -8.46320 -6.13561 1.59227 1.60872 1.67298 1.84853 2.16812 2.65371 3.31034 3.62143 3.80812 4.00457 4.28881 4.37679 4.40983 4.50412 4.56085 4.65073 4.70183 4.74293 4.80869 5.04047 5.16297 5.22101 5.24526 5.35654 5.52518 5.60249 5.62950 5.72037 6.10298 6.23433 6.33951 6.77655 7.24253 7.63548 8.91394 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.033805 B = 0.011295 C = 0.009274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.082920 B = 2478.357801 C = 3018.464494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.045 3.955 4 H 0.009 0.991 5 C -0.579 4.579 6 H 0.045 0.955 7 C -0.019 4.019 8 N -0.937 5.937 9 Si 1.104 2.896 10 H -0.293 1.293 11 H -0.280 1.280 12 H -0.263 1.263 13 C -0.110 4.110 14 H 0.093 0.907 15 C -0.104 4.104 16 C 0.106 3.894 17 N -0.629 5.629 18 C 0.092 3.908 19 C 0.506 3.494 20 O -0.574 6.574 21 H 0.042 0.958 22 H 0.023 0.977 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.256 0.744 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.609 0.760 -1.445 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.025 3.975 4 H 0.028 0.972 5 C -0.617 4.617 6 H 0.064 0.936 7 C -0.218 4.218 8 N -0.576 5.576 9 Si 0.927 3.073 10 H -0.219 1.219 11 H -0.205 1.205 12 H -0.188 1.188 13 C -0.132 4.132 14 H 0.111 0.889 15 C -0.142 4.142 16 C -0.015 4.015 17 N -0.363 5.363 18 C -0.049 4.049 19 C 0.296 3.704 20 O -0.455 6.455 21 H 0.061 0.939 22 H 0.042 0.958 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.559 1.496 -1.205 10.732 hybrid contribution 0.487 -1.447 -0.830 1.738 sum 11.046 0.049 -2.035 11.232 Atomic orbital electron populations 1.21447 0.96819 0.99471 1.00056 1.21758 0.95525 0.98896 0.99686 1.18789 0.89126 0.92874 0.96674 0.97230 1.21888 1.29736 1.17362 0.92734 0.93630 1.26936 0.92668 0.97491 1.04684 1.70952 1.39909 1.45180 1.01540 0.83103 0.77088 0.75113 0.71991 1.21887 1.20543 1.18814 1.22098 0.99820 0.97734 0.93546 0.88899 1.22365 0.96385 0.94810 1.00621 1.22351 0.98392 0.88901 0.91887 1.48437 1.38588 1.28237 1.21006 1.21693 0.97423 1.03176 0.82618 1.21595 0.78328 0.82365 0.88145 1.90537 1.59183 1.27327 1.68437 0.93858 0.95816 0.92943 0.92872 0.94210 0.93264 0.92841 0.88323 0.88496 0.88568 0.91348 0.92779 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 9.78 71.98 0.70 -5.03 16 2 C -0.12 -5.88 5.26 30.60 0.16 -5.72 16 3 C 0.04 2.24 1.48 -11.54 -0.02 2.23 16 4 H 0.01 0.54 5.82 -2.38 -0.01 0.52 16 5 C -0.58 -30.35 6.53 25.60 0.17 -30.18 16 6 H 0.05 2.38 7.83 -2.91 -0.02 2.36 16 7 C -0.02 -1.03 5.39 84.65 0.46 -0.57 16 8 N -0.94 -55.25 13.64 21.45 0.29 -54.95 16 9 Si 1.10 48.01 29.91 68.60 2.05 50.07 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 13 C -0.11 -4.58 2.50 -10.80 -0.03 -4.61 16 14 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 15 C -0.10 -3.60 6.03 31.66 0.19 -3.41 16 16 C 0.11 2.72 7.35 86.84 0.64 3.35 16 17 N -0.63 -19.77 3.33 -842.89 -2.81 -22.58 16 18 C 0.09 2.19 10.96 127.77 1.40 3.59 16 19 C 0.51 20.86 7.42 87.90 0.65 21.52 16 20 O -0.57 -27.45 14.89 -3.05 -0.05 -27.50 16 21 H 0.04 2.21 7.20 -2.39 -0.02 2.19 16 22 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 24 H 0.05 2.65 5.44 -2.39 -0.01 2.64 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.26 15.56 6.35 -92.71 -0.59 14.97 16 27 H 0.05 2.18 7.91 -2.39 -0.02 2.16 16 28 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.05 1.48 7.93 -2.39 -0.02 1.46 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -66.75 267.56 5.07 -61.68 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.25 Total: 12.13 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 4.33 Total: -18.84 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -2.52 Total: -77.54 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.50 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.05 Total: 50.07 kcal Total: -66.75 5.07 -61.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260421619.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.421 kcal (2) G-P(sol) polarization free energy of solvation -66.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds