Wall clock time and date at job start Mon Mar 30 2020 03:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47387 * 2 1 4 4 H 1.09000 * 109.46758 * 306.06899 * 3 2 1 5 5 C 1.50694 * 109.47060 * 66.06476 * 3 2 1 6 6 H 1.08002 * 119.99960 * 54.46524 * 5 3 2 7 7 C 1.37878 * 120.00295 * 234.73485 * 5 3 2 8 8 N 1.31519 * 120.00119 * 184.25601 * 7 5 3 9 9 Si 1.86799 * 119.99859 * 4.25524 * 7 5 3 10 10 H 1.48499 * 109.46897 * 93.97875 * 9 7 5 11 11 H 1.48501 * 109.47249 * 213.97869 * 9 7 5 12 12 H 1.48495 * 109.47251 * 333.98029 * 9 7 5 13 13 C 1.52994 * 109.47162 * 186.06953 * 3 2 1 14 14 H 1.08999 * 112.73966 * 309.18812 * 13 3 2 15 15 C 1.53498 * 113.46624 * 178.44669 * 13 3 2 16 16 C 1.53612 * 83.30376 * 219.16703 * 15 13 3 17 17 N 1.47060 * 88.00762 * 26.02308 * 16 15 13 18 18 C 1.34777 * 136.06050 * 152.89308 * 17 16 15 19 19 C 1.50694 * 120.00267 * 5.57174 * 18 17 16 20 20 O 1.21285 * 119.99854 * 185.56964 * 18 17 16 21 21 H 1.09000 * 109.47521 * 184.92801 * 1 2 3 22 22 H 1.09003 * 109.46685 * 304.92401 * 1 2 3 23 23 H 1.09001 * 109.47132 * 64.92141 * 1 2 3 24 24 H 1.09000 * 109.47032 * 239.99875 * 2 1 3 25 25 H 1.08999 * 109.47365 * 119.99897 * 2 1 3 26 26 H 0.96997 * 119.99885 * 179.97438 * 8 7 5 27 27 H 1.08994 * 114.20541 * 332.73592 * 15 13 3 28 28 H 1.09002 * 114.20652 * 105.56360 * 15 13 3 29 29 H 1.09003 * 113.41888 * 271.23806 * 16 15 13 30 30 H 1.09004 * 113.55877 * 140.82549 * 16 15 13 31 31 H 1.09001 * 109.47403 * 89.99871 * 19 18 17 32 32 H 1.08994 * 109.47438 * 210.00261 * 19 18 17 33 33 H 1.09007 * 109.47144 * 329.99934 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5907 1.9867 -0.8307 5 6 1.6641 2.1082 1.2986 6 1 1.9451 1.6562 2.2383 7 6 0.9565 3.2916 1.2872 8 7 0.7009 3.9159 2.4162 9 14 0.3610 4.0081 -0.3319 10 1 -1.0310 3.5596 -0.5894 11 1 0.3982 5.4909 -0.2605 12 1 1.2424 3.5433 -1.4329 13 6 3.5624 1.4451 -0.1525 14 1 4.0581 0.7836 0.5579 15 6 4.1693 2.8542 -0.2018 16 6 5.0824 2.2285 -1.2668 17 7 4.0124 1.2574 -1.5400 18 6 3.6174 0.5203 -2.5970 19 6 4.4395 0.5128 -3.8599 20 8 2.6002 -0.1371 -2.5317 21 1 -0.3634 -1.0238 0.0883 22 1 -0.3633 0.5884 0.8426 23 1 -0.3633 0.4356 -0.9308 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.2035 4.7485 2.4080 27 1 3.4937 3.6186 -0.5855 28 1 4.6851 3.1508 0.7115 29 1 5.9838 1.7762 -0.8532 30 1 5.2911 2.8920 -2.1061 31 1 5.1770 -0.2881 -3.8087 32 1 3.7866 0.3512 -4.7176 33 1 4.9496 1.4702 -3.9670 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260427394.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:42 Heat of formation + Delta-G solvation = -5.815490 kcal Electronic energy + Delta-G solvation = -14877.325789 eV Core-core repulsion = 12518.353501 eV Total energy + Delta-G solvation = -2358.972288 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.95164 -37.27115 -34.41148 -31.75532 -30.59990 -28.15224 -27.80846 -24.62728 -22.69917 -21.36663 -19.43012 -18.29735 -16.99592 -16.43003 -15.26958 -15.11815 -14.17428 -13.94825 -13.23601 -12.74472 -12.71148 -12.43628 -12.39077 -12.16461 -11.72138 -11.60932 -11.32088 -10.99975 -10.92589 -10.61806 -10.25099 -9.68132 -9.40086 -9.23177 -8.85166 -8.61616 -8.46419 -8.08344 -6.05312 -4.02073 3.08570 3.28607 3.38684 3.41655 3.42917 4.44579 4.86996 5.05146 5.26862 5.30826 5.43633 5.57752 5.61956 5.78936 5.89930 6.00083 6.21125 6.32807 6.44438 6.53624 6.56321 6.72963 7.03087 7.08923 7.19063 7.47348 7.50621 7.59001 7.86198 8.32276 8.56898 8.75897 9.02307 9.59766 11.07910 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.030389 B = 0.013133 C = 0.011558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.151984 B = 2131.542226 C = 2421.959471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.131 4.131 3 C 0.005 3.995 4 H 0.047 0.953 5 C -0.494 4.494 6 H 0.072 0.928 7 C 0.076 3.924 8 N -0.901 5.901 9 Si 0.866 3.134 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.260 1.260 13 C 0.144 3.856 14 H 0.079 0.921 15 C -0.132 4.132 16 C 0.091 3.909 17 N -0.646 5.646 18 C 0.528 3.472 19 C -0.166 4.166 20 O -0.537 6.537 21 H 0.028 0.972 22 H 0.062 0.938 23 H 0.033 0.967 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.262 0.738 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.255 -2.420 -9.010 13.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.168 4.168 3 C -0.014 4.014 4 H 0.066 0.934 5 C -0.532 4.532 6 H 0.091 0.909 7 C -0.126 4.126 8 N -0.540 5.540 9 Si 0.694 3.306 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.185 1.185 13 C 0.042 3.958 14 H 0.097 0.903 15 C -0.170 4.170 16 C -0.032 4.032 17 N -0.382 5.382 18 C 0.318 3.682 19 C -0.226 4.226 20 O -0.415 6.415 21 H 0.047 0.953 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.554 -2.741 -9.088 12.778 hybrid contribution -0.281 0.531 -0.746 0.958 sum 8.272 -2.211 -9.834 13.039 Atomic orbital electron populations 1.21578 0.97505 0.98908 1.01103 1.21932 0.95327 0.98717 1.00813 1.19528 0.89220 0.94602 0.98089 0.93444 1.20856 1.34462 1.06074 0.91832 0.90947 1.25023 0.95633 0.96379 0.95530 1.69907 1.40890 1.17364 1.25819 0.87053 0.80051 0.77780 0.85713 1.20375 1.21703 1.18480 1.23105 0.99941 0.93519 0.79239 0.90335 1.23252 0.97783 0.97742 0.98242 1.23063 0.92050 0.89861 0.98229 1.50177 1.32065 1.42919 1.13006 1.20207 0.85826 0.78054 0.84148 1.21830 1.01075 1.03481 0.96186 1.90591 1.25448 1.43316 1.82165 0.95284 0.91903 0.94800 0.90460 0.94642 0.92809 0.89347 0.89576 0.90415 0.91415 0.89491 0.89494 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.81 37.16 0.36 -2.70 16 2 C -0.13 -3.06 5.19 -26.73 -0.14 -3.20 16 3 C 0.01 0.12 1.33 -91.78 -0.12 0.00 16 4 H 0.05 1.23 4.31 -51.93 -0.22 1.01 16 5 C -0.49 -13.40 7.33 -34.44 -0.25 -13.65 16 6 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 7 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 9 Si 0.87 21.78 26.91 -169.99 -4.57 17.20 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.26 -6.38 5.99 56.52 0.34 -6.05 16 13 C 0.14 2.90 3.43 -72.40 -0.25 2.65 16 14 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 15 C -0.13 -2.32 7.54 -26.16 -0.20 -2.52 16 16 C 0.09 1.26 8.23 -8.45 -0.07 1.19 16 17 N -0.65 -11.53 3.57 -177.26 -0.63 -12.16 16 18 C 0.53 9.51 8.11 -10.99 -0.09 9.42 16 19 C -0.17 -2.02 10.21 36.00 0.37 -1.65 16 20 O -0.54 -11.83 13.96 5.55 0.08 -11.75 16 21 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 1.54 7.27 -51.93 -0.38 1.16 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.08 1.84 4.46 -51.93 -0.23 1.61 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.09 1.73 7.47 -51.93 -0.39 1.34 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.75 7.78 -51.93 -0.40 0.35 16 LS Contribution 266.07 15.07 4.01 4.01 Total: -1.00 -31.82 266.07 -5.87 -37.69 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.04 Total: -0.40 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.48 Total: -8.44 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.14 Total: -38.32 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.57 Total: 17.20 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.82 -5.87 -37.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427394.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.876 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds