Wall clock time and date at job start Mon Mar 30 2020 03:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47461 * 2 1 4 4 H 1.08998 * 109.46926 * 308.38389 * 3 2 1 5 5 C 1.50693 * 109.46953 * 188.38024 * 3 2 1 6 6 H 1.08008 * 119.99819 * 245.03175 * 5 3 2 7 7 C 1.37874 * 120.00502 * 65.04086 * 5 3 2 8 8 N 1.31517 * 120.00208 * 192.15622 * 7 5 3 9 9 Si 1.86802 * 119.99880 * 12.15423 * 7 5 3 10 10 H 1.48497 * 109.47261 * 94.47860 * 9 7 5 11 11 H 1.48501 * 109.47204 * 214.48455 * 9 7 5 12 12 H 1.48505 * 109.46883 * 334.48288 * 9 7 5 13 13 C 1.52993 * 109.46814 * 68.37974 * 3 2 1 14 14 H 1.09004 * 110.86152 * 57.10246 * 13 3 2 15 15 C 1.54633 * 110.97098 * 180.93266 * 13 3 2 16 16 C 1.51282 * 104.19711 * 142.91728 * 15 13 3 17 17 O 1.21275 * 124.94062 * 163.78542 * 16 15 13 18 18 N 1.34419 * 110.11420 * 343.74718 * 16 15 13 19 19 C 1.46499 * 124.34691 * 179.57201 * 18 16 15 20 20 C 1.46767 * 111.30300 * 359.59456 * 18 16 15 21 21 H 1.09007 * 109.46917 * 288.92663 * 1 2 3 22 22 H 1.08998 * 109.47333 * 48.92423 * 1 2 3 23 23 H 1.09001 * 109.47541 * 168.92978 * 1 2 3 24 24 H 1.09011 * 109.47182 * 240.00274 * 2 1 3 25 25 H 1.08999 * 109.47444 * 120.00636 * 2 1 3 26 26 H 0.97006 * 119.99731 * 179.97438 * 8 7 5 27 27 H 1.09003 * 110.48267 * 261.59810 * 15 13 3 28 28 H 1.08999 * 110.48221 * 24.23398 * 15 13 3 29 29 H 1.08996 * 109.47115 * 270.02288 * 19 18 16 30 30 H 1.08998 * 109.47396 * 30.02735 * 19 18 16 31 31 H 1.08999 * 109.47102 * 150.02100 * 19 18 16 32 32 H 1.09005 * 110.24266 * 258.01500 * 20 18 16 33 33 H 1.08999 * 110.24095 * 136.01890 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5596 1.9977 -0.8055 5 6 3.5327 1.4474 -0.2071 6 1 4.1854 1.8024 0.5768 7 6 4.0651 0.9991 -1.3972 8 7 5.3575 0.7764 -1.4969 9 14 2.9509 0.7078 -2.8680 10 1 2.9378 1.9192 -3.7267 11 1 3.4565 -0.4485 -3.6507 12 1 1.5725 0.4210 -2.3956 13 6 1.7090 2.1004 1.3410 14 1 2.1366 1.5332 2.1677 15 6 2.1896 3.5699 1.3701 16 6 1.1132 4.2970 2.1456 17 8 1.2337 5.4010 2.6327 18 7 0.0035 3.5416 2.2153 19 6 -1.2266 3.9414 2.9032 20 6 0.1827 2.2647 1.5143 21 1 -0.3633 0.3334 0.9722 22 1 -0.3634 0.6752 -0.7747 23 1 -0.3634 -1.0085 -0.1973 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 5.7320 0.4606 -2.3342 27 1 3.1481 3.6476 1.8833 28 1 2.2646 3.9668 0.3577 29 1 -1.1855 3.6128 3.9416 30 1 -1.3258 5.0264 2.8691 31 1 -2.0839 3.4827 2.4105 32 1 -0.3062 2.2971 0.5406 33 1 -0.2193 1.4467 2.1121 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260430775.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:11 Heat of formation + Delta-G solvation = -58.121309 kcal Electronic energy + Delta-G solvation = -14634.870027 eV Core-core repulsion = 12273.629589 eV Total energy + Delta-G solvation = -2361.240438 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.45778 -38.42375 -36.30937 -34.10346 -32.92723 -29.81117 -28.21321 -27.11399 -24.86096 -22.49214 -20.94173 -20.52229 -18.84026 -17.62144 -17.20844 -16.39322 -16.24925 -15.50867 -14.84411 -14.73728 -14.57757 -14.38207 -13.77187 -13.59587 -13.23498 -13.08342 -12.79847 -12.66133 -12.59402 -12.14358 -11.78632 -11.53826 -11.42399 -11.08570 -10.93072 -10.57287 -10.46084 -9.64319 -8.21663 -6.21166 1.39802 1.45003 1.53556 1.55003 2.15948 2.43004 3.14809 3.54191 3.72738 3.94870 4.23427 4.44346 4.51136 4.58322 4.60328 4.69919 4.73642 4.82131 4.88273 4.98702 5.01640 5.09996 5.33588 5.41488 5.47737 5.60146 5.65682 5.75643 5.93436 6.09594 6.41012 6.86482 7.16786 7.43132 8.95020 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.037489 B = 0.010315 C = 0.008881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.703571 B = 2713.879509 C = 3152.096512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.124 4.124 3 C 0.030 3.970 4 H 0.031 0.969 5 C -0.510 4.510 6 H 0.033 0.967 7 C 0.012 3.988 8 N -0.952 5.952 9 Si 0.922 3.078 10 H -0.286 1.286 11 H -0.297 1.297 12 H -0.209 1.209 13 C -0.073 4.073 14 H 0.079 0.921 15 C -0.138 4.138 16 C 0.510 3.490 17 O -0.588 6.588 18 N -0.621 5.621 19 C 0.090 3.910 20 C 0.105 3.895 21 H 0.083 0.917 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.053 0.947 26 H 0.261 0.739 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 -0.819 4.295 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.162 4.162 3 C 0.011 3.989 4 H 0.049 0.951 5 C -0.548 4.548 6 H 0.052 0.948 7 C -0.185 4.185 8 N -0.592 5.592 9 Si 0.746 3.254 10 H -0.213 1.213 11 H -0.224 1.224 12 H -0.130 1.130 13 C -0.092 4.092 14 H 0.098 0.902 15 C -0.179 4.179 16 C 0.299 3.701 17 O -0.470 6.470 18 N -0.354 5.354 19 C -0.051 4.051 20 C -0.016 4.016 21 H 0.102 0.898 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.838 -0.309 4.489 16.465 hybrid contribution 0.741 -0.036 -0.894 1.162 sum -15.097 -0.346 3.596 15.523 Atomic orbital electron populations 1.22251 0.94850 1.01747 1.02954 1.21895 0.95982 0.97717 1.00572 1.19109 0.93708 0.93347 0.92723 0.95071 1.21296 0.92112 1.41124 1.00274 0.94819 1.25844 0.95925 0.94768 1.01963 1.70120 1.14327 1.47804 1.26976 0.86279 0.82823 0.77096 0.79168 1.21306 1.22362 1.13048 1.21978 0.93860 0.93642 0.99697 0.90248 1.22235 0.97470 0.96853 1.01296 1.21317 0.85344 0.84495 0.78916 1.90619 1.83110 1.21519 1.51760 1.48492 1.13749 1.19443 1.53705 1.21743 0.85064 1.01060 0.97257 1.22939 0.96462 0.84291 0.97882 0.89839 0.92831 0.92619 0.94519 0.92819 0.93037 0.89972 0.88519 0.91621 0.92069 0.87840 0.89291 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 8.42 71.98 0.61 -3.37 16 2 C -0.12 -4.32 4.53 30.59 0.14 -4.18 16 3 C 0.03 1.19 0.86 -11.54 -0.01 1.18 16 4 H 0.03 1.22 6.69 -2.39 -0.02 1.21 16 5 C -0.51 -26.67 8.45 25.60 0.22 -26.45 16 6 H 0.03 1.98 7.86 -2.91 -0.02 1.96 16 7 C 0.01 0.64 5.35 84.65 0.45 1.09 16 8 N -0.95 -58.26 13.96 21.45 0.30 -57.96 16 9 Si 0.92 41.30 25.71 68.60 1.76 43.06 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.21 -7.96 5.37 99.48 0.53 -7.42 16 13 C -0.07 -2.43 2.62 -9.74 -0.03 -2.45 16 14 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 15 C -0.14 -5.10 5.71 30.59 0.17 -4.92 16 16 C 0.51 18.29 8.02 87.90 0.71 19.00 16 17 O -0.59 -25.15 17.59 -3.01 -0.05 -25.20 16 18 N -0.62 -16.98 3.33 -842.91 -2.81 -19.79 16 19 C 0.09 1.77 10.96 127.77 1.40 3.17 16 20 C 0.11 2.58 4.91 86.83 0.43 3.00 16 21 H 0.08 1.62 4.62 -2.38 -0.01 1.61 16 22 H 0.05 1.28 7.55 -2.39 -0.02 1.27 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.04 1.42 4.82 -2.38 -0.01 1.41 16 25 H 0.05 1.87 8.13 -2.39 -0.02 1.85 16 26 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 27 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 28 H 0.10 3.73 7.90 -2.39 -0.02 3.71 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.35 7.92 -2.39 -0.02 1.33 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 2.01 6.38 -2.38 -0.02 2.00 16 33 H 0.11 2.04 6.52 -2.39 -0.02 2.03 16 Total: -1.00 -68.28 257.43 4.20 -64.09 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.91 Total: 9.74 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 4.09 Total: -13.94 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -2.51 Total: -77.75 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.76 Total: 43.06 kcal Total: -68.28 4.20 -64.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260430775.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.964 kcal (2) G-P(sol) polarization free energy of solvation -68.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds