Wall clock time and date at job start Mon Mar 30 2020 02:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47158 * 2 1 4 4 C 1.52993 * 109.47245 * 120.00393 * 2 1 3 5 5 H 1.09000 * 109.47189 * 56.45706 * 4 2 1 6 6 C 1.50704 * 109.47455 * 176.45279 * 4 2 1 7 7 H 1.07996 * 120.00150 * 114.29189 * 6 4 2 8 8 C 1.37878 * 119.99908 * 294.30668 * 6 4 2 9 9 N 1.31512 * 119.99932 * 0.89777 * 8 6 4 10 10 Si 1.86799 * 119.99790 * 180.90542 * 8 6 4 11 11 H 1.48500 * 109.47378 * 89.99508 * 10 8 6 12 12 H 1.48496 * 109.47063 * 209.99208 * 10 8 6 13 13 H 1.48496 * 109.47197 * 329.99565 * 10 8 6 14 14 C 1.52995 * 109.47158 * 296.45395 * 4 2 1 15 15 H 1.09001 * 110.85972 * 310.22211 * 14 4 2 16 16 C 1.54489 * 110.97126 * 186.42831 * 14 4 2 17 17 N 1.46759 * 105.47443 * 216.43030 * 16 14 4 18 18 C 1.34425 * 111.30155 * 17.01590 * 17 16 14 19 19 O 1.21284 * 124.93962 * 179.55724 * 18 17 16 20 20 C 1.51284 * 110.11619 * 359.82046 * 18 17 16 21 21 H 1.08994 * 109.47408 * 70.68062 * 1 2 3 22 22 H 1.08997 * 109.47283 * 190.67900 * 1 2 3 23 23 H 1.09003 * 109.47191 * 310.67616 * 1 2 3 24 24 H 1.09004 * 109.47081 * 240.00553 * 2 1 3 25 25 H 1.09001 * 109.47437 * 181.20130 * 3 2 1 26 26 H 1.08997 * 109.47649 * 301.20634 * 3 2 1 27 27 H 1.09005 * 109.46989 * 61.20360 * 3 2 1 28 28 H 0.97008 * 119.99832 * 180.02562 * 9 8 6 29 29 H 1.08999 * 110.24604 * 97.42619 * 16 14 4 30 30 H 1.09001 * 110.24215 * 335.42786 * 16 14 4 31 31 H 0.96999 * 124.35305 * 196.99497 * 17 16 14 32 32 H 1.09004 * 110.48460 * 102.19491 * 20 18 17 33 33 H 1.08992 * 110.48786 * 224.84211 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6258 -1.7290 1.2814 6 6 3.5445 -0.7979 1.2060 7 1 4.1335 -0.2652 1.9379 8 6 4.1689 -1.5478 0.2320 9 7 3.4522 -2.1819 -0.6701 10 14 6.0330 -1.6632 0.1938 11 1 6.4744 -2.8184 1.0159 12 1 6.4888 -1.8499 -1.2071 13 1 6.6176 -0.4132 0.7423 14 6 1.6042 0.0495 2.4968 15 1 1.8513 1.1072 2.4056 16 6 2.2342 -0.5577 3.7700 17 7 1.2071 -0.4365 4.8112 18 6 -0.0054 -0.2098 4.2770 19 8 -1.0304 -0.0774 4.9117 20 6 0.0935 -0.1501 2.7686 21 1 -0.3634 0.3400 -0.9697 22 1 -0.3634 -1.0098 0.1904 23 1 -0.3634 0.6698 0.7794 24 1 1.8933 -0.5138 -0.8901 25 1 3.1298 1.4426 -0.0215 26 1 1.6592 1.9626 -0.8789 27 1 1.6944 1.9500 0.9006 28 1 3.8915 -2.7098 -1.3552 29 1 3.1261 0.0014 4.0530 30 1 2.4821 -1.6062 3.6049 31 1 1.3807 -0.5108 5.7626 32 1 -0.2560 -1.0830 2.3262 33 1 -0.4774 0.6940 2.3819 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446594.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:01 Heat of formation + Delta-G solvation = -54.489303 kcal Electronic energy + Delta-G solvation = -14785.338552 eV Core-core repulsion = 12424.255610 eV Total energy + Delta-G solvation = -2361.082943 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.86507 -36.99652 -34.91056 -32.22241 -30.35839 -28.35514 -26.05466 -25.73207 -23.27103 -20.59680 -20.00873 -18.32174 -16.86413 -16.21876 -15.29085 -14.62256 -14.51417 -14.10400 -13.28091 -13.10273 -12.76865 -12.45313 -12.19731 -11.73121 -11.48113 -11.31351 -10.98956 -10.83061 -10.65543 -10.42289 -10.06765 -9.76279 -9.56499 -9.51875 -8.87764 -8.73934 -8.59471 -8.36893 -6.06246 -4.11021 3.05191 3.25256 3.33793 3.35254 3.88466 4.37368 5.04557 5.24663 5.30801 5.51499 5.80922 6.08604 6.11955 6.21906 6.24622 6.29096 6.47628 6.49840 6.61267 6.72714 6.81844 6.95895 6.96576 7.23979 7.36933 7.43410 7.49542 7.69784 7.85089 8.02189 8.34743 8.69629 8.91771 9.53427 11.00721 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.033758 B = 0.010850 C = 0.009070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.241163 B = 2580.071765 C = 3086.442604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.066 3.934 5 H 0.034 0.966 6 C -0.511 4.511 7 H 0.056 0.944 8 C 0.065 3.935 9 N -0.886 5.886 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 C -0.089 4.089 15 H 0.080 0.920 16 C 0.111 3.889 17 N -0.736 5.736 18 C 0.514 3.486 19 O -0.561 6.561 20 C -0.155 4.155 21 H 0.031 0.969 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.024 0.976 27 H 0.036 0.964 28 H 0.260 0.740 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.399 0.601 32 H 0.103 0.897 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 3.372 3.577 5.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 C -0.188 4.188 4 C 0.047 3.953 5 H 0.052 0.948 6 C -0.549 4.549 7 H 0.074 0.926 8 C -0.137 4.137 9 N -0.525 5.525 10 Si 0.713 3.287 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.200 1.200 14 C -0.107 4.107 15 H 0.099 0.901 16 C -0.012 4.012 17 N -0.390 5.390 18 C 0.302 3.698 19 O -0.440 6.440 20 C -0.194 4.194 21 H 0.050 0.950 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.111 0.889 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.236 0.764 32 H 0.121 0.879 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.848 3.329 3.603 5.242 hybrid contribution 1.278 -0.194 0.252 1.317 sum -0.570 3.135 3.854 5.000 Atomic orbital electron populations 1.22250 0.98886 1.00401 0.99569 1.21128 0.91452 0.95222 1.03062 1.21765 1.01778 0.97017 0.98257 1.18753 0.95528 0.93701 0.87300 0.94773 1.21081 0.91024 1.29441 1.13362 0.92566 1.24923 0.97648 0.95501 0.95617 1.69899 1.34926 1.31658 1.15981 0.86712 0.86395 0.78376 0.77212 1.20824 1.21389 1.19966 1.22448 0.90778 1.01256 0.96252 0.90134 1.22245 0.89870 1.02404 0.86687 1.46474 1.09964 1.72942 1.09610 1.21352 0.82697 0.74052 0.91724 1.90669 1.32333 1.52253 1.68793 1.22845 1.00207 1.04660 0.91732 0.94978 0.93609 0.93331 0.88913 0.92194 0.95645 0.94502 0.92991 0.91068 0.90200 0.76373 0.87896 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 7.81 37.16 0.29 -2.46 16 2 C -0.09 -1.85 2.59 -90.63 -0.23 -2.09 16 3 C -0.13 -2.48 8.58 37.16 0.32 -2.16 16 4 C 0.07 1.40 1.10 -91.78 -0.10 1.30 16 5 H 0.03 0.82 7.88 -51.93 -0.41 0.41 16 6 C -0.51 -12.09 6.66 -34.44 -0.23 -12.32 16 7 H 0.06 1.30 7.31 -52.49 -0.38 0.92 16 8 C 0.06 1.63 5.32 -17.82 -0.09 1.54 16 9 N -0.89 -23.45 11.70 55.43 0.65 -22.81 16 10 Si 0.88 19.79 29.54 -169.99 -5.02 14.76 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 C -0.09 -1.58 2.39 -88.90 -0.21 -1.79 16 15 H 0.08 1.42 5.92 -51.93 -0.31 1.12 16 16 C 0.11 1.83 6.29 -3.12 -0.02 1.81 16 17 N -0.74 -11.47 6.24 -59.20 -0.37 -11.84 16 18 C 0.51 9.27 8.43 -10.86 -0.09 9.18 16 19 O -0.56 -11.83 18.03 5.55 0.10 -11.73 16 20 C -0.15 -2.62 4.53 -26.65 -0.12 -2.74 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.04 0.82 7.49 -51.93 -0.39 0.43 16 23 H 0.05 0.79 4.98 -51.93 -0.26 0.53 16 24 H 0.09 2.25 6.43 -51.93 -0.33 1.92 16 25 H 0.06 1.23 7.37 -51.93 -0.38 0.84 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.63 6.09 -51.93 -0.32 0.32 16 28 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 30 H 0.08 1.41 7.76 -51.93 -0.40 1.00 16 31 H 0.40 5.30 8.96 -40.82 -0.37 4.93 16 32 H 0.10 1.77 6.83 -51.93 -0.35 1.41 16 33 H 0.10 1.54 6.23 -51.93 -0.32 1.22 16 LS Contribution 256.45 15.07 3.86 3.86 Total: -1.00 -27.13 256.45 -5.90 -33.03 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.63 Total: 4.45 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -0.49 Total: -9.74 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.28 Total: -34.64 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.10 Total: -11.73 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.13 -5.90 -33.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446594.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.455 kcal (2) G-P(sol) polarization free energy of solvation -27.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds