Wall clock time and date at job start Mon Mar 30 2020 02:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47158 * 2 1 4 4 C 1.52993 * 109.47245 * 120.00393 * 2 1 3 5 5 H 1.09000 * 109.47189 * 56.45706 * 4 2 1 6 6 C 1.50704 * 109.47455 * 176.45279 * 4 2 1 7 7 H 1.07996 * 120.00150 * 114.29189 * 6 4 2 8 8 C 1.37878 * 119.99908 * 294.30668 * 6 4 2 9 9 N 1.31512 * 119.99932 * 0.89777 * 8 6 4 10 10 Si 1.86799 * 119.99790 * 180.90542 * 8 6 4 11 11 H 1.48500 * 109.47378 * 89.99508 * 10 8 6 12 12 H 1.48496 * 109.47063 * 209.99208 * 10 8 6 13 13 H 1.48496 * 109.47197 * 329.99565 * 10 8 6 14 14 C 1.52995 * 109.47158 * 296.45395 * 4 2 1 15 15 H 1.09001 * 110.85972 * 310.22211 * 14 4 2 16 16 C 1.54489 * 110.97126 * 186.42831 * 14 4 2 17 17 N 1.46759 * 105.47443 * 216.43030 * 16 14 4 18 18 C 1.34425 * 111.30155 * 17.01590 * 17 16 14 19 19 O 1.21284 * 124.93962 * 179.55724 * 18 17 16 20 20 C 1.51284 * 110.11619 * 359.82046 * 18 17 16 21 21 H 1.08994 * 109.47408 * 70.68062 * 1 2 3 22 22 H 1.08997 * 109.47283 * 190.67900 * 1 2 3 23 23 H 1.09003 * 109.47191 * 310.67616 * 1 2 3 24 24 H 1.09004 * 109.47081 * 240.00553 * 2 1 3 25 25 H 1.09001 * 109.47437 * 181.20130 * 3 2 1 26 26 H 1.08997 * 109.47649 * 301.20634 * 3 2 1 27 27 H 1.09005 * 109.46989 * 61.20360 * 3 2 1 28 28 H 0.97008 * 119.99832 * 180.02562 * 9 8 6 29 29 H 1.08999 * 110.24604 * 97.42619 * 16 14 4 30 30 H 1.09001 * 110.24215 * 335.42786 * 16 14 4 31 31 H 0.96999 * 124.35305 * 196.99497 * 17 16 14 32 32 H 1.09004 * 110.48460 * 102.19491 * 20 18 17 33 33 H 1.08992 * 110.48786 * 224.84211 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6258 -1.7290 1.2814 6 6 3.5445 -0.7979 1.2060 7 1 4.1335 -0.2652 1.9379 8 6 4.1689 -1.5478 0.2320 9 7 3.4522 -2.1819 -0.6701 10 14 6.0330 -1.6632 0.1938 11 1 6.4744 -2.8184 1.0159 12 1 6.4888 -1.8499 -1.2071 13 1 6.6176 -0.4132 0.7423 14 6 1.6042 0.0495 2.4968 15 1 1.8513 1.1072 2.4056 16 6 2.2342 -0.5577 3.7700 17 7 1.2071 -0.4365 4.8112 18 6 -0.0054 -0.2098 4.2770 19 8 -1.0304 -0.0774 4.9117 20 6 0.0935 -0.1501 2.7686 21 1 -0.3634 0.3400 -0.9697 22 1 -0.3634 -1.0098 0.1904 23 1 -0.3634 0.6698 0.7794 24 1 1.8933 -0.5138 -0.8901 25 1 3.1298 1.4426 -0.0215 26 1 1.6592 1.9626 -0.8789 27 1 1.6944 1.9500 0.9006 28 1 3.8915 -2.7098 -1.3552 29 1 3.1261 0.0014 4.0530 30 1 2.4821 -1.6062 3.6049 31 1 1.3807 -0.5108 5.7626 32 1 -0.2560 -1.0830 2.3262 33 1 -0.4774 0.6940 2.3819 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446594.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:01 Heat of formation + Delta-G solvation = -71.831482 kcal Electronic energy + Delta-G solvation = -14786.090566 eV Core-core repulsion = 12424.255610 eV Total energy + Delta-G solvation = -2361.834956 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.30672 -38.57380 -36.42292 -34.06459 -31.80672 -29.93957 -27.56343 -27.30259 -24.99461 -22.08447 -21.40040 -19.97073 -18.34103 -17.94230 -16.85690 -16.36877 -15.92439 -15.66232 -14.86274 -14.66685 -14.29581 -13.96875 -13.72568 -13.36228 -12.99303 -12.79379 -12.77498 -12.45930 -12.26752 -12.02281 -11.65958 -11.37451 -11.20727 -11.10588 -10.48936 -10.42883 -10.24443 -9.96042 -7.97547 -6.05412 1.46652 1.51168 1.56855 1.62395 2.51951 2.57160 3.34263 3.63858 3.88747 4.08839 4.37830 4.63251 4.69701 4.72853 4.82162 4.83067 5.04319 5.11431 5.12314 5.21655 5.29288 5.42883 5.48190 5.73862 5.82246 5.88599 5.93681 6.07399 6.12829 6.28998 6.51336 7.06381 7.34105 7.61166 9.08487 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.033758 B = 0.010850 C = 0.009070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.241163 B = 2580.071765 C = 3086.442604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.124 4.124 4 C 0.069 3.931 5 H 0.001 0.999 6 C -0.506 4.506 7 H 0.063 0.937 8 C 0.017 3.983 9 N -0.918 5.918 10 Si 0.936 3.064 11 H -0.282 1.282 12 H -0.297 1.297 13 H -0.266 1.266 14 C -0.083 4.083 15 H 0.091 0.909 16 C 0.116 3.884 17 N -0.720 5.720 18 C 0.513 3.487 19 O -0.592 6.592 20 C -0.148 4.148 21 H 0.041 0.959 22 H 0.038 0.962 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.255 0.745 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.413 0.587 32 H 0.099 0.901 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 4.637 4.562 6.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.181 4.181 4 C 0.050 3.950 5 H 0.020 0.980 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.182 4.182 9 N -0.558 5.558 10 Si 0.764 3.236 11 H -0.208 1.208 12 H -0.223 1.223 13 H -0.190 1.190 14 C -0.102 4.102 15 H 0.109 0.891 16 C -0.007 4.007 17 N -0.373 5.373 18 C 0.301 3.699 19 O -0.475 6.475 20 C -0.187 4.187 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.252 0.748 32 H 0.117 0.883 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.671 4.599 4.614 6.726 hybrid contribution 1.241 -0.604 -0.049 1.381 sum -0.430 3.995 4.565 6.082 Atomic orbital electron populations 1.22152 0.96647 1.00608 1.00922 1.21018 0.93422 0.95801 1.00826 1.21678 1.00431 0.96020 0.99996 1.18628 0.94179 0.92722 0.89494 0.98043 1.21444 0.92488 1.28031 1.12428 0.91907 1.25555 1.00805 0.95956 0.95858 1.70040 1.36037 1.32945 1.16808 0.85896 0.82747 0.78471 0.76517 1.20843 1.22320 1.19013 1.22285 0.91564 1.01186 0.95158 0.89075 1.22153 0.90435 1.01835 0.86327 1.46335 1.09007 1.71651 1.10317 1.21440 0.82721 0.73750 0.91988 1.90661 1.33454 1.53957 1.69390 1.22788 0.99604 1.05112 0.91242 0.94016 0.94336 0.91223 0.92975 0.94177 0.94274 0.92379 0.93617 0.89197 0.91477 0.74782 0.88310 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 7.81 71.98 0.56 -4.43 16 2 C -0.09 -3.72 2.59 -10.80 -0.03 -3.75 16 3 C -0.12 -4.46 8.58 71.98 0.62 -3.84 16 4 C 0.07 2.88 1.10 -11.54 -0.01 2.86 16 5 H 0.00 0.07 7.88 -2.39 -0.02 0.05 16 6 C -0.51 -23.58 6.66 25.60 0.17 -23.41 16 7 H 0.06 2.80 7.31 -2.91 -0.02 2.78 16 8 C 0.02 0.83 5.32 84.66 0.45 1.28 16 9 N -0.92 -49.68 11.70 21.45 0.25 -49.43 16 10 Si 0.94 40.52 29.54 68.60 2.03 42.55 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.30 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 14 C -0.08 -2.78 2.39 -9.68 -0.02 -2.80 16 15 H 0.09 2.90 5.92 -2.39 -0.01 2.89 16 16 C 0.12 3.53 6.29 86.84 0.55 4.08 16 17 N -0.72 -20.59 6.24 -459.78 -2.87 -23.46 16 18 C 0.51 17.38 8.43 87.90 0.74 18.12 16 19 O -0.59 -23.95 18.03 -3.04 -0.05 -24.01 16 20 C -0.15 -4.68 4.53 30.64 0.14 -4.54 16 21 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.04 1.34 7.49 -2.39 -0.02 1.33 16 23 H 0.07 2.06 4.98 -2.39 -0.01 2.05 16 24 H 0.05 2.57 6.43 -2.39 -0.02 2.55 16 25 H 0.04 1.58 7.37 -2.39 -0.02 1.56 16 26 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.82 6.09 -2.38 -0.01 1.81 16 28 H 0.25 13.48 8.31 -92.70 -0.77 12.71 16 29 H 0.09 2.45 8.09 -2.39 -0.02 2.44 16 30 H 0.07 2.26 7.76 -2.39 -0.02 2.24 16 31 H 0.41 9.83 8.96 -92.71 -0.83 8.99 16 32 H 0.10 3.26 6.83 -2.38 -0.02 3.25 16 33 H 0.11 3.19 6.23 -2.39 -0.01 3.18 16 Total: -1.00 -57.40 256.45 2.80 -54.60 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.28 Total: 16.17 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 3.16 Total: -16.43 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -2.62 Total: -72.88 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -57.40 2.80 -54.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446594.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.230 kcal (2) G-P(sol) polarization free energy of solvation -57.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds