Wall clock time and date at job start Mon Mar 30 2020 03:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46846 * 2 1 4 4 H 1.09005 * 109.47506 * 305.59045 * 3 2 1 5 5 C 1.50697 * 109.47418 * 65.59773 * 3 2 1 6 6 H 1.07997 * 120.00541 * 55.29068 * 5 3 2 7 7 C 1.37882 * 119.99811 * 235.28896 * 5 3 2 8 8 N 1.31514 * 119.99772 * 5.66411 * 7 5 3 9 9 Si 1.86798 * 119.99972 * 185.65809 * 7 5 3 10 10 H 1.48502 * 109.47097 * 90.00372 * 9 7 5 11 11 H 1.48502 * 109.47223 * 210.00066 * 9 7 5 12 12 H 1.48501 * 109.47455 * 330.00242 * 9 7 5 13 13 C 1.53007 * 109.46909 * 185.59217 * 3 2 1 14 14 C 1.53499 * 114.20817 * 179.97438 * 13 3 2 15 15 N 1.47063 * 88.04747 * 220.37774 * 14 13 3 16 16 C 1.34777 * 136.05397 * 207.05681 * 15 14 13 17 17 C 1.50700 * 119.99895 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99989 * 0.02562 * 16 15 14 19 19 C 1.47067 * 87.88881 * 27.09126 * 15 14 13 20 20 H 1.09005 * 109.46956 * 54.43393 * 1 2 3 21 21 H 1.09003 * 109.46848 * 174.42696 * 1 2 3 22 22 H 1.08998 * 109.47284 * 294.43042 * 1 2 3 23 23 H 1.08998 * 109.47152 * 239.99795 * 2 1 3 24 24 H 1.09001 * 109.46901 * 119.99997 * 2 1 3 25 25 H 0.96999 * 119.99591 * 179.97438 * 8 7 5 26 26 H 1.09001 * 113.41259 * 313.20384 * 13 3 2 27 27 H 1.08995 * 113.46375 * 105.56381 * 14 13 3 28 28 H 1.09004 * 113.46689 * 335.18641 * 14 13 3 29 29 H 1.08994 * 109.47430 * 59.99799 * 17 16 15 30 30 H 1.09004 * 109.47302 * 180.02562 * 17 16 15 31 31 H 1.09008 * 109.47167 * 299.99866 * 17 16 15 32 32 H 1.08996 * 113.46599 * 87.66019 * 19 15 14 33 33 H 1.09002 * 113.46888 * 218.04200 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 1.6540 2.1118 1.2938 6 1 1.9393 1.6694 2.2368 7 6 0.9366 3.2891 1.2737 8 7 0.4932 3.7695 0.1326 9 14 0.5943 4.2016 2.8673 10 1 1.6927 5.1654 3.1316 11 1 -0.6912 4.9359 2.7510 12 1 0.5092 3.2290 3.9863 13 6 3.5636 1.4448 -0.1406 14 6 4.1923 2.8450 -0.1536 15 7 5.1006 2.3724 -1.2093 16 6 6.3387 2.6888 -1.6375 17 6 6.9482 1.9439 -2.7971 18 8 6.9624 3.5730 -1.0896 19 6 4.0629 1.4034 -1.5927 20 1 -0.3633 0.5978 -0.8360 21 1 -0.3633 -1.0228 -0.0998 22 1 -0.3634 0.4250 0.9356 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 -0.0118 4.5975 0.1185 26 1 4.0608 0.7373 0.5230 27 1 4.7021 3.1005 0.7754 28 1 3.5079 3.6251 -0.4869 29 1 6.3231 2.0728 -3.6807 30 1 7.9455 2.3358 -2.9969 31 1 7.0171 0.8840 -2.5523 32 1 3.3434 1.7988 -2.3096 33 1 4.4628 0.4334 -1.8885 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260514193.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:15 Heat of formation + Delta-G solvation = -19.761914 kcal Electronic energy + Delta-G solvation = -14313.746607 eV Core-core repulsion = 11954.169557 eV Total energy + Delta-G solvation = -2359.577050 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.76712 -37.49412 -34.46877 -31.72633 -30.61233 -28.49301 -26.26377 -25.12949 -23.71595 -20.76626 -19.27083 -18.36163 -16.58210 -16.39629 -15.25617 -15.13968 -14.45416 -13.95352 -13.40364 -12.81266 -12.65318 -12.28402 -12.16361 -12.02727 -11.89223 -11.57878 -11.00579 -10.97404 -10.84896 -10.41463 -10.28073 -10.01641 -9.71511 -9.24185 -9.01130 -8.80320 -8.51167 -8.10714 -6.06937 -4.07572 3.02045 3.29083 3.37086 3.39400 3.43931 4.40445 4.90123 5.15717 5.35386 5.38312 5.48783 5.73924 5.81636 5.91282 5.97062 6.21368 6.23223 6.26361 6.43304 6.45837 6.57765 6.79517 6.90952 7.09133 7.14355 7.33810 7.52010 7.78128 7.87652 8.29193 8.39756 8.57953 9.02789 9.55432 11.01594 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.030113 B = 0.009750 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.608233 B = 2871.058194 C = 3535.238841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C 0.039 3.961 4 H 0.074 0.926 5 C -0.505 4.505 6 H 0.052 0.948 7 C 0.070 3.930 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.274 1.274 13 C -0.101 4.101 14 C 0.124 3.876 15 N -0.649 5.649 16 C 0.529 3.471 17 C -0.165 4.165 18 O -0.564 6.564 19 C 0.097 3.903 20 H 0.046 0.954 21 H 0.022 0.978 22 H 0.059 0.941 23 H 0.027 0.973 24 H 0.040 0.960 25 H 0.261 0.739 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 -6.129 -4.789 8.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.144 4.144 3 C 0.020 3.980 4 H 0.092 0.908 5 C -0.543 4.543 6 H 0.071 0.929 7 C -0.132 4.132 8 N -0.530 5.530 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.121 4.121 14 C 0.003 3.997 15 N -0.384 5.384 16 C 0.319 3.681 17 C -0.225 4.225 18 O -0.444 6.444 19 C -0.026 4.026 20 H 0.066 0.934 21 H 0.041 0.959 22 H 0.078 0.922 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.798 -5.446 -4.660 8.625 hybrid contribution -0.233 0.602 0.803 1.031 sum 4.564 -4.844 -3.856 7.692 Atomic orbital electron populations 1.21526 0.96729 0.97825 1.02579 1.21553 0.95640 0.99194 0.98056 1.18989 0.87118 0.92147 0.99783 0.90777 1.20962 1.34321 1.06869 0.92169 0.92937 1.24907 0.95173 0.97364 0.95791 1.69874 1.36974 1.21292 1.24816 0.86741 0.77673 0.80185 0.84323 1.20613 1.21364 1.19928 1.23202 1.00795 0.95450 0.92652 1.22970 0.88309 0.98932 0.89537 1.49991 1.13278 1.38950 1.36169 1.20277 0.80187 0.83209 0.84427 1.21820 1.02212 1.01445 0.96988 1.90679 1.61565 1.33101 1.59075 1.23365 0.87810 0.91442 1.00016 0.93439 0.95909 0.92215 0.95453 0.94147 0.92908 0.90165 0.91833 0.88933 0.89860 0.89501 0.89903 0.89828 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.64 37.16 0.36 -2.15 16 2 C -0.11 -2.05 5.39 -26.73 -0.14 -2.20 16 3 C 0.04 0.84 1.93 -91.77 -0.18 0.66 16 4 H 0.07 1.79 6.68 -51.93 -0.35 1.44 16 5 C -0.51 -12.50 6.92 -34.44 -0.24 -12.73 16 6 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 7 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 8 N -0.89 -23.83 12.62 55.43 0.70 -23.13 16 9 Si 0.88 20.53 29.54 -169.99 -5.02 15.50 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 C -0.10 -1.94 3.46 -90.04 -0.31 -2.25 16 14 C 0.12 2.57 7.67 -8.50 -0.07 2.51 16 15 N -0.65 -12.01 3.69 -185.00 -0.68 -12.69 16 16 C 0.53 9.67 8.19 -10.99 -0.09 9.58 16 17 C -0.17 -2.05 10.15 36.01 0.37 -1.68 16 18 O -0.56 -12.69 17.86 5.55 0.10 -12.59 16 19 C 0.10 1.57 8.00 -8.44 -0.07 1.50 16 20 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 21 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.06 1.26 7.58 -51.93 -0.39 0.87 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.09 2.12 8.10 -51.93 -0.42 1.70 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 31 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.08 1.36 7.93 -51.93 -0.41 0.95 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 279.65 15.07 4.21 4.21 Total: -1.00 -28.54 279.65 -6.50 -35.05 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.34 Total: -1.30 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.47 Total: -5.06 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.02 Total: -35.82 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.10 Total: -12.59 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.54 -6.50 -35.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514193.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.284 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds