Wall clock time and date at job start Mon Mar 30 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 6 6 H 1.08996 * 110.85806 * 183.78762 * 5 2 1 7 7 C 1.54634 * 110.97187 * 307.61840 * 5 2 1 8 8 C 1.51287 * 104.19648 * 93.31946 * 7 5 2 9 9 O 1.21269 * 124.94186 * 196.22231 * 8 7 5 10 10 N 1.34424 * 110.11359 * 16.25562 * 8 7 5 11 11 C 1.46767 * 111.29987 * 0.40711 * 10 8 7 12 12 H 1.09005 * 110.31413 * 223.94099 * 11 10 8 13 13 C 1.50703 * 110.24504 * 101.98409 * 11 10 8 14 14 H 1.07997 * 119.99583 * 243.95027 * 13 11 10 15 15 C 1.37876 * 119.99718 * 63.95057 * 13 11 10 16 16 N 1.31506 * 120.00600 * 359.97438 * 15 13 11 17 17 Si 1.86810 * 119.99608 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46939 * 60.00036 * 17 15 13 19 19 H 1.48493 * 109.46905 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46954 * 300.00209 * 17 15 13 21 21 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 24 24 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 25 25 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 26 26 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 27 27 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 28 28 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 30 30 H 1.08998 * 110.48943 * 212.00034 * 7 5 2 31 31 H 1.09004 * 110.48305 * 334.64479 * 7 5 2 32 32 H 0.96992 * 124.34838 * 180.38437 * 10 8 7 33 33 H 0.96997 * 120.00856 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0401 -0.7211 -1.2493 6 1 3.1276 -0.7930 -1.2391 7 6 1.3936 -2.1194 -1.3839 8 6 0.1889 -1.8876 -2.2692 9 8 -0.7389 -2.6582 -2.3954 10 7 0.2971 -0.7034 -2.8961 11 6 1.5443 -0.0201 -2.5335 12 1 1.3546 1.0353 -2.3379 13 6 2.5610 -0.1709 -3.6356 14 1 3.4779 -0.7118 -3.4541 15 6 2.3205 0.3819 -4.8757 16 7 1.2037 1.0402 -5.0968 17 14 3.5811 0.1956 -6.2417 18 1 3.7928 -1.2464 -6.5265 19 1 3.0874 0.8743 -7.4666 20 1 4.8648 0.8101 -5.8177 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 -1.7490 1.2492 28 1 3.1301 -0.7209 1.2493 29 1 1.6767 -0.2075 2.1392 30 1 2.0860 -2.8160 -1.8565 31 1 1.0834 -2.4918 -0.4075 32 1 -0.3641 -0.3465 -3.5095 33 1 1.0343 1.4287 -5.9693 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260518303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:09 Heat of formation + Delta-G solvation = -61.126606 kcal Electronic energy + Delta-G solvation = -15021.288896 eV Core-core repulsion = 12659.918139 eV Total energy + Delta-G solvation = -2361.370758 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.85956 -36.70032 -34.37831 -32.24921 -29.50705 -27.94444 -26.83571 -26.29626 -24.03604 -21.09593 -19.23013 -17.92107 -16.90617 -16.11816 -14.94285 -14.65171 -14.07720 -13.73631 -13.45283 -13.29105 -12.44743 -12.30927 -11.97209 -11.69135 -11.54172 -11.41005 -11.21123 -11.15153 -10.96838 -10.80443 -10.43371 -10.15810 -10.09712 -9.66294 -9.25516 -8.85569 -8.56894 -7.56683 -6.24078 -4.33928 3.21656 3.27552 3.29781 3.76321 4.27742 4.74606 5.15225 5.19924 5.25082 5.32019 5.68307 5.78111 5.90822 5.95449 6.05982 6.07817 6.19443 6.26677 6.32580 6.38393 6.48112 6.59776 6.72031 6.76120 6.84329 6.95655 7.31967 7.68952 8.06258 8.22229 8.39995 8.79065 9.36940 9.56424 10.82942 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.032310 B = 0.011905 C = 0.010267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.404292 B = 2351.422509 C = 2726.511165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.087 4.087 6 H 0.085 0.915 7 C -0.145 4.145 8 C 0.509 3.491 9 O -0.591 6.591 10 N -0.689 5.689 11 C 0.255 3.745 12 H 0.056 0.944 13 C -0.535 4.535 14 H 0.063 0.937 15 C 0.074 3.926 16 N -0.887 5.887 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.403 0.597 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 0.532 8.607 8.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 C -0.197 4.197 4 C -0.197 4.197 5 C -0.106 4.106 6 H 0.103 0.897 7 C -0.185 4.185 8 C 0.295 3.705 9 O -0.475 6.475 10 N -0.339 5.339 11 C 0.153 3.847 12 H 0.074 0.926 13 C -0.574 4.574 14 H 0.081 0.919 15 C -0.130 4.130 16 N -0.524 5.524 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.200 1.200 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.241 0.759 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.068 0.255 8.484 8.736 hybrid contribution 0.474 0.084 -1.232 1.323 sum 2.542 0.339 7.252 7.692 Atomic orbital electron populations 1.21995 0.95033 1.01683 1.01499 1.20494 0.95400 0.95554 0.94608 1.21878 1.00854 0.95441 1.01515 1.21890 1.00715 1.00146 0.96932 1.22270 1.00141 0.93531 0.94648 0.89712 1.22306 0.97424 0.98907 0.99874 1.20745 0.86772 0.81817 0.81157 1.90600 1.37913 1.50158 1.68834 1.46928 1.23622 1.19349 1.44018 1.19445 0.82102 0.93010 0.90107 0.92621 1.21423 1.03887 1.35706 0.96381 0.91928 1.25027 0.95407 0.93833 0.98745 1.69833 1.24292 1.34728 1.23555 0.86580 0.81483 0.78511 0.81013 1.20126 1.21201 1.19971 0.91750 0.92872 0.93698 0.93654 0.92778 0.91527 0.92799 0.92836 0.93293 0.89233 0.89998 0.75892 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.14 37.16 0.27 -2.11 16 2 C -0.06 -0.95 0.56 -154.51 -0.09 -1.04 16 3 C -0.14 -2.10 8.24 37.16 0.31 -1.80 16 4 C -0.14 -1.84 8.32 37.16 0.31 -1.53 16 5 C -0.09 -1.60 2.12 -88.99 -0.19 -1.79 16 6 H 0.08 1.54 7.73 -51.93 -0.40 1.13 16 7 C -0.15 -2.76 5.73 -26.74 -0.15 -2.91 16 8 C 0.51 11.69 6.67 -10.86 -0.07 11.62 16 9 O -0.59 -15.33 18.03 5.57 0.10 -15.23 16 10 N -0.69 -15.99 4.59 -53.87 -0.25 -16.24 16 11 C 0.25 5.70 2.00 -68.16 -0.14 5.56 16 12 H 0.06 1.31 5.71 -51.93 -0.30 1.01 16 13 C -0.54 -13.44 8.73 -34.44 -0.30 -13.74 16 14 H 0.06 1.55 7.57 -52.49 -0.40 1.15 16 15 C 0.07 1.92 5.42 -17.82 -0.10 1.83 16 16 N -0.89 -23.60 12.65 55.43 0.70 -22.90 16 17 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H 0.06 1.17 6.58 -51.93 -0.34 0.83 16 22 H 0.05 0.92 6.06 -51.93 -0.31 0.61 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.12 6.14 -51.93 -0.32 0.80 16 27 H 0.05 0.70 6.58 -51.93 -0.34 0.36 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.08 1.39 5.75 -51.93 -0.30 1.10 16 32 H 0.40 9.81 8.55 -40.82 -0.35 9.46 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 258.89 15.07 3.90 3.90 Total: -1.00 -28.00 258.89 -5.45 -33.45 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.73 Total: 7.66 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.15 Total: -5.92 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.45 Total: -39.14 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.10 Total: -15.23 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.00 -5.45 -33.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.679 kcal (2) G-P(sol) polarization free energy of solvation -27.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds