Wall clock time and date at job start Mon Mar 30 2020 02:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 6 6 H 1.08996 * 110.85806 * 183.78762 * 5 2 1 7 7 C 1.54634 * 110.97187 * 307.61840 * 5 2 1 8 8 C 1.51287 * 104.19648 * 93.31946 * 7 5 2 9 9 O 1.21269 * 124.94186 * 196.22231 * 8 7 5 10 10 N 1.34424 * 110.11359 * 16.25562 * 8 7 5 11 11 C 1.46767 * 111.29987 * 0.40711 * 10 8 7 12 12 H 1.09005 * 110.31413 * 223.94099 * 11 10 8 13 13 C 1.50703 * 110.24504 * 101.98409 * 11 10 8 14 14 H 1.07997 * 119.99583 * 243.95027 * 13 11 10 15 15 C 1.37876 * 119.99718 * 63.95057 * 13 11 10 16 16 N 1.31506 * 120.00600 * 359.97438 * 15 13 11 17 17 Si 1.86810 * 119.99608 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46939 * 60.00036 * 17 15 13 19 19 H 1.48493 * 109.46905 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46954 * 300.00209 * 17 15 13 21 21 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 24 24 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 25 25 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 26 26 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 27 27 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 28 28 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 30 30 H 1.08998 * 110.48943 * 212.00034 * 7 5 2 31 31 H 1.09004 * 110.48305 * 334.64479 * 7 5 2 32 32 H 0.96992 * 124.34838 * 180.38437 * 10 8 7 33 33 H 0.96997 * 120.00856 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0401 -0.7211 -1.2493 6 1 3.1276 -0.7930 -1.2391 7 6 1.3936 -2.1194 -1.3839 8 6 0.1889 -1.8876 -2.2692 9 8 -0.7389 -2.6582 -2.3954 10 7 0.2971 -0.7034 -2.8961 11 6 1.5443 -0.0201 -2.5335 12 1 1.3546 1.0353 -2.3379 13 6 2.5610 -0.1709 -3.6356 14 1 3.4779 -0.7118 -3.4541 15 6 2.3205 0.3819 -4.8757 16 7 1.2037 1.0402 -5.0968 17 14 3.5811 0.1956 -6.2417 18 1 3.7928 -1.2464 -6.5265 19 1 3.0874 0.8743 -7.4666 20 1 4.8648 0.8101 -5.8177 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 -1.7490 1.2492 28 1 3.1301 -0.7209 1.2493 29 1 1.6767 -0.2075 2.1392 30 1 2.0860 -2.8160 -1.8565 31 1 1.0834 -2.4918 -0.4075 32 1 -0.3641 -0.3465 -3.5095 33 1 1.0343 1.4287 -5.9693 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260518303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:08 Heat of formation + Delta-G solvation = -78.906560 kcal Electronic energy + Delta-G solvation = -15022.059893 eV Core-core repulsion = 12659.918139 eV Total energy + Delta-G solvation = -2362.141754 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.51284 -38.37222 -36.05907 -34.16703 -31.10308 -29.62858 -28.01938 -27.70021 -25.76128 -22.71208 -21.00156 -19.39006 -18.71644 -17.88163 -16.65984 -16.45931 -15.69191 -15.16104 -14.94532 -14.80979 -14.28116 -13.91669 -13.31298 -13.27140 -12.97555 -12.84845 -12.74977 -12.54280 -12.46843 -12.38466 -12.03033 -11.86586 -11.41732 -11.13537 -10.85178 -10.74281 -10.45591 -9.46153 -8.19965 -6.35419 1.41463 1.43796 1.49689 1.93835 2.39497 2.87027 3.33388 3.79567 3.88677 3.93363 4.18271 4.41708 4.53231 4.63349 4.81882 4.87588 4.96997 5.00455 5.04407 5.12667 5.19052 5.26290 5.32810 5.44791 5.46496 5.62524 5.68798 5.77104 6.17652 6.34704 6.52231 6.88969 7.38488 7.67664 8.85212 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.032310 B = 0.011905 C = 0.010267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.404292 B = 2351.422509 C = 2726.511165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.077 4.077 6 H 0.094 0.906 7 C -0.136 4.136 8 C 0.501 3.499 9 O -0.626 6.626 10 N -0.692 5.692 11 C 0.252 3.748 12 H 0.041 0.959 13 C -0.547 4.547 14 H 0.066 0.934 15 C 0.027 3.973 16 N -0.913 5.913 17 Si 0.952 3.048 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.264 1.264 21 H 0.036 0.964 22 H 0.041 0.959 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.392 0.608 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 0.269 10.161 10.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.058 4.058 3 C -0.194 4.194 4 C -0.192 4.192 5 C -0.095 4.095 6 H 0.112 0.888 7 C -0.175 4.175 8 C 0.289 3.711 9 O -0.513 6.513 10 N -0.339 5.339 11 C 0.151 3.849 12 H 0.059 0.941 13 C -0.586 4.586 14 H 0.084 0.916 15 C -0.174 4.174 16 N -0.552 5.552 17 Si 0.778 3.222 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.188 1.188 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.228 0.772 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.529 -0.001 10.055 10.656 hybrid contribution -0.011 0.197 -1.724 1.736 sum 3.518 0.197 8.330 9.045 Atomic orbital electron populations 1.21955 0.95782 1.00829 1.01296 1.20503 0.94701 0.96002 0.94603 1.21842 1.01333 0.94910 1.01298 1.21844 1.01502 1.00035 0.95790 1.22246 1.00521 0.92754 0.94025 0.88796 1.22319 0.95496 0.99524 1.00204 1.21405 0.87413 0.81091 0.81231 1.90570 1.39576 1.51061 1.70051 1.47010 1.23576 1.19712 1.43646 1.19452 0.81238 0.92759 0.91468 0.94134 1.21824 1.04526 1.35082 0.97174 0.91610 1.25736 0.96920 0.93875 1.00895 1.69940 1.25693 1.35736 1.23784 0.85704 0.79906 0.78066 0.78512 1.20398 1.21499 1.18817 0.94513 0.93969 0.91364 0.91397 0.91958 0.94207 0.92486 0.91612 0.91477 0.88491 0.87409 0.77244 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 7.14 71.98 0.51 -3.92 16 2 C -0.06 -1.68 0.56 -52.18 -0.03 -1.71 16 3 C -0.14 -3.82 8.24 71.98 0.59 -3.22 16 4 C -0.13 -2.99 8.32 71.98 0.60 -2.39 16 5 C -0.08 -2.68 2.12 -9.73 -0.02 -2.70 16 6 H 0.09 3.15 7.73 -2.39 -0.02 3.13 16 7 C -0.14 -4.92 5.73 30.59 0.18 -4.74 16 8 C 0.50 22.95 6.67 87.90 0.59 23.54 16 9 O -0.63 -32.70 18.03 -3.00 -0.05 -32.75 16 10 N -0.69 -32.62 4.59 -442.95 -2.04 -34.66 16 11 C 0.25 11.27 2.00 44.70 0.09 11.36 16 12 H 0.04 1.95 5.71 -2.38 -0.01 1.94 16 13 C -0.55 -27.28 8.73 25.60 0.22 -27.06 16 14 H 0.07 3.17 7.57 -2.91 -0.02 3.15 16 15 C 0.03 1.41 5.42 84.66 0.46 1.87 16 16 N -0.91 -49.39 12.65 21.45 0.27 -49.12 16 17 Si 0.95 41.47 29.54 68.60 2.03 43.49 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 21 H 0.04 1.33 6.58 -2.39 -0.02 1.32 16 22 H 0.04 1.40 6.06 -2.39 -0.01 1.38 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.32 6.14 -2.39 -0.01 1.30 16 27 H 0.06 1.24 6.58 -2.39 -0.02 1.23 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.11 3.36 5.75 -2.39 -0.01 3.35 16 32 H 0.39 19.77 8.55 -92.71 -0.79 18.98 16 33 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -59.62 258.89 3.71 -55.91 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.31 Total: 26.12 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 3.19 Total: -8.98 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -1.76 Total: -83.78 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.05 Total: -32.75 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -59.62 3.71 -55.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.999 kcal (2) G-P(sol) polarization free energy of solvation -59.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds