Wall clock time and date at job start Mon Mar 30 2020 02:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47362 * 2 1 4 4 C 1.53006 * 109.46731 * 240.00115 * 2 1 3 5 5 H 1.08998 * 109.46887 * 304.97074 * 4 2 1 6 6 C 1.50699 * 109.47150 * 64.96947 * 4 2 1 7 7 H 1.08006 * 119.99735 * 86.32096 * 6 4 2 8 8 C 1.37869 * 120.00311 * 266.31971 * 6 4 2 9 9 N 1.31522 * 119.99942 * 358.57464 * 8 6 4 10 10 Si 1.86801 * 120.00422 * 178.57090 * 8 6 4 11 11 H 1.48505 * 109.47033 * 60.00135 * 10 8 6 12 12 H 1.48501 * 109.47160 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47232 * 300.00213 * 10 8 6 14 14 C 1.53006 * 109.46968 * 184.97028 * 4 2 1 15 15 H 1.09001 * 110.21695 * 298.37959 * 14 4 2 16 16 C 1.54475 * 110.24396 * 176.45209 * 14 4 2 17 17 C 1.54634 * 101.76301 * 215.58272 * 16 14 4 18 18 C 1.51283 * 104.19522 * 24.79852 * 17 16 14 19 19 O 1.21276 * 124.93991 * 163.77374 * 18 17 16 20 20 N 1.34565 * 110.13617 * 343.67390 * 18 17 16 21 21 H 1.09001 * 109.47327 * 60.57011 * 1 2 3 22 22 H 1.08995 * 109.47062 * 180.57462 * 1 2 3 23 23 H 1.09004 * 109.46722 * 300.57729 * 1 2 3 24 24 H 1.08993 * 109.47460 * 120.00100 * 2 1 3 25 25 H 1.09001 * 109.46764 * 301.24456 * 3 2 1 26 26 H 1.08995 * 109.47273 * 61.24266 * 3 2 1 27 27 H 1.09001 * 109.47049 * 181.24344 * 3 2 1 28 28 H 0.96997 * 120.00349 * 180.02562 * 9 8 6 29 29 H 1.09003 * 110.97131 * 333.69981 * 16 14 4 30 30 H 1.09003 * 110.96976 * 97.43299 * 16 14 4 31 31 H 1.09001 * 110.48285 * 143.47365 * 17 16 14 32 32 H 1.08997 * 110.48843 * 266.11998 * 17 16 14 33 33 H 0.97008 * 124.42824 * 179.64397 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.6056 -1.7200 -1.2949 6 6 1.6406 0.0567 -2.4767 7 1 2.2681 0.8594 -2.8351 8 6 0.4743 -0.2562 -3.1420 9 7 -0.2756 -1.2518 -2.7220 10 14 -0.0411 0.7338 -4.6399 11 1 1.0076 0.6305 -5.6863 12 1 -1.3226 0.2012 -5.1683 13 1 -0.2182 2.1572 -4.2554 14 6 3.5649 -0.8304 -1.1885 15 1 4.0132 0.1629 -1.1713 16 6 4.0919 -1.6340 -2.3979 17 6 5.2805 -2.4008 -1.7731 18 6 4.9388 -2.4796 -0.3015 19 8 5.4611 -3.2318 0.4936 20 7 3.9725 -1.5921 -0.0021 21 1 -0.3634 0.5050 -0.8951 22 1 -0.3633 -1.0276 0.0103 23 1 -0.3633 0.5228 0.8848 24 1 1.8934 -0.5138 0.8899 25 1 1.6586 1.9627 -0.8786 26 1 1.6951 1.9499 0.9009 27 1 3.1298 1.4425 -0.0223 28 1 -1.0959 -1.4722 -3.1903 29 1 3.3337 -2.3242 -2.7680 30 1 4.4307 -0.9677 -3.1913 31 1 5.3568 -3.4004 -2.2010 32 1 6.2095 -1.8499 -1.9200 33 1 3.5934 -1.4717 0.8826 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260558542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:38 Heat of formation + Delta-G solvation = -60.900592 kcal Electronic energy + Delta-G solvation = -14777.903466 eV Core-core repulsion = 12416.542509 eV Total energy + Delta-G solvation = -2361.360957 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.74243 -36.86166 -34.67170 -32.05408 -30.62770 -28.72492 -26.06071 -25.17552 -23.08463 -20.61604 -20.05307 -18.51592 -16.66961 -16.40772 -15.38297 -14.63761 -14.12878 -13.91366 -13.14681 -13.07585 -12.84880 -12.39768 -12.01084 -11.86841 -11.39000 -11.26839 -10.99590 -10.82691 -10.68995 -10.43593 -10.11637 -9.97892 -9.50031 -9.32881 -9.26947 -8.87777 -8.45677 -8.23558 -6.09851 -4.12803 3.12206 3.24966 3.31434 3.33531 4.05139 4.36942 4.99145 5.22959 5.27800 5.48507 5.76544 5.99620 6.08383 6.12699 6.19009 6.27972 6.51698 6.61567 6.67139 6.75570 6.86982 7.05118 7.11373 7.29072 7.41592 7.44341 7.67544 7.69187 7.75417 7.86293 8.29811 8.82501 8.94530 9.50030 10.98381 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.011071 C = 0.009471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.556297 B = 2528.624011 C = 2955.709098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.083 4.083 3 C -0.134 4.134 4 C 0.038 3.962 5 H 0.064 0.936 6 C -0.504 4.504 7 H 0.055 0.945 8 C 0.070 3.930 9 N -0.884 5.884 10 Si 0.884 3.116 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.131 3.869 15 H 0.067 0.933 16 C -0.108 4.108 17 C -0.161 4.161 18 C 0.514 3.486 19 O -0.565 6.565 20 N -0.720 5.720 21 H 0.069 0.931 22 H 0.047 0.953 23 H 0.012 0.988 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.026 0.974 27 H 0.037 0.963 28 H 0.261 0.739 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 2.319 0.653 5.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.102 4.102 3 C -0.191 4.191 4 C 0.018 3.982 5 H 0.082 0.918 6 C -0.543 4.543 7 H 0.073 0.927 8 C -0.132 4.132 9 N -0.521 5.521 10 Si 0.712 3.288 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.203 1.203 14 C 0.027 3.973 15 H 0.085 0.915 16 C -0.146 4.146 17 C -0.201 4.201 18 C 0.301 3.699 19 O -0.445 6.445 20 N -0.373 5.373 21 H 0.088 0.912 22 H 0.067 0.933 23 H 0.031 0.969 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.660 1.828 0.891 5.085 hybrid contribution -0.632 0.690 -0.487 1.055 sum 4.028 2.519 0.404 4.768 Atomic orbital electron populations 1.21548 0.95342 1.01083 0.99414 1.21197 0.96291 0.95176 0.97547 1.21775 0.99209 0.97784 1.00341 1.19237 0.86992 0.98793 0.93151 0.91828 1.20780 1.06539 1.16891 1.10062 0.92695 1.24880 0.96708 0.94837 0.96794 1.69942 1.14112 1.27831 1.40242 0.86791 0.77940 0.80573 0.83492 1.20259 1.21456 1.20332 1.22167 0.99715 0.93169 0.82215 0.91513 1.22481 0.95749 0.99041 0.97369 1.22399 1.00794 1.03142 0.93762 1.21018 0.78930 0.79122 0.90867 1.90666 1.56445 1.41526 1.55863 1.46683 1.38954 1.38806 1.12901 0.91225 0.93345 0.96900 0.95611 0.91592 0.95536 0.94423 0.92887 0.89574 0.90017 0.89010 0.88861 0.75856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 8.11 37.16 0.30 -2.18 16 2 C -0.08 -1.66 2.61 -90.62 -0.24 -1.89 16 3 C -0.13 -2.44 8.64 37.16 0.32 -2.12 16 4 C 0.04 0.80 1.37 -91.77 -0.13 0.67 16 5 H 0.06 1.58 7.30 -51.93 -0.38 1.20 16 6 C -0.50 -11.74 5.75 -34.44 -0.20 -11.93 16 7 H 0.05 1.27 7.80 -52.48 -0.41 0.86 16 8 C 0.07 1.73 4.32 -17.82 -0.08 1.65 16 9 N -0.88 -22.89 11.62 55.43 0.64 -22.25 16 10 Si 0.88 19.54 29.54 -169.99 -5.02 14.52 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 C 0.13 2.39 2.72 -67.01 -0.18 2.21 16 15 H 0.07 1.19 6.66 -51.93 -0.35 0.85 16 16 C -0.11 -1.83 6.12 -25.10 -0.15 -1.98 16 17 C -0.16 -2.47 6.86 -26.74 -0.18 -2.65 16 18 C 0.51 9.56 8.43 -10.79 -0.09 9.47 16 19 O -0.56 -12.28 18.03 5.56 0.10 -12.18 16 20 N -0.72 -12.81 5.74 -52.73 -0.30 -13.11 16 21 H 0.07 1.63 6.21 -51.93 -0.32 1.31 16 22 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.03 0.48 6.60 -51.93 -0.34 0.14 16 25 H 0.07 1.30 7.11 -51.93 -0.37 0.93 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.64 6.55 -51.93 -0.34 0.30 16 28 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.09 1.61 7.90 -51.93 -0.41 1.20 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.40 6.89 7.48 -40.82 -0.31 6.58 16 LS Contribution 261.94 15.07 3.95 3.95 Total: -1.00 -26.51 261.94 -6.15 -32.66 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.90 Total: 5.17 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.63 Total: -8.76 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.34 Total: -35.36 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.10 Total: -12.18 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.51 -6.15 -32.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260558542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.240 kcal (2) G-P(sol) polarization free energy of solvation -26.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds