Wall clock time and date at job start Mon Mar 30 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52997 * 109.47233 * 2 1 4 4 H 1.09005 * 109.46925 * 305.27246 * 3 2 1 5 5 C 1.50700 * 109.47651 * 65.27123 * 3 2 1 6 6 H 1.07999 * 119.99418 * 63.74960 * 5 3 2 7 7 C 1.37871 * 120.00170 * 243.74797 * 5 3 2 8 8 N 1.31513 * 120.00176 * 171.10940 * 7 5 3 9 9 Si 1.86800 * 120.00147 * 351.11518 * 7 5 3 10 10 H 1.48505 * 109.47204 * 89.15967 * 9 7 5 11 11 H 1.48496 * 109.47162 * 209.16104 * 9 7 5 12 12 H 1.48502 * 109.46890 * 329.16285 * 9 7 5 13 13 C 1.53005 * 109.47179 * 185.27711 * 3 2 1 14 14 H 1.08999 * 109.39602 * 299.82285 * 13 3 2 15 15 C 1.53066 * 109.40375 * 59.56787 * 13 3 2 16 16 C 1.53362 * 108.41412 * 169.04397 * 15 13 3 17 17 C 1.52920 * 108.65767 * 292.44374 * 16 15 13 18 18 N 1.45757 * 110.49158 * 50.76530 * 17 16 15 19 19 C 1.33349 * 124.10067 * 340.94435 * 18 17 16 20 20 O 1.21281 * 118.24174 * 182.20301 * 19 18 17 21 21 H 1.09002 * 109.47284 * 54.53073 * 1 2 3 22 22 H 1.09003 * 109.47365 * 174.52785 * 1 2 3 23 23 H 1.09002 * 109.47827 * 294.53308 * 1 2 3 24 24 H 1.09008 * 109.46848 * 119.99467 * 2 1 3 25 25 H 1.08997 * 109.47702 * 239.99564 * 2 1 3 26 26 H 0.96996 * 120.00437 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.66938 * 288.76371 * 15 13 3 28 28 H 1.08993 * 109.67568 * 49.29741 * 15 13 3 29 29 H 1.08997 * 109.60151 * 172.69901 * 16 15 13 30 30 H 1.08996 * 109.75207 * 52.27631 * 16 15 13 31 31 H 1.09008 * 109.30259 * 290.44778 * 17 16 15 32 32 H 1.09007 * 109.30193 * 171.07453 * 17 16 15 33 33 H 0.96997 * 117.94761 * 160.92353 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6015 1.9828 -0.8390 5 6 1.6471 2.1143 1.2905 6 1 2.0403 1.7525 2.2290 7 6 0.7858 3.1907 1.2729 8 7 0.3051 3.6668 2.4007 9 14 0.3014 3.9730 -0.3528 10 1 -0.9050 3.2932 -0.8892 11 1 0.0052 5.4126 -0.1406 12 1 1.4190 3.8350 -1.3209 13 6 3.5642 1.4445 -0.1327 14 1 4.0015 0.9065 0.7084 15 6 3.9619 0.7524 -1.4387 16 6 5.4541 1.0055 -1.6863 17 6 5.6561 2.4928 -1.9789 18 7 5.0151 3.3063 -0.9533 19 6 4.0631 2.8610 -0.1326 20 8 3.5737 3.6418 0.6559 21 1 -0.3634 0.5963 -0.8370 22 1 -0.3634 -1.0230 -0.0980 23 1 -0.3635 0.4267 0.9349 24 1 1.8932 -0.5138 0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 -0.3011 4.4238 2.3884 27 1 3.7803 -0.3192 -1.3562 28 1 3.3783 1.1616 -2.2633 29 1 5.7882 0.4161 -2.5401 30 1 6.0268 0.7258 -0.8021 31 1 5.2230 2.7309 -2.9505 32 1 6.7232 2.7143 -1.9996 33 1 5.2989 4.2293 -0.8619 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260634021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:20 Heat of formation + Delta-G solvation = -75.753519 kcal Electronic energy + Delta-G solvation = -15023.170070 eV Core-core repulsion = 12661.165042 eV Total energy + Delta-G solvation = -2362.005028 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.18709 -37.39249 -36.92923 -33.98000 -32.92556 -30.74941 -28.53687 -25.43165 -24.62345 -22.93617 -21.11652 -19.97758 -18.90316 -17.92398 -16.89088 -16.28762 -15.96491 -15.26751 -14.91931 -14.75918 -14.65580 -14.57133 -13.94434 -13.56921 -13.12702 -12.81149 -12.67414 -12.45625 -12.02559 -11.96699 -11.69683 -11.57886 -11.49872 -11.10692 -10.83846 -10.49299 -10.13530 -9.79088 -8.13359 -6.00784 1.23741 1.31953 1.36198 2.02996 2.43853 2.61308 3.30795 3.94430 4.00764 4.04400 4.15739 4.38203 4.54318 4.64351 4.68358 4.75786 4.84697 4.91750 5.06346 5.09329 5.21306 5.25440 5.28054 5.46487 5.48675 5.65343 5.67759 5.88569 6.15569 6.41190 6.65393 6.91421 7.57455 7.66440 9.07371 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.030122 B = 0.014662 C = 0.011788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.318421 B = 1909.251583 C = 2374.810512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C 0.017 3.983 4 H 0.026 0.974 5 C -0.449 4.449 6 H 0.021 0.979 7 C 0.029 3.971 8 N -0.963 5.963 9 Si 0.929 3.071 10 H -0.266 1.266 11 H -0.307 1.307 12 H -0.263 1.263 13 C -0.091 4.091 14 H 0.084 0.916 15 C -0.118 4.118 16 C -0.130 4.130 17 C 0.105 3.895 18 N -0.732 5.732 19 C 0.499 3.501 20 O -0.564 6.564 21 H 0.036 0.964 22 H 0.069 0.931 23 H 0.029 0.971 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.254 0.746 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.823 -7.824 -14.017 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 C -0.002 4.002 4 H 0.044 0.956 5 C -0.487 4.487 6 H 0.039 0.961 7 C -0.165 4.165 8 N -0.607 5.607 9 Si 0.758 3.242 10 H -0.191 1.191 11 H -0.235 1.235 12 H -0.188 1.188 13 C -0.113 4.113 14 H 0.102 0.898 15 C -0.155 4.155 16 C -0.168 4.168 17 C -0.018 4.018 18 N -0.386 5.386 19 C 0.286 3.714 20 O -0.442 6.442 21 H 0.055 0.945 22 H 0.088 0.912 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 10.387 -7.547 -13.574 18.684 hybrid contribution -0.393 1.530 0.136 1.585 sum 9.994 -6.018 -13.438 17.795 Atomic orbital electron populations 1.21635 0.96999 1.00652 1.00409 1.21546 0.95427 0.96094 1.00955 1.19304 0.90705 0.95170 0.95013 0.95555 1.20807 1.23535 1.12216 0.92185 0.96099 1.25495 0.96216 0.97026 0.97783 1.70049 1.35111 1.27140 1.28367 0.86033 0.78320 0.77257 0.82615 1.19138 1.23520 1.18834 1.21296 0.98724 0.91172 1.00117 0.89839 1.21841 0.96863 1.01825 0.95014 1.21901 0.95655 0.95154 1.04051 1.21626 0.98574 0.91483 0.90081 1.45728 1.39876 1.15929 1.37036 1.20770 0.78797 0.91926 0.79895 1.90848 1.55866 1.57227 1.40223 0.94484 0.91224 0.95149 0.93255 0.90265 0.93758 0.88697 0.91878 0.86688 0.91236 0.91221 0.88250 0.77348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 9.64 71.98 0.69 -4.71 16 2 C -0.10 -3.85 5.18 30.59 0.16 -3.69 16 3 C 0.02 0.80 1.30 -11.54 -0.02 0.78 16 4 H 0.03 1.26 4.66 -2.38 -0.01 1.25 16 5 C -0.45 -26.69 5.83 25.60 0.15 -26.54 16 6 H 0.02 1.40 8.06 -2.91 -0.02 1.37 16 7 C 0.03 1.84 4.92 84.65 0.42 2.26 16 8 N -0.96 -65.79 13.96 21.44 0.30 -65.49 16 9 Si 0.93 50.16 26.34 68.60 1.81 51.96 16 10 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 11 H -0.31 -17.03 7.11 99.48 0.71 -16.32 16 12 H -0.26 -13.56 6.60 99.48 0.66 -12.90 16 13 C -0.09 -3.51 2.05 -11.68 -0.02 -3.54 16 14 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 15 C -0.12 -3.01 4.61 30.74 0.14 -2.87 16 16 C -0.13 -2.37 6.02 30.69 0.18 -2.19 16 17 C 0.11 2.05 7.17 86.49 0.62 2.67 16 18 N -0.73 -22.79 5.45 -467.30 -2.55 -25.34 16 19 C 0.50 21.33 7.29 87.71 0.64 21.97 16 20 O -0.56 -31.41 13.96 -3.03 -0.04 -31.45 16 21 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.03 1.38 7.57 -2.39 -0.02 1.37 16 24 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.08 2.30 6.41 -2.39 -0.02 2.28 16 26 H 0.25 16.54 8.31 -92.71 -0.77 15.77 16 27 H 0.09 2.01 6.95 -2.39 -0.02 1.99 16 28 H 0.06 1.64 8.09 -2.39 -0.02 1.62 16 29 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 31 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.39 11.57 8.80 -92.71 -0.82 10.75 16 Total: -1.00 -80.60 258.52 2.71 -77.89 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.22 Total: 8.27 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 2.96 Total: -15.85 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -2.25 Total: -90.83 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.04 Total: -31.45 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 1.81 Total: 51.96 kcal Total: -80.60 2.71 -77.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260634021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.140 kcal (2) G-P(sol) polarization free energy of solvation -80.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds