Wall clock time and date at job start Mon Mar 30 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52990 * 109.47438 * 2 1 4 4 H 1.09004 * 109.47864 * 185.66429 * 3 2 1 5 5 C 1.50707 * 109.47156 * 65.65830 * 3 2 1 6 6 H 1.07991 * 120.00126 * 275.37916 * 5 3 2 7 7 C 1.37878 * 119.99395 * 95.38152 * 5 3 2 8 8 N 1.31515 * 119.99889 * 208.12834 * 7 5 3 9 9 Si 1.86805 * 120.00521 * 28.12388 * 7 5 3 10 10 H 1.48498 * 109.46955 * 88.16335 * 9 7 5 11 11 H 1.48497 * 109.46694 * 328.16417 * 9 7 5 12 12 H 1.48491 * 109.47147 * 208.16449 * 9 7 5 13 13 C 1.53000 * 109.47363 * 305.66298 * 3 2 1 14 14 H 1.09004 * 109.40098 * 53.12083 * 13 3 2 15 15 C 1.53065 * 109.40478 * 172.94830 * 13 3 2 16 16 C 1.53350 * 108.42446 * 169.02949 * 15 13 3 17 17 C 1.52915 * 108.67393 * 292.47023 * 16 15 13 18 18 N 1.45744 * 110.49135 * 50.75359 * 17 16 15 19 19 C 1.33244 * 124.06771 * 340.84372 * 18 17 16 20 20 O 1.21284 * 118.15676 * 182.28755 * 19 18 17 21 21 H 1.09001 * 109.47079 * 305.39749 * 1 2 3 22 22 H 1.09000 * 109.47406 * 65.39639 * 1 2 3 23 23 H 1.09006 * 109.47216 * 185.40181 * 1 2 3 24 24 H 1.09008 * 109.46849 * 239.99966 * 2 1 3 25 25 H 1.09003 * 109.47498 * 120.00685 * 2 1 3 26 26 H 0.96996 * 120.00494 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.67533 * 288.76382 * 15 13 3 28 28 H 1.08993 * 109.67729 * 49.26044 * 15 13 3 29 29 H 1.08994 * 109.60325 * 52.22666 * 16 15 13 30 30 H 1.09004 * 109.60197 * 172.55101 * 16 15 13 31 31 H 1.09005 * 109.30078 * 171.06927 * 17 16 15 32 32 H 1.09005 * 109.30072 * 290.43826 * 17 16 15 33 33 H 0.96997 * 117.95330 * 160.92689 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1253 1.4441 -0.1014 5 6 1.6553 2.1112 1.2946 6 1 0.6788 2.5598 1.4012 7 6 2.5503 2.1505 2.3426 8 7 2.1107 2.2014 3.5811 9 14 4.3872 2.1311 2.0037 10 1 4.8702 3.5224 1.8137 11 1 4.6554 1.3419 0.7747 12 1 5.0962 1.5136 3.1531 13 6 1.4171 2.2036 -1.1720 14 1 0.3328 2.0981 -1.1369 15 6 1.7873 3.6854 -1.0701 16 6 1.3937 4.3745 -2.3823 17 6 2.2906 3.8447 -3.5017 18 7 2.2970 2.3873 -3.5037 19 6 1.9319 1.6378 -2.4643 20 8 2.0189 0.4326 -2.5690 21 1 -0.3633 0.5953 0.8377 22 1 -0.3634 0.4278 -0.9343 23 1 -0.3634 -1.0232 0.0967 24 1 1.8932 -0.5139 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 2.7403 2.2286 4.3185 27 1 1.2485 4.1420 -0.2398 28 1 2.8607 3.7853 -0.9101 29 1 0.3517 4.1537 -2.6131 30 1 1.5260 5.4520 -2.2834 31 1 1.9197 4.2047 -4.4614 32 1 3.3070 4.2092 -3.3521 33 1 2.5860 1.9350 -4.3117 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260634044.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:25 Heat of formation + Delta-G solvation = -74.291350 kcal Electronic energy + Delta-G solvation = -14956.713018 eV Core-core repulsion = 12594.771395 eV Total energy + Delta-G solvation = -2361.941624 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.42220 -37.40881 -37.12624 -34.12199 -32.90999 -30.60618 -28.55094 -25.88944 -24.29094 -23.40742 -21.18379 -19.76115 -18.88426 -18.09519 -16.80751 -16.44095 -15.84676 -15.60525 -15.11232 -14.97342 -14.60452 -14.23911 -14.01442 -13.84945 -12.95604 -12.85780 -12.74920 -12.38274 -12.22005 -12.04308 -11.84038 -11.69244 -11.32826 -11.08024 -10.85069 -10.44415 -9.99631 -9.89909 -8.30222 -6.13726 1.32315 1.37524 1.45015 1.78190 2.39909 2.50780 3.02283 3.89027 3.97579 4.02811 4.16098 4.39298 4.57943 4.62042 4.69708 4.75042 4.84780 4.99289 5.03619 5.19141 5.23610 5.34895 5.43545 5.51614 5.52216 5.62787 5.74370 5.86828 6.06882 6.40209 6.46336 6.84469 7.41838 7.43158 8.85995 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.029397 B = 0.013079 C = 0.011299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.264687 B = 2140.257979 C = 2477.391216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.123 4.123 3 C 0.030 3.970 4 H 0.022 0.978 5 C -0.500 4.500 6 H 0.046 0.954 7 C 0.032 3.968 8 N -0.924 5.924 9 Si 0.906 3.094 10 H -0.262 1.262 11 H -0.260 1.260 12 H -0.292 1.292 13 C -0.090 4.090 14 H 0.094 0.906 15 C -0.105 4.105 16 C -0.133 4.133 17 C 0.108 3.892 18 N -0.716 5.716 19 C 0.515 3.485 20 O -0.590 6.590 21 H 0.041 0.959 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.020 0.980 26 H 0.263 0.737 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 5.691 -14.485 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.010 3.990 4 H 0.040 0.960 5 C -0.537 4.537 6 H 0.064 0.936 7 C -0.168 4.168 8 N -0.562 5.562 9 Si 0.732 3.268 10 H -0.187 1.187 11 H -0.185 1.185 12 H -0.219 1.219 13 C -0.111 4.111 14 H 0.112 0.888 15 C -0.143 4.143 16 C -0.171 4.171 17 C -0.016 4.016 18 N -0.367 5.367 19 C 0.304 3.696 20 O -0.471 6.471 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.529 5.242 -14.147 15.097 hybrid contribution 0.951 -0.306 0.350 1.059 sum 1.480 4.936 -13.797 14.728 Atomic orbital electron populations 1.21501 0.96033 1.00029 1.00338 1.21832 0.96733 0.98465 0.99032 1.19084 0.95257 0.92459 0.92160 0.96026 1.20815 1.00464 1.36353 0.96075 0.93612 1.25593 1.02105 0.94654 0.94402 1.70231 1.36282 1.50293 0.99402 0.86304 0.83246 0.79281 0.78018 1.18651 1.18454 1.21862 1.21301 1.01558 0.97141 0.91087 0.88820 1.21534 1.01083 0.93108 0.98542 1.21954 1.00062 1.01880 0.93193 1.21631 1.00967 0.77928 1.01026 1.45494 1.66995 1.08718 1.15494 1.20643 0.76297 0.86558 0.86137 1.90584 1.56814 1.16699 1.83034 0.93980 0.93271 0.93604 0.91651 0.96094 0.92749 0.91338 0.93074 0.90876 0.87565 0.87265 0.90924 0.76286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 9.13 71.98 0.66 -4.55 16 2 C -0.12 -5.86 5.24 30.59 0.16 -5.70 16 3 C 0.03 1.43 1.61 -11.54 -0.02 1.41 16 4 H 0.02 1.09 4.84 -2.38 -0.01 1.08 16 5 C -0.50 -27.15 6.32 25.60 0.16 -26.99 16 6 H 0.05 2.68 7.90 -2.92 -0.02 2.66 16 7 C 0.03 1.81 5.45 84.65 0.46 2.27 16 8 N -0.92 -56.14 13.96 21.45 0.30 -55.84 16 9 Si 0.91 43.93 27.89 68.60 1.91 45.85 16 10 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.26 -12.46 5.94 99.48 0.59 -11.87 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 13 C -0.09 -3.51 1.77 -11.68 -0.02 -3.53 16 14 H 0.09 3.67 6.06 -2.38 -0.01 3.66 16 15 C -0.10 -3.49 4.70 30.73 0.14 -3.35 16 16 C -0.13 -2.88 6.02 30.68 0.18 -2.69 16 17 C 0.11 1.97 7.17 86.49 0.62 2.59 16 18 N -0.72 -18.61 5.44 -467.48 -2.54 -21.15 16 19 C 0.52 18.81 7.28 87.73 0.64 19.45 16 20 O -0.59 -25.55 14.39 -3.04 -0.04 -25.60 16 21 H 0.04 1.93 7.15 -2.39 -0.02 1.92 16 22 H 0.05 1.94 6.52 -2.39 -0.02 1.92 16 23 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.07 3.13 5.50 -2.38 -0.01 3.12 16 25 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.07 2.51 7.49 -2.39 -0.02 2.49 16 28 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 29 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 30 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.40 8.93 8.80 -92.71 -0.82 8.11 16 Total: -1.00 -67.72 255.99 2.78 -64.94 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.17 Total: 12.90 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 2.99 Total: -21.09 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -2.25 Total: -76.99 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.04 Total: -25.60 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.91 Total: 45.85 kcal Total: -67.72 2.78 -64.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260634044.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.354 kcal (2) G-P(sol) polarization free energy of solvation -67.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds