Wall clock time and date at job start Mon Mar 30 2020 02:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 C 1.52995 * 109.47765 * 120.00516 * 2 1 3 5 5 H 1.08996 * 109.47368 * 185.32807 * 4 2 1 6 6 C 1.50702 * 109.47108 * 305.32770 * 4 2 1 7 7 H 1.07998 * 120.00160 * 84.70522 * 6 4 2 8 8 C 1.37881 * 119.99918 * 264.71230 * 6 4 2 9 9 N 1.31511 * 119.99927 * 350.29164 * 8 6 4 10 10 Si 1.86795 * 119.99871 * 170.29398 * 8 6 4 11 11 H 1.48497 * 109.47381 * 59.99855 * 10 8 6 12 12 H 1.48496 * 109.47003 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47136 * 299.99841 * 10 8 6 14 14 C 1.53003 * 109.47021 * 65.32668 * 4 2 1 15 15 H 1.08996 * 110.43192 * 301.22184 * 14 4 2 16 16 C 1.54623 * 110.48522 * 63.76846 * 14 4 2 17 17 C 1.54479 * 101.76533 * 93.88315 * 16 14 4 18 18 N 1.46762 * 105.47411 * 25.41205 * 17 16 14 19 19 C 1.34743 * 111.35322 * 343.01935 * 18 17 16 20 20 O 1.21278 * 125.12275 * 180.38607 * 19 18 17 21 21 H 1.09003 * 109.46828 * 181.70449 * 1 2 3 22 22 H 1.09009 * 109.46592 * 301.69784 * 1 2 3 23 23 H 1.08991 * 109.47458 * 61.70072 * 1 2 3 24 24 H 1.09007 * 109.47114 * 240.00958 * 2 1 3 25 25 H 1.09004 * 109.47338 * 173.54856 * 3 2 1 26 26 H 1.08999 * 109.47635 * 293.55169 * 3 2 1 27 27 H 1.09000 * 109.47077 * 53.55093 * 3 2 1 28 28 H 0.97005 * 120.00100 * 358.49375 * 9 8 6 29 29 H 1.09002 * 110.96918 * 211.99524 * 16 14 4 30 30 H 1.08992 * 110.97442 * 335.72198 * 16 14 4 31 31 H 1.09001 * 110.24686 * 144.41508 * 17 16 14 32 32 H 1.09001 * 110.24242 * 266.32281 * 17 16 14 33 33 H 0.96998 * 124.34594 * 162.98177 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1259 -0.6394 1.2980 6 6 1.4330 -0.0913 2.4761 7 1 0.4563 -0.4027 2.8160 8 6 2.1244 0.8828 3.1648 9 7 3.3826 1.1281 2.8710 10 14 1.2740 1.8539 4.5150 11 1 0.8107 0.9245 5.5764 12 1 2.2272 2.8335 5.0955 13 1 0.1079 2.5762 3.9459 14 6 1.6424 -2.1973 1.1838 15 1 0.5594 -2.2968 1.1127 16 6 2.3296 -2.8904 -0.0155 17 6 3.5986 -3.4751 0.6435 18 7 3.2583 -3.6517 2.0601 19 6 2.1639 -2.9401 2.3942 20 8 1.6691 -2.8994 3.5007 21 1 -0.3633 -1.0273 0.0306 22 1 -0.3633 0.5400 0.8745 23 1 -0.3634 0.4871 -0.9047 24 1 1.8933 -0.5137 -0.8901 25 1 3.1239 1.4447 0.1155 26 1 1.7740 1.9220 -0.9420 27 1 1.5855 1.9885 0.8266 28 1 3.8307 0.6089 2.1849 29 1 1.7004 -3.6826 -0.4211 30 1 2.5888 -2.1667 -0.7882 31 1 3.8490 -4.4356 0.1931 32 1 4.4323 -2.7809 0.5381 33 1 3.7569 -4.2097 2.6773 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260668540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:56 Heat of formation + Delta-G solvation = -55.091989 kcal Electronic energy + Delta-G solvation = -15078.601652 eV Core-core repulsion = 12717.492575 eV Total energy + Delta-G solvation = -2361.109077 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.73410 -36.35365 -35.24646 -31.92929 -30.68409 -27.82046 -26.09790 -25.17743 -22.97352 -21.46551 -19.46838 -18.69127 -16.73062 -16.38788 -15.13547 -14.56258 -13.85998 -13.63517 -13.37929 -13.31465 -12.71119 -12.47189 -12.22832 -11.72136 -11.71271 -11.10056 -10.85522 -10.65804 -10.56238 -10.21802 -10.00243 -9.85361 -9.73160 -9.17117 -8.88492 -8.48136 -8.33856 -8.07712 -6.21459 -3.85991 3.52647 3.54934 3.57681 3.73428 4.00321 4.64503 5.02393 5.20975 5.27472 5.50445 5.67280 5.87863 5.97491 6.06179 6.12456 6.19758 6.28632 6.43818 6.55664 6.72090 6.74060 6.93862 7.03694 7.23726 7.31306 7.45034 7.52446 7.57276 7.68835 8.32674 8.62156 9.02961 9.12285 9.79637 11.16635 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.027317 B = 0.014559 C = 0.011549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.740046 B = 1922.785789 C = 2423.909328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 C -0.125 4.125 4 C 0.050 3.950 5 H 0.040 0.960 6 C -0.572 4.572 7 H 0.051 0.949 8 C 0.028 3.972 9 N -0.914 5.914 10 Si 1.056 2.944 11 H -0.288 1.288 12 H -0.286 1.286 13 H -0.289 1.289 14 C -0.108 4.108 15 H 0.089 0.911 16 C -0.140 4.140 17 C 0.110 3.890 18 N -0.749 5.749 19 C 0.537 3.463 20 O -0.520 6.520 21 H 0.038 0.962 22 H 0.066 0.934 23 H 0.027 0.973 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.266 0.734 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -6.221 -7.659 9.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.103 4.103 3 C -0.182 4.182 4 C 0.031 3.969 5 H 0.058 0.942 6 C -0.611 4.611 7 H 0.069 0.931 8 C -0.175 4.175 9 N -0.551 5.551 10 Si 0.885 3.115 11 H -0.215 1.215 12 H -0.211 1.211 13 H -0.215 1.215 14 C -0.130 4.130 15 H 0.107 0.893 16 C -0.178 4.178 17 C -0.015 4.015 18 N -0.407 5.407 19 C 0.324 3.676 20 O -0.394 6.394 21 H 0.057 0.943 22 H 0.085 0.915 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.525 -4.887 -6.025 7.775 hybrid contribution 0.104 -1.553 -0.899 1.797 sum -0.421 -6.440 -6.924 9.465 Atomic orbital electron populations 1.21725 0.96597 1.00145 1.00333 1.21253 0.95262 0.96270 0.97505 1.21620 1.00581 0.96611 0.99408 1.18841 0.97130 0.86441 0.94496 0.94228 1.21681 1.05301 1.23243 1.10835 0.93097 1.25567 0.95548 0.96634 0.99796 1.70860 1.10023 1.41915 1.32305 0.83727 0.75238 0.76265 0.76226 1.21494 1.21133 1.21536 1.22159 1.00795 0.99160 0.90861 0.89299 1.22797 0.96184 1.00091 0.98716 1.21871 0.98136 1.00095 0.81420 1.46322 1.31618 1.50873 1.11865 1.20937 0.79503 0.77184 0.89973 1.90656 1.61753 1.62584 1.24423 0.94273 0.91461 0.95436 0.94653 0.93694 0.95804 0.91601 0.92189 0.91409 0.89392 0.91626 0.91830 0.76483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.64 37.16 0.32 -2.19 16 2 C -0.08 -1.71 2.57 -90.63 -0.23 -1.94 16 3 C -0.12 -2.65 8.40 37.16 0.31 -2.34 16 4 C 0.05 1.16 1.28 -91.77 -0.12 1.04 16 5 H 0.04 1.00 5.98 -51.93 -0.31 0.69 16 6 C -0.57 -15.49 5.23 -34.44 -0.18 -15.67 16 7 H 0.05 1.46 7.79 -52.49 -0.41 1.05 16 8 C 0.03 0.80 4.35 -17.82 -0.08 0.72 16 9 N -0.91 -26.80 13.36 55.43 0.74 -26.06 16 10 Si 1.06 26.11 29.91 -169.99 -5.09 21.02 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 C -0.11 -2.19 2.24 -90.63 -0.20 -2.39 16 15 H 0.09 1.84 6.55 -51.93 -0.34 1.50 16 16 C -0.14 -2.12 6.52 -25.10 -0.16 -2.29 16 17 C 0.11 1.56 7.78 -3.12 -0.02 1.54 16 18 N -0.75 -13.07 6.25 -59.12 -0.37 -13.44 16 19 C 0.54 11.95 7.36 -10.71 -0.08 11.87 16 20 O -0.52 -13.90 17.47 5.56 0.10 -13.80 16 21 H 0.04 0.70 6.49 -51.93 -0.34 0.37 16 22 H 0.07 1.43 7.10 -51.92 -0.37 1.07 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.64 6.19 -51.92 -0.32 0.32 16 25 H 0.04 0.99 7.92 -51.93 -0.41 0.58 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.57 6.96 -51.93 -0.36 1.21 16 28 H 0.27 7.72 6.19 -40.82 -0.25 7.47 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.27 6.05 -51.93 -0.31 0.96 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.40 6.11 8.96 -40.82 -0.37 5.74 16 LS Contribution 259.59 15.07 3.91 3.91 Total: -1.00 -31.72 259.59 -5.85 -37.57 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.70 Total: 2.45 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.45 Total: -11.65 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.37 Total: -39.51 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.10 Total: -13.80 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.09 Total: 21.02 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.72 -5.85 -37.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.521 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds