Wall clock time and date at job start Mon Mar 30 2020 02:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 C 1.52995 * 109.47765 * 120.00516 * 2 1 3 5 5 H 1.08996 * 109.47368 * 185.32807 * 4 2 1 6 6 C 1.50702 * 109.47108 * 305.32770 * 4 2 1 7 7 H 1.07998 * 120.00160 * 84.70522 * 6 4 2 8 8 C 1.37881 * 119.99918 * 264.71230 * 6 4 2 9 9 N 1.31511 * 119.99927 * 350.29164 * 8 6 4 10 10 Si 1.86795 * 119.99871 * 170.29398 * 8 6 4 11 11 H 1.48497 * 109.47381 * 59.99855 * 10 8 6 12 12 H 1.48496 * 109.47003 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47136 * 299.99841 * 10 8 6 14 14 C 1.53003 * 109.47021 * 65.32668 * 4 2 1 15 15 H 1.08996 * 110.43192 * 301.22184 * 14 4 2 16 16 C 1.54623 * 110.48522 * 63.76846 * 14 4 2 17 17 C 1.54479 * 101.76533 * 93.88315 * 16 14 4 18 18 N 1.46762 * 105.47411 * 25.41205 * 17 16 14 19 19 C 1.34743 * 111.35322 * 343.01935 * 18 17 16 20 20 O 1.21278 * 125.12275 * 180.38607 * 19 18 17 21 21 H 1.09003 * 109.46828 * 181.70449 * 1 2 3 22 22 H 1.09009 * 109.46592 * 301.69784 * 1 2 3 23 23 H 1.08991 * 109.47458 * 61.70072 * 1 2 3 24 24 H 1.09007 * 109.47114 * 240.00958 * 2 1 3 25 25 H 1.09004 * 109.47338 * 173.54856 * 3 2 1 26 26 H 1.08999 * 109.47635 * 293.55169 * 3 2 1 27 27 H 1.09000 * 109.47077 * 53.55093 * 3 2 1 28 28 H 0.97005 * 120.00100 * 358.49375 * 9 8 6 29 29 H 1.09002 * 110.96918 * 211.99524 * 16 14 4 30 30 H 1.08992 * 110.97442 * 335.72198 * 16 14 4 31 31 H 1.09001 * 110.24686 * 144.41508 * 17 16 14 32 32 H 1.09001 * 110.24242 * 266.32281 * 17 16 14 33 33 H 0.96998 * 124.34594 * 162.98177 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1259 -0.6394 1.2980 6 6 1.4330 -0.0913 2.4761 7 1 0.4563 -0.4027 2.8160 8 6 2.1244 0.8828 3.1648 9 7 3.3826 1.1281 2.8710 10 14 1.2740 1.8539 4.5150 11 1 0.8107 0.9245 5.5764 12 1 2.2272 2.8335 5.0955 13 1 0.1079 2.5762 3.9459 14 6 1.6424 -2.1973 1.1838 15 1 0.5594 -2.2968 1.1127 16 6 2.3296 -2.8904 -0.0155 17 6 3.5986 -3.4751 0.6435 18 7 3.2583 -3.6517 2.0601 19 6 2.1639 -2.9401 2.3942 20 8 1.6691 -2.8994 3.5007 21 1 -0.3633 -1.0273 0.0306 22 1 -0.3633 0.5400 0.8745 23 1 -0.3634 0.4871 -0.9047 24 1 1.8933 -0.5137 -0.8901 25 1 3.1239 1.4447 0.1155 26 1 1.7740 1.9220 -0.9420 27 1 1.5855 1.9885 0.8266 28 1 3.8307 0.6089 2.1849 29 1 1.7004 -3.6826 -0.4211 30 1 2.5888 -2.1667 -0.7882 31 1 3.8490 -4.4356 0.1931 32 1 4.4323 -2.7809 0.5381 33 1 3.7569 -4.2097 2.6773 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260668540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:56 Heat of formation + Delta-G solvation = -77.637832 kcal Electronic energy + Delta-G solvation = -15079.579313 eV Core-core repulsion = 12717.492575 eV Total energy + Delta-G solvation = -2362.086738 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.31943 -38.13996 -36.88205 -33.96071 -32.20123 -29.35415 -27.72069 -26.97661 -24.89153 -22.83569 -21.06863 -20.47064 -18.41828 -18.13162 -16.72577 -16.22972 -15.65913 -15.57580 -14.95599 -14.88738 -14.35120 -14.13578 -13.81794 -13.50644 -13.11922 -12.75313 -12.54618 -12.48480 -12.12201 -12.00373 -11.88907 -11.54315 -11.36872 -10.93934 -10.76903 -10.28918 -10.12309 -9.91797 -8.41974 -6.03761 1.49415 1.56550 1.73661 1.82622 2.60985 2.62077 3.33485 3.69991 3.80648 4.08649 4.34261 4.39792 4.49297 4.53429 4.73282 4.83684 4.88033 4.97931 4.99660 5.17292 5.23255 5.30146 5.38105 5.48945 5.64393 5.73826 5.82897 6.09233 6.15708 6.32329 6.41029 6.88457 7.49413 7.64120 8.97285 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.027317 B = 0.014559 C = 0.011549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.740046 B = 1922.785789 C = 2423.909328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.119 4.119 4 C 0.051 3.949 5 H 0.015 0.985 6 C -0.565 4.565 7 H 0.025 0.975 8 C -0.017 4.017 9 N -0.938 5.938 10 Si 1.085 2.915 11 H -0.293 1.293 12 H -0.286 1.286 13 H -0.269 1.269 14 C -0.112 4.112 15 H 0.082 0.918 16 C -0.127 4.127 17 C 0.105 3.895 18 N -0.737 5.737 19 C 0.519 3.481 20 O -0.582 6.582 21 H 0.049 0.951 22 H 0.035 0.965 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.027 0.973 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.258 0.742 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.400 -7.285 -10.147 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.100 4.100 3 C -0.176 4.176 4 C 0.032 3.968 5 H 0.033 0.967 6 C -0.604 4.604 7 H 0.044 0.956 8 C -0.216 4.216 9 N -0.578 5.578 10 Si 0.911 3.089 11 H -0.220 1.220 12 H -0.211 1.211 13 H -0.194 1.194 14 C -0.134 4.134 15 H 0.101 0.899 16 C -0.165 4.165 17 C -0.019 4.019 18 N -0.392 5.392 19 C 0.307 3.693 20 O -0.461 6.461 21 H 0.068 0.932 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.082 0.918 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.498 -5.971 -8.563 10.451 hybrid contribution 0.112 -1.289 -0.156 1.303 sum -0.386 -7.260 -8.719 11.352 Atomic orbital electron populations 1.21651 0.95579 1.00752 1.00318 1.21201 0.96056 0.95495 0.97215 1.21541 0.99133 0.97275 0.99644 1.18773 0.95291 0.88543 0.94211 0.96662 1.21873 1.03957 1.22575 1.11986 0.95613 1.26444 0.95755 0.97915 1.01489 1.70942 1.10659 1.42934 1.33276 0.83339 0.75322 0.75568 0.74669 1.22025 1.21127 1.19399 1.22069 1.00958 0.97530 0.92807 0.89948 1.22822 0.96204 1.00780 0.96650 1.22203 0.97696 1.02743 0.79219 1.46332 1.29922 1.49225 1.13746 1.21457 0.80545 0.77548 0.89735 1.90611 1.63903 1.64875 1.26711 0.93186 0.94604 0.92498 0.91044 0.95402 0.92581 0.95041 0.93013 0.88244 0.88008 0.86799 0.91766 0.75372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 8.64 71.98 0.62 -3.93 16 2 C -0.08 -3.12 2.57 -10.80 -0.03 -3.15 16 3 C -0.12 -4.90 8.40 71.98 0.60 -4.30 16 4 C 0.05 2.34 1.28 -11.54 -0.01 2.33 16 5 H 0.02 0.77 5.98 -2.39 -0.01 0.76 16 6 C -0.57 -31.31 5.23 25.60 0.13 -31.18 16 7 H 0.03 1.52 7.79 -2.91 -0.02 1.50 16 8 C -0.02 -1.00 4.35 84.66 0.37 -0.63 16 9 N -0.94 -56.46 13.36 21.45 0.29 -56.17 16 10 Si 1.08 53.96 29.91 68.60 2.05 56.01 16 11 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 12 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 C -0.11 -4.38 2.24 -10.80 -0.02 -4.40 16 15 H 0.08 3.31 6.55 -2.39 -0.02 3.29 16 16 C -0.13 -3.31 6.52 31.65 0.21 -3.11 16 17 C 0.10 2.56 7.78 86.83 0.68 3.24 16 18 N -0.74 -24.36 6.25 -459.37 -2.87 -27.24 16 19 C 0.52 23.02 7.36 87.85 0.65 23.67 16 20 O -0.58 -32.04 17.47 -3.02 -0.05 -32.09 16 21 H 0.05 1.68 6.49 -2.39 -0.02 1.67 16 22 H 0.03 1.50 7.10 -2.38 -0.02 1.48 16 23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 2.28 6.19 -2.38 -0.01 2.26 16 25 H 0.03 1.21 7.92 -2.39 -0.02 1.19 16 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.03 1.48 6.96 -2.39 -0.02 1.47 16 28 H 0.26 15.42 6.19 -92.70 -0.57 14.85 16 29 H 0.10 2.03 8.14 -2.39 -0.02 2.02 16 30 H 0.10 2.41 6.05 -2.39 -0.01 2.40 16 31 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.41 11.88 8.96 -92.71 -0.83 11.05 16 Total: -1.00 -72.14 259.59 3.07 -69.06 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.47 Total: 11.89 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 3.19 Total: -21.47 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.58 Total: -83.40 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.05 Total: -32.09 kcal Atomic # 14 Polarization: 53.96 SS G_CDS: 2.05 Total: 56.01 kcal Total: -72.14 3.07 -69.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.575 kcal (2) G-P(sol) polarization free energy of solvation -72.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds