Wall clock time and date at job start Mon Mar 30 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 H 1.09005 * 109.46925 * 176.78108 * 3 2 1 5 5 C 1.50707 * 109.46847 * 56.78600 * 3 2 1 6 6 H 1.08001 * 119.99544 * 239.99802 * 5 3 2 7 7 C 1.37872 * 119.99975 * 59.99752 * 5 3 2 8 8 N 1.31509 * 120.00360 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 120.00008 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46737 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47069 * 119.99743 * 9 7 5 12 12 H 1.48495 * 109.46954 * 240.00226 * 9 7 5 13 13 C 1.52994 * 109.47653 * 296.78450 * 3 2 1 14 14 H 1.09006 * 109.66836 * 62.82422 * 13 3 2 15 15 C 1.53347 * 109.67816 * 183.36065 * 13 3 2 16 16 C 1.52902 * 108.68456 * 187.25141 * 15 13 3 17 17 N 1.45751 * 110.49866 * 309.27383 * 16 15 13 18 18 C 1.33354 * 124.10640 * 19.04478 * 17 16 15 19 19 O 1.21281 * 118.24626 * 177.77782 * 18 17 16 20 20 C 1.50177 * 123.50652 * 357.79430 * 18 17 16 21 21 H 1.09000 * 109.46905 * 59.91838 * 1 2 3 22 22 H 1.08998 * 109.46817 * 179.91756 * 1 2 3 23 23 H 1.08999 * 109.47098 * 299.91926 * 1 2 3 24 24 H 1.08992 * 109.46947 * 120.00057 * 2 1 3 25 25 H 1.09001 * 109.46926 * 240.00617 * 2 1 3 26 26 H 0.97001 * 120.00381 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.60029 * 307.02100 * 15 13 3 28 28 H 1.09000 * 109.59969 * 67.51089 * 15 13 3 29 29 H 1.09010 * 109.30506 * 188.95410 * 16 15 13 30 30 H 1.09003 * 109.28677 * 69.58780 * 16 15 13 31 31 H 0.97003 * 117.94972 * 199.06472 * 17 16 15 32 32 H 1.08998 * 109.40307 * 257.45661 * 20 18 17 33 33 H 1.08999 * 109.32955 * 137.67326 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1285 1.4431 0.0577 5 6 1.4736 2.1755 1.1888 6 1 0.8592 3.0513 1.0405 7 6 1.7397 1.7281 2.4654 8 7 2.4874 0.6614 2.6459 9 14 1.0382 2.6370 3.9390 10 1 0.2372 3.7963 3.4700 11 1 0.1709 1.7189 4.7199 12 1 2.1494 3.1189 4.7982 13 6 1.5972 2.1401 -1.2876 14 1 0.5087 2.1859 -1.3245 15 6 2.1761 3.5594 -1.3313 16 6 1.5767 4.2963 -2.5295 17 7 1.7114 3.4962 -3.7403 18 6 1.9340 2.1814 -3.7468 19 8 1.9875 1.6136 -4.8172 20 6 2.1217 1.3661 -2.4996 21 1 -0.3633 0.5151 -0.8893 22 1 -0.3633 -1.0277 -0.0015 23 1 -0.3633 0.5126 0.8907 24 1 1.8933 -0.5138 0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 2.6744 0.3463 3.5440 27 1 1.9207 4.0870 -0.4123 28 1 3.2597 3.5092 -1.4380 29 1 2.0954 5.2454 -2.6653 30 1 0.5206 4.4902 -2.3414 31 1 1.6346 3.9485 -4.5950 32 1 3.1818 1.1534 -2.3622 33 1 1.5738 0.4287 -2.5955 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260686231.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:01 Heat of formation + Delta-G solvation = -64.618275 kcal Electronic energy + Delta-G solvation = -14688.996276 eV Core-core repulsion = 12327.474108 eV Total energy + Delta-G solvation = -2361.522168 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.87970 -36.85036 -34.95997 -32.22904 -30.67944 -29.08561 -27.00200 -23.94431 -23.46208 -21.62505 -19.13247 -18.46458 -16.93795 -16.23293 -15.44413 -14.89800 -14.58096 -14.03806 -13.66071 -13.37269 -12.83419 -12.44772 -12.34315 -11.83116 -11.38601 -11.07055 -10.96785 -10.69503 -10.42796 -10.38241 -10.31052 -9.99159 -9.55473 -9.35560 -8.84232 -8.77753 -8.67811 -8.32759 -5.99942 -4.04850 3.02424 3.26579 3.36022 3.37506 3.65863 4.40721 5.13625 5.24802 5.25827 5.35751 5.51697 5.78857 5.83795 6.11231 6.31153 6.37425 6.47928 6.49166 6.66958 6.78337 6.83025 6.94653 7.05453 7.12440 7.48846 7.52156 7.64595 7.74053 7.89652 8.13990 8.42067 8.55951 8.96963 9.58617 11.05795 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.041522 B = 0.009607 C = 0.008462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.174295 B = 2913.732967 C = 3308.257056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.118 4.118 3 C 0.055 3.945 4 H 0.027 0.973 5 C -0.503 4.503 6 H 0.056 0.944 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 C -0.080 4.080 14 H 0.067 0.933 15 C -0.126 4.126 16 C 0.108 3.892 17 N -0.722 5.722 18 C 0.522 3.478 19 O -0.577 6.577 20 C -0.131 4.131 21 H 0.030 0.970 22 H 0.020 0.980 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.017 0.983 26 H 0.258 0.742 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.390 0.610 32 H 0.094 0.906 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 5.300 -5.896 8.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.156 4.156 3 C 0.036 3.964 4 H 0.045 0.955 5 C -0.542 4.542 6 H 0.074 0.926 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.099 4.099 14 H 0.086 0.914 15 C -0.163 4.163 16 C -0.016 4.016 17 N -0.373 5.373 18 C 0.310 3.690 19 O -0.457 6.457 20 C -0.171 4.171 21 H 0.049 0.951 22 H 0.039 0.961 23 H 0.080 0.920 24 H 0.106 0.894 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.224 0.776 32 H 0.113 0.887 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.461 4.783 -6.056 7.855 hybrid contribution -0.424 0.724 0.665 1.070 sum -1.885 5.507 -5.391 7.934 Atomic orbital electron populations 1.21632 0.98150 0.98009 1.00974 1.21559 0.94324 0.99475 1.00195 1.18720 0.96256 0.91658 0.89728 0.95528 1.21108 1.31087 1.11602 0.90370 0.92593 1.24921 0.95215 0.94984 0.98737 1.69884 1.37977 1.23340 1.21475 0.86673 0.78891 0.79912 0.83325 1.19857 1.21193 1.21217 1.21390 0.99777 0.93424 0.95280 0.91438 1.21918 1.00117 0.97309 0.96979 1.21512 1.00891 0.93916 0.85277 1.45534 1.73274 1.08520 1.09935 1.20621 0.74304 0.82204 0.91837 1.90685 1.52613 1.69882 1.32560 1.21838 1.04016 0.99298 0.91929 0.95067 0.96088 0.91970 0.89395 0.96472 0.93164 0.88604 0.91952 0.91448 0.92092 0.77610 0.88732 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.34 37.16 0.35 -2.35 16 2 C -0.12 -2.62 5.15 -26.73 -0.14 -2.76 16 3 C 0.05 1.22 1.65 -91.77 -0.15 1.07 16 4 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 5 C -0.50 -12.33 6.35 -34.44 -0.22 -12.55 16 6 H 0.06 1.35 6.99 -52.49 -0.37 0.98 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -24.07 11.35 55.43 0.63 -23.44 16 9 Si 0.88 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 13 C -0.08 -1.47 1.43 -90.41 -0.13 -1.60 16 14 H 0.07 1.28 6.65 -51.93 -0.35 0.93 16 15 C -0.13 -2.00 5.20 -26.60 -0.14 -2.14 16 16 C 0.11 1.39 7.17 -4.50 -0.03 1.35 16 17 N -0.72 -10.28 5.45 -61.39 -0.33 -10.61 16 18 C 0.52 9.17 7.71 -11.87 -0.09 9.07 16 19 O -0.58 -11.96 17.78 5.56 0.10 -11.87 16 20 C -0.13 -2.31 4.57 -28.10 -0.13 -2.44 16 21 H 0.03 0.59 6.57 -51.93 -0.34 0.25 16 22 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 1.39 7.13 -51.93 -0.37 1.02 16 24 H 0.09 2.23 6.16 -51.93 -0.32 1.91 16 25 H 0.02 0.35 6.49 -51.93 -0.34 0.01 16 26 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.10 1.62 6.70 -51.93 -0.35 1.27 16 28 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 29 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.39 4.82 8.80 -40.82 -0.36 4.46 16 32 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 33 H 0.10 1.73 7.00 -51.93 -0.36 1.37 16 LS Contribution 258.91 15.07 3.90 3.90 Total: -1.00 -28.25 258.91 -6.32 -34.57 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.82 Total: 3.12 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.77 Total: -10.83 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.29 Total: -34.05 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.10 Total: -11.87 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.25 -6.32 -34.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686231.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.051 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds