Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 H 1.09005 * 109.46925 * 176.78108 * 3 2 1 5 5 C 1.50707 * 109.46847 * 56.78600 * 3 2 1 6 6 H 1.08001 * 119.99544 * 239.99802 * 5 3 2 7 7 C 1.37872 * 119.99975 * 59.99752 * 5 3 2 8 8 N 1.31509 * 120.00360 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 120.00008 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46737 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47069 * 119.99743 * 9 7 5 12 12 H 1.48495 * 109.46954 * 240.00226 * 9 7 5 13 13 C 1.52994 * 109.47653 * 296.78450 * 3 2 1 14 14 H 1.09006 * 109.66836 * 62.82422 * 13 3 2 15 15 C 1.53347 * 109.67816 * 183.36065 * 13 3 2 16 16 C 1.52902 * 108.68456 * 187.25141 * 15 13 3 17 17 N 1.45751 * 110.49866 * 309.27383 * 16 15 13 18 18 C 1.33354 * 124.10640 * 19.04478 * 17 16 15 19 19 O 1.21281 * 118.24626 * 177.77782 * 18 17 16 20 20 C 1.50177 * 123.50652 * 357.79430 * 18 17 16 21 21 H 1.09000 * 109.46905 * 59.91838 * 1 2 3 22 22 H 1.08998 * 109.46817 * 179.91756 * 1 2 3 23 23 H 1.08999 * 109.47098 * 299.91926 * 1 2 3 24 24 H 1.08992 * 109.46947 * 120.00057 * 2 1 3 25 25 H 1.09001 * 109.46926 * 240.00617 * 2 1 3 26 26 H 0.97001 * 120.00381 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.60029 * 307.02100 * 15 13 3 28 28 H 1.09000 * 109.59969 * 67.51089 * 15 13 3 29 29 H 1.09010 * 109.30506 * 188.95410 * 16 15 13 30 30 H 1.09003 * 109.28677 * 69.58780 * 16 15 13 31 31 H 0.97003 * 117.94972 * 199.06472 * 17 16 15 32 32 H 1.08998 * 109.40307 * 257.45661 * 20 18 17 33 33 H 1.08999 * 109.32955 * 137.67326 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1285 1.4431 0.0577 5 6 1.4736 2.1755 1.1888 6 1 0.8592 3.0513 1.0405 7 6 1.7397 1.7281 2.4654 8 7 2.4874 0.6614 2.6459 9 14 1.0382 2.6370 3.9390 10 1 0.2372 3.7963 3.4700 11 1 0.1709 1.7189 4.7199 12 1 2.1494 3.1189 4.7982 13 6 1.5972 2.1401 -1.2876 14 1 0.5087 2.1859 -1.3245 15 6 2.1761 3.5594 -1.3313 16 6 1.5767 4.2963 -2.5295 17 7 1.7114 3.4962 -3.7403 18 6 1.9340 2.1814 -3.7468 19 8 1.9875 1.6136 -4.8172 20 6 2.1217 1.3661 -2.4996 21 1 -0.3633 0.5151 -0.8893 22 1 -0.3633 -1.0277 -0.0015 23 1 -0.3633 0.5126 0.8907 24 1 1.8933 -0.5138 0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 2.6744 0.3463 3.5440 27 1 1.9207 4.0870 -0.4123 28 1 3.2597 3.5092 -1.4380 29 1 2.0954 5.2454 -2.6653 30 1 0.5206 4.4902 -2.3414 31 1 1.6346 3.9485 -4.5950 32 1 3.1818 1.1534 -2.3622 33 1 1.5738 0.4287 -2.5955 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260686231.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = -82.609703 kcal Electronic energy + Delta-G solvation = -14689.776443 eV Core-core repulsion = 12327.474108 eV Total energy + Delta-G solvation = -2362.302335 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.25401 -38.42537 -36.42352 -33.99217 -32.30314 -30.45132 -28.73962 -25.74723 -24.84689 -23.11069 -20.76363 -19.89697 -18.27650 -18.02486 -16.86671 -16.53945 -16.15333 -15.48006 -15.20162 -14.90062 -14.26730 -14.14548 -13.92526 -13.50728 -12.86233 -12.79097 -12.57035 -12.36050 -12.19043 -11.95323 -11.80515 -11.71008 -11.23701 -11.06797 -10.51131 -10.39764 -10.27229 -9.99224 -7.96672 -6.05852 1.44401 1.49263 1.56785 1.64780 2.45513 2.51105 3.32830 3.79704 4.01555 4.08389 4.12581 4.55574 4.65324 4.71437 4.75017 4.80402 4.87192 5.06733 5.09118 5.21696 5.33342 5.40475 5.51527 5.68876 5.75759 5.80821 5.93874 6.05808 6.26562 6.37780 6.50343 7.04429 7.26729 7.60151 9.08210 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.041522 B = 0.009607 C = 0.008462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.174295 B = 2913.732967 C = 3308.257056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.117 4.117 3 C 0.055 3.945 4 H -0.005 1.005 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.938 3.062 10 H -0.262 1.262 11 H -0.291 1.291 12 H -0.289 1.289 13 C -0.071 4.071 14 H 0.067 0.933 15 C -0.125 4.125 16 C 0.113 3.887 17 N -0.706 5.706 18 C 0.523 3.477 19 O -0.613 6.613 20 C -0.126 4.126 21 H 0.048 0.952 22 H 0.034 0.966 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.030 0.970 26 H 0.254 0.746 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.404 0.596 32 H 0.092 0.908 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 7.032 -6.707 10.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.155 4.155 3 C 0.036 3.964 4 H 0.014 0.986 5 C -0.537 4.537 6 H 0.080 0.920 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.766 3.234 10 H -0.186 1.186 11 H -0.218 1.218 12 H -0.216 1.216 13 C -0.090 4.090 14 H 0.085 0.915 15 C -0.163 4.163 16 C -0.010 4.010 17 N -0.357 5.357 18 C 0.311 3.689 19 O -0.496 6.496 20 C -0.166 4.166 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.095 0.905 31 H 0.240 0.760 32 H 0.110 0.890 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.416 6.567 -6.867 9.804 hybrid contribution -0.109 0.192 0.925 0.951 sum -2.525 6.759 -5.943 9.348 Atomic orbital electron populations 1.21519 0.96690 0.98945 1.00722 1.21477 0.95581 0.99288 0.99147 1.18652 0.94241 0.92104 0.91387 0.98637 1.21420 1.30036 1.11347 0.90929 0.92029 1.25592 0.95865 0.95724 1.01262 1.70031 1.39622 1.24857 1.21532 0.85806 0.78060 0.79066 0.80506 1.18550 1.21776 1.21574 1.21208 0.99684 0.94728 0.93344 0.91455 1.21854 1.00062 0.95907 0.98433 1.21605 1.02136 0.94255 0.83017 1.45430 1.71454 1.07495 1.11301 1.20458 0.74356 0.83176 0.90896 1.90676 1.54620 1.70884 1.33441 1.21729 1.03772 0.99219 0.91889 0.93303 0.94672 0.94005 0.92818 0.95138 0.93631 0.89335 0.92280 0.87789 0.90474 0.76017 0.88994 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.34 71.98 0.67 -4.25 16 2 C -0.12 -5.24 5.15 30.60 0.16 -5.08 16 3 C 0.05 2.44 1.65 -11.54 -0.02 2.42 16 4 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 5 C -0.50 -24.23 6.35 25.60 0.16 -24.07 16 6 H 0.06 2.87 6.99 -2.91 -0.02 2.85 16 7 C 0.01 0.69 5.30 84.65 0.45 1.14 16 8 N -0.92 -50.97 11.35 21.44 0.24 -50.73 16 9 Si 0.94 41.31 29.54 68.60 2.03 43.33 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 13 C -0.07 -2.51 1.43 -10.66 -0.02 -2.52 16 14 H 0.07 2.39 6.65 -2.38 -0.02 2.38 16 15 C -0.12 -3.70 5.20 30.68 0.16 -3.54 16 16 C 0.11 2.44 7.17 86.49 0.62 3.06 16 17 N -0.71 -17.79 5.45 -467.34 -2.55 -20.34 16 18 C 0.52 17.34 7.71 87.71 0.68 18.02 16 19 O -0.61 -24.58 17.78 -3.03 -0.05 -24.63 16 20 C -0.13 -4.31 4.57 29.71 0.14 -4.17 16 21 H 0.05 1.78 6.57 -2.39 -0.02 1.76 16 22 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.04 1.84 7.13 -2.39 -0.02 1.82 16 24 H 0.05 2.79 6.16 -2.39 -0.01 2.77 16 25 H 0.03 1.25 6.49 -2.39 -0.02 1.23 16 26 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 27 H 0.09 2.78 6.70 -2.39 -0.02 2.77 16 28 H 0.06 1.78 8.12 -2.39 -0.02 1.77 16 29 H 0.10 1.61 8.14 -2.38 -0.02 1.60 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.40 8.52 8.80 -92.71 -0.82 7.71 16 32 H 0.09 3.17 8.10 -2.39 -0.02 3.15 16 33 H 0.09 3.19 7.00 -2.39 -0.02 3.17 16 Total: -1.00 -60.48 258.91 2.96 -57.52 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.29 Total: 13.84 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 3.00 Total: -19.00 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -2.30 Total: -71.07 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -60.48 2.96 -57.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686231.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.086 kcal (2) G-P(sol) polarization free energy of solvation -60.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds