Wall clock time and date at job start Mon Mar 30 2020 03:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46845 * 2 1 4 4 H 1.08998 * 109.46848 * 179.22463 * 3 2 1 5 5 C 1.53002 * 109.46974 * 299.22265 * 3 2 1 6 6 C 1.50698 * 109.47441 * 295.85076 * 5 3 2 7 7 H 1.08000 * 119.99939 * 355.17907 * 6 5 3 8 8 C 1.37874 * 120.00084 * 175.17508 * 6 5 3 9 9 N 1.31516 * 119.99840 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00038 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47107 * 89.99686 * 10 8 6 12 12 H 1.48498 * 109.47186 * 209.99746 * 10 8 6 13 13 H 1.48495 * 109.47116 * 330.00021 * 10 8 6 14 14 C 1.52994 * 109.47150 * 59.22541 * 3 2 1 15 15 H 1.09003 * 110.43673 * 297.45328 * 14 3 2 16 16 C 1.54629 * 110.48769 * 59.99922 * 14 3 2 17 17 C 1.54485 * 101.76401 * 143.60617 * 16 14 3 18 18 N 1.46762 * 105.47313 * 334.58456 * 17 16 14 19 19 C 1.34415 * 111.30550 * 17.01743 * 18 17 16 20 20 O 1.21274 * 124.94557 * 179.57048 * 19 18 17 21 21 H 1.09004 * 109.47214 * 182.37587 * 1 2 3 22 22 H 1.09001 * 109.47450 * 302.37437 * 1 2 3 23 23 H 1.08997 * 109.47212 * 62.37312 * 1 2 3 24 24 H 1.08999 * 109.47151 * 240.00438 * 2 1 3 25 25 H 1.09001 * 109.47346 * 119.99737 * 2 1 3 26 26 H 1.08992 * 109.46893 * 55.85535 * 5 3 2 27 27 H 1.09005 * 109.46977 * 175.85290 * 5 3 2 28 28 H 0.97003 * 120.00195 * 180.02562 * 9 8 6 29 29 H 1.08998 * 110.96846 * 25.49287 * 16 14 3 30 30 H 1.08993 * 110.96983 * 261.72026 * 16 14 3 31 31 H 1.08998 * 110.24583 * 215.58243 * 17 16 14 32 32 H 1.09002 * 110.31656 * 93.62388 * 17 16 14 33 33 H 0.97001 * 124.34849 * 196.74429 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1298 1.4426 0.0139 5 6 1.5459 2.1581 -1.2589 6 6 2.1461 1.5041 -2.4768 7 1 2.8728 0.7134 -2.3622 8 6 1.7673 1.9149 -3.7372 9 7 2.2907 1.3438 -4.7999 10 14 0.5107 3.2828 -3.9353 11 1 1.2089 4.5924 -3.9889 12 1 -0.2515 3.0764 -5.1929 13 1 -0.4241 3.2671 -2.7816 14 6 1.5141 2.1694 1.2393 15 1 0.4253 2.2179 1.2187 16 6 2.0001 1.4646 2.5270 17 6 2.2421 2.6639 3.4703 18 7 2.5083 3.8073 2.5895 19 6 2.1043 3.5593 1.3317 20 8 2.1988 4.3368 0.4057 21 1 -0.3634 -1.0268 0.0426 22 1 -0.3634 0.5503 0.8679 23 1 -0.3633 0.4765 -0.9105 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.4591 2.0939 -1.3104 27 1 1.8468 3.2052 -1.2234 28 1 2.0245 1.6331 -5.6867 29 1 2.9254 0.9175 2.3466 30 1 1.2295 0.8046 2.9251 31 1 3.1032 2.4725 4.1105 32 1 1.3564 2.8531 4.0768 33 1 2.9191 4.6371 2.8788 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260698756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:19 Heat of formation + Delta-G solvation = -53.297020 kcal Electronic energy + Delta-G solvation = -14658.689559 eV Core-core repulsion = 12297.658318 eV Total energy + Delta-G solvation = -2361.031241 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.23689 -36.35340 -35.70505 -32.31132 -30.37064 -29.11930 -27.38941 -24.60520 -22.81580 -21.18110 -20.28649 -18.24262 -17.07546 -16.51849 -16.28066 -14.64539 -14.21609 -13.99881 -13.84994 -13.44773 -12.90551 -12.56828 -12.41568 -12.14759 -11.95630 -11.46327 -11.21568 -11.07268 -10.55314 -10.40162 -10.13831 -10.00778 -9.54548 -9.23240 -9.11077 -8.94722 -8.71942 -8.30002 -5.88400 -3.82683 3.00774 3.46457 3.52379 3.56657 3.59175 4.62602 4.63453 4.71317 4.90860 5.26386 5.46930 5.47713 5.55656 5.77538 5.82690 5.89889 5.97966 5.99809 6.25292 6.43104 6.58492 6.72613 6.85730 6.99409 7.12265 7.16290 7.20508 7.58815 7.79506 8.00390 8.63459 8.70294 9.17170 9.76416 11.25235 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.010639 C = 0.009144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.170361 B = 2631.128795 C = 3061.293135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.053 4.053 4 H 0.061 0.939 5 C -0.028 4.028 6 C -0.505 4.505 7 H 0.070 0.930 8 C 0.064 3.936 9 N -0.911 5.911 10 Si 0.877 3.123 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.265 1.265 14 C -0.121 4.121 15 H 0.105 0.895 16 C -0.129 4.129 17 C 0.103 3.897 18 N -0.744 5.744 19 C 0.519 3.481 20 O -0.512 6.512 21 H 0.041 0.959 22 H 0.042 0.958 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.017 0.983 27 H 0.043 0.957 28 H 0.260 0.740 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 -0.106 17.734 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.072 4.072 4 H 0.080 0.920 5 C -0.065 4.065 6 C -0.543 4.543 7 H 0.088 0.912 8 C -0.135 4.135 9 N -0.551 5.551 10 Si 0.705 3.295 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.190 1.190 14 C -0.143 4.143 15 H 0.123 0.877 16 C -0.167 4.167 17 C -0.022 4.022 18 N -0.401 5.401 19 C 0.305 3.695 20 O -0.386 6.386 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.376 0.201 16.993 17.160 hybrid contribution -0.436 1.073 0.005 1.158 sum -2.813 1.274 16.998 17.277 Atomic orbital electron populations 1.21826 0.96899 1.00157 1.01843 1.21429 0.95506 0.96356 1.01128 1.20905 0.99267 0.94241 0.92823 0.92037 1.19953 0.96374 0.97854 0.92341 1.21125 1.24330 1.19641 0.89188 0.91228 1.24967 0.96272 0.96290 0.96011 1.69924 1.44410 1.42868 0.97873 0.86810 0.82397 0.83190 0.77080 1.20371 1.21871 1.19013 1.22181 1.02027 0.92822 0.97251 0.87747 1.22701 1.02837 0.96624 0.94546 1.22006 1.00872 0.86259 0.93035 1.46301 1.64670 1.18522 1.10656 1.21072 0.76960 0.89637 0.81799 1.90744 1.55378 1.52674 1.39768 0.94005 0.93924 0.91501 0.90402 0.93983 0.96449 0.93864 0.93064 0.89863 0.89578 0.90892 0.91688 0.75899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.22 37.16 0.34 -2.12 16 2 C -0.11 -1.88 5.28 -26.73 -0.14 -2.03 16 3 C -0.05 -1.05 1.58 -90.62 -0.14 -1.20 16 4 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 5 C -0.03 -0.71 3.18 -27.88 -0.09 -0.79 16 6 C -0.50 -14.76 8.85 -34.44 -0.30 -15.07 16 7 H 0.07 2.16 7.43 -52.49 -0.39 1.77 16 8 C 0.06 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.91 -29.09 13.96 55.43 0.77 -28.32 16 10 Si 0.88 23.43 27.57 -169.99 -4.69 18.75 16 11 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.29 -7.64 7.11 56.52 0.40 -7.23 16 13 H -0.27 -6.85 6.41 56.52 0.36 -6.48 16 14 C -0.12 -1.93 2.02 -90.63 -0.18 -2.11 16 15 H 0.10 1.63 6.56 -51.93 -0.34 1.28 16 16 C -0.13 -1.43 5.60 -25.10 -0.14 -1.57 16 17 C 0.10 0.96 7.78 -3.12 -0.02 0.94 16 18 N -0.74 -9.45 6.24 -59.20 -0.37 -9.82 16 19 C 0.52 9.19 7.84 -10.86 -0.09 9.11 16 20 O -0.51 -11.66 15.33 5.56 0.09 -11.57 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.04 0.60 6.35 -51.93 -0.33 0.27 16 23 H 0.07 1.29 6.48 -51.93 -0.34 0.95 16 24 H 0.08 1.60 6.97 -51.93 -0.36 1.24 16 25 H 0.04 0.61 7.19 -51.93 -0.37 0.23 16 26 H 0.02 0.44 5.01 -51.93 -0.26 0.18 16 27 H 0.04 1.18 5.13 -51.93 -0.27 0.91 16 28 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 29 H 0.08 0.92 7.76 -51.93 -0.40 0.52 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 4.37 8.96 -40.82 -0.37 4.01 16 LS Contribution 257.41 15.07 3.88 3.88 Total: -1.00 -34.56 257.41 -5.90 -40.46 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.72 Total: -0.40 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -0.87 Total: -12.98 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.40 Total: -38.14 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.69 Total: 18.75 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.56 -5.90 -40.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260698756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.837 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds