Wall clock time and date at job start Mon Mar 30 2020 03:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46845 * 2 1 4 4 H 1.08998 * 109.46848 * 179.22463 * 3 2 1 5 5 C 1.53002 * 109.46974 * 299.22265 * 3 2 1 6 6 C 1.50698 * 109.47441 * 295.85076 * 5 3 2 7 7 H 1.08000 * 119.99939 * 355.17907 * 6 5 3 8 8 C 1.37874 * 120.00084 * 175.17508 * 6 5 3 9 9 N 1.31516 * 119.99840 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00038 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47107 * 89.99686 * 10 8 6 12 12 H 1.48498 * 109.47186 * 209.99746 * 10 8 6 13 13 H 1.48495 * 109.47116 * 330.00021 * 10 8 6 14 14 C 1.52994 * 109.47150 * 59.22541 * 3 2 1 15 15 H 1.09003 * 110.43673 * 297.45328 * 14 3 2 16 16 C 1.54629 * 110.48769 * 59.99922 * 14 3 2 17 17 C 1.54485 * 101.76401 * 143.60617 * 16 14 3 18 18 N 1.46762 * 105.47313 * 334.58456 * 17 16 14 19 19 C 1.34415 * 111.30550 * 17.01743 * 18 17 16 20 20 O 1.21274 * 124.94557 * 179.57048 * 19 18 17 21 21 H 1.09004 * 109.47214 * 182.37587 * 1 2 3 22 22 H 1.09001 * 109.47450 * 302.37437 * 1 2 3 23 23 H 1.08997 * 109.47212 * 62.37312 * 1 2 3 24 24 H 1.08999 * 109.47151 * 240.00438 * 2 1 3 25 25 H 1.09001 * 109.47346 * 119.99737 * 2 1 3 26 26 H 1.08992 * 109.46893 * 55.85535 * 5 3 2 27 27 H 1.09005 * 109.46977 * 175.85290 * 5 3 2 28 28 H 0.97003 * 120.00195 * 180.02562 * 9 8 6 29 29 H 1.08998 * 110.96846 * 25.49287 * 16 14 3 30 30 H 1.08993 * 110.96983 * 261.72026 * 16 14 3 31 31 H 1.08998 * 110.24583 * 215.58243 * 17 16 14 32 32 H 1.09002 * 110.31656 * 93.62388 * 17 16 14 33 33 H 0.97001 * 124.34849 * 196.74429 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1298 1.4426 0.0139 5 6 1.5459 2.1581 -1.2589 6 6 2.1461 1.5041 -2.4768 7 1 2.8728 0.7134 -2.3622 8 6 1.7673 1.9149 -3.7372 9 7 2.2907 1.3438 -4.7999 10 14 0.5107 3.2828 -3.9353 11 1 1.2089 4.5924 -3.9889 12 1 -0.2515 3.0764 -5.1929 13 1 -0.4241 3.2671 -2.7816 14 6 1.5141 2.1694 1.2393 15 1 0.4253 2.2179 1.2187 16 6 2.0001 1.4646 2.5270 17 6 2.2421 2.6639 3.4703 18 7 2.5083 3.8073 2.5895 19 6 2.1043 3.5593 1.3317 20 8 2.1988 4.3368 0.4057 21 1 -0.3634 -1.0268 0.0426 22 1 -0.3634 0.5503 0.8679 23 1 -0.3633 0.4765 -0.9105 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.4591 2.0939 -1.3104 27 1 1.8468 3.2052 -1.2234 28 1 2.0245 1.6331 -5.6867 29 1 2.9254 0.9175 2.3466 30 1 1.2295 0.8046 2.9251 31 1 3.1032 2.4725 4.1105 32 1 1.3564 2.8531 4.0768 33 1 2.9191 4.6371 2.8788 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260698756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:19 Heat of formation + Delta-G solvation = -79.527236 kcal Electronic energy + Delta-G solvation = -14659.826987 eV Core-core repulsion = 12297.658318 eV Total energy + Delta-G solvation = -2362.168669 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.47485 -37.84900 -37.03817 -34.54048 -31.52759 -30.91842 -28.68841 -26.17967 -24.42707 -22.39397 -21.69029 -19.73004 -18.84161 -18.17806 -17.50615 -16.30280 -15.92225 -15.54358 -15.17020 -14.64170 -14.59583 -14.07335 -13.94642 -13.55085 -13.22583 -13.17591 -12.93111 -12.38929 -12.19639 -12.03597 -11.70603 -11.62177 -11.51007 -10.98495 -10.91092 -10.76558 -10.30649 -9.94646 -8.26142 -6.23670 1.29874 1.33563 1.44721 1.67847 2.36789 2.55839 3.10756 3.55576 3.72316 3.92812 4.28410 4.36058 4.42627 4.51037 4.61946 4.80159 4.86579 5.01561 5.07242 5.10581 5.18060 5.29026 5.32772 5.50888 5.60477 5.74429 5.76306 5.78643 6.04465 6.14917 6.35593 6.82316 7.38010 7.40742 8.90801 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.010639 C = 0.009144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.170361 B = 2631.128795 C = 3061.293135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.050 4.050 4 H 0.040 0.960 5 C -0.023 4.023 6 C -0.504 4.504 7 H 0.036 0.964 8 C 0.004 3.996 9 N -0.954 5.954 10 Si 0.938 3.062 11 H -0.282 1.282 12 H -0.279 1.279 13 H -0.251 1.251 14 C -0.120 4.120 15 H 0.113 0.887 16 C -0.121 4.121 17 C 0.101 3.899 18 N -0.729 5.729 19 C 0.504 3.496 20 O -0.578 6.578 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.029 0.971 24 H 0.036 0.964 25 H 0.085 0.915 26 H 0.019 0.981 27 H 0.022 0.978 28 H 0.263 0.737 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.674 -0.347 21.194 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.139 4.139 3 C -0.069 4.069 4 H 0.058 0.942 5 C -0.060 4.060 6 C -0.543 4.543 7 H 0.054 0.946 8 C -0.191 4.191 9 N -0.596 5.596 10 Si 0.763 3.237 11 H -0.208 1.208 12 H -0.205 1.205 13 H -0.175 1.175 14 C -0.141 4.141 15 H 0.130 0.870 16 C -0.158 4.158 17 C -0.022 4.022 18 N -0.384 5.384 19 C 0.291 3.709 20 O -0.458 6.458 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.139 0.861 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.688 -0.061 20.532 20.860 hybrid contribution 0.068 1.096 -1.005 1.489 sum -3.620 1.035 19.526 19.886 Atomic orbital electron populations 1.21797 0.95545 1.01693 1.01369 1.21366 0.96638 0.94677 1.01211 1.20750 0.98052 0.95641 0.92497 0.94171 1.19847 0.96056 0.96804 0.93325 1.21472 1.23207 1.18494 0.91099 0.94550 1.25824 0.98563 0.98853 0.95875 1.70054 1.46328 1.44767 0.98460 0.85835 0.80273 0.79639 0.77917 1.20843 1.20495 1.17504 1.22101 1.02273 0.92073 0.97671 0.86967 1.22782 1.03794 0.97465 0.91794 1.22354 1.03661 0.83783 0.92352 1.46308 1.62586 1.19916 1.09559 1.21509 0.76948 0.89925 0.82546 1.90703 1.58320 1.54526 1.42233 0.91833 0.90806 0.95166 0.94514 0.89662 0.96291 0.95978 0.92850 0.89811 0.86128 0.87752 0.88722 0.74844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.22 71.98 0.66 -3.82 16 2 C -0.10 -3.46 5.28 30.60 0.16 -3.30 16 3 C -0.05 -1.98 1.58 -10.79 -0.02 -1.99 16 4 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 5 C -0.02 -1.19 3.18 29.85 0.10 -1.09 16 6 C -0.50 -30.84 8.85 25.60 0.23 -30.61 16 7 H 0.04 2.39 7.43 -2.91 -0.02 2.37 16 8 C 0.00 0.28 5.47 84.65 0.46 0.74 16 9 N -0.95 -63.14 13.96 21.45 0.30 -62.85 16 10 Si 0.94 49.54 27.57 68.60 1.89 51.43 16 11 H -0.28 -15.04 7.11 99.48 0.71 -14.33 16 12 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 13 H -0.25 -12.55 6.41 99.48 0.64 -11.92 16 14 C -0.12 -3.52 2.02 -10.80 -0.02 -3.54 16 15 H 0.11 3.12 6.56 -2.39 -0.02 3.11 16 16 C -0.12 -2.06 5.60 31.65 0.18 -1.89 16 17 C 0.10 1.34 7.78 86.83 0.68 2.02 16 18 N -0.73 -16.34 6.24 -459.80 -2.87 -19.21 16 19 C 0.50 17.29 7.84 87.90 0.69 17.98 16 20 O -0.58 -26.91 15.33 -3.01 -0.05 -26.96 16 21 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 22 H 0.07 1.78 6.35 -2.39 -0.02 1.77 16 23 H 0.03 1.13 6.48 -2.39 -0.02 1.11 16 24 H 0.04 1.54 6.97 -2.39 -0.02 1.52 16 25 H 0.08 2.17 7.19 -2.39 -0.02 2.16 16 26 H 0.02 0.96 5.01 -2.39 -0.01 0.95 16 27 H 0.02 1.25 5.13 -2.38 -0.01 1.23 16 28 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 29 H 0.08 1.47 7.76 -2.39 -0.02 1.45 16 30 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.41 7.89 8.96 -92.71 -0.83 7.06 16 Total: -1.00 -80.74 257.41 2.60 -78.15 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.21 Total: 4.94 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 3.11 Total: -25.51 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -2.57 Total: -82.05 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.05 Total: -26.96 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 1.89 Total: 51.43 kcal Total: -80.74 2.60 -78.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260698756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.379 kcal (2) G-P(sol) polarization free energy of solvation -80.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds