Wall clock time and date at job start Mon Mar 30 2020 03:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46455 * 2 1 4 4 H 1.09007 * 109.46647 * 176.00495 * 3 2 1 5 5 C 1.53001 * 109.47104 * 295.99945 * 3 2 1 6 6 C 1.50706 * 109.47254 * 295.37962 * 5 3 2 7 7 H 1.08000 * 119.99600 * 354.91223 * 6 5 3 8 8 C 1.37868 * 120.00012 * 174.91547 * 6 5 3 9 9 N 1.31520 * 120.00222 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00233 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47136 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47281 * 119.99822 * 10 8 6 13 13 H 1.48504 * 109.47275 * 239.99881 * 10 8 6 14 14 C 1.52993 * 109.47555 * 56.00216 * 3 2 1 15 15 H 1.08995 * 110.43248 * 298.91270 * 14 3 2 16 16 C 1.54627 * 110.48864 * 176.22463 * 14 3 2 17 17 C 1.54483 * 101.76472 * 266.12245 * 16 14 3 18 18 N 1.46759 * 105.47091 * 334.57954 * 17 16 14 19 19 C 1.34416 * 111.30374 * 17.02484 * 18 17 16 20 20 O 1.21281 * 124.94069 * 179.63137 * 19 18 17 21 21 H 1.09005 * 109.46452 * 178.22073 * 1 2 3 22 22 H 1.08996 * 109.47161 * 298.21542 * 1 2 3 23 23 H 1.08998 * 109.47355 * 58.22403 * 1 2 3 24 24 H 1.08998 * 109.47179 * 240.00277 * 2 1 3 25 25 H 1.08997 * 109.47088 * 120.00014 * 2 1 3 26 26 H 1.08996 * 109.47270 * 55.37924 * 5 3 2 27 27 H 1.09002 * 109.46828 * 175.38395 * 5 3 2 28 28 H 0.96994 * 120.00438 * 180.02562 * 9 8 6 29 29 H 1.08996 * 110.96718 * 24.23729 * 16 14 3 30 30 H 1.08999 * 110.97036 * 147.99968 * 16 14 3 31 31 H 1.09001 * 110.24409 * 215.58490 * 17 16 14 32 32 H 1.08992 * 110.32054 * 93.62111 * 17 16 14 33 33 H 0.97002 * 124.34945 * 196.99217 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1276 1.4434 0.0716 5 6 1.6136 2.1341 -1.2965 6 6 2.2863 1.4650 -2.4674 7 1 3.0136 0.6847 -2.2986 8 6 1.9732 1.8491 -3.7540 9 7 1.0872 2.7990 -3.9595 10 14 2.8064 1.0193 -5.2054 11 1 3.7554 -0.0097 -4.7094 12 1 1.7800 0.3743 -6.0630 13 1 3.5468 2.0340 -5.9976 14 6 1.4494 2.1923 1.1958 15 1 0.3618 2.2174 1.1298 16 6 2.0232 3.6261 1.2727 17 6 3.2120 3.4381 2.2411 18 7 2.8695 2.2687 3.0590 19 6 1.8864 1.5478 2.4929 20 8 1.4172 0.5294 2.9552 21 1 -0.3632 -1.0273 -0.0319 22 1 -0.3633 0.4858 0.9055 23 1 -0.3634 0.5411 -0.8736 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.5319 2.0611 -1.4086 27 1 1.9053 3.1838 -1.2612 28 1 0.8666 3.0690 -4.8647 29 1 2.3665 3.9617 0.2942 30 1 1.2894 4.3183 1.6855 31 1 3.3271 4.3192 2.8724 32 1 4.1294 3.2523 1.6827 33 1 3.2980 2.0444 3.8999 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260698759.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:22 Heat of formation + Delta-G solvation = -60.417063 kcal Electronic energy + Delta-G solvation = -14608.271303 eV Core-core repulsion = 12246.931314 eV Total energy + Delta-G solvation = -2361.339990 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.23870 -36.32912 -35.46985 -32.45311 -30.52556 -28.40692 -27.25751 -24.55711 -22.84406 -21.47783 -20.23250 -18.31992 -17.12128 -16.24621 -15.58396 -14.80997 -14.46391 -13.93348 -13.67711 -13.28784 -13.06152 -12.69851 -12.27855 -11.89339 -11.56000 -11.24938 -11.11473 -10.93459 -10.63401 -10.49383 -10.03550 -9.88086 -9.75448 -9.51374 -8.96846 -8.86980 -8.78794 -8.32206 -5.99571 -3.99966 2.98484 3.31117 3.39430 3.43296 3.63084 4.46758 4.77924 4.87855 5.13538 5.37028 5.40397 5.64736 5.74279 5.95042 6.02205 6.16874 6.19933 6.30316 6.44680 6.70779 6.73535 6.86901 6.97738 7.08611 7.17613 7.23035 7.30827 7.69661 7.83167 8.01135 8.43715 8.58762 9.05879 9.63273 11.11597 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.040379 B = 0.008909 C = 0.008144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.267938 B = 3142.204699 C = 3437.310023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.063 4.063 4 H 0.056 0.944 5 C 0.027 3.973 6 C -0.511 4.511 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.285 1.285 14 C -0.118 4.118 15 H 0.103 0.897 16 C -0.136 4.136 17 C 0.103 3.897 18 N -0.740 5.740 19 C 0.524 3.476 20 O -0.537 6.537 21 H 0.037 0.963 22 H 0.046 0.954 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.028 0.972 27 H 0.016 0.984 28 H 0.259 0.741 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 2.227 10.120 10.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.082 4.082 4 H 0.074 0.926 5 C -0.010 4.010 6 C -0.550 4.550 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.140 4.140 15 H 0.121 0.879 16 C -0.173 4.173 17 C -0.021 4.021 18 N -0.395 5.395 19 C 0.311 3.689 20 O -0.414 6.414 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.474 1.814 10.108 10.563 hybrid contribution 0.704 -0.396 -0.509 0.955 sum 3.179 1.418 9.599 10.210 Atomic orbital electron populations 1.21767 0.96635 1.00291 1.01539 1.21423 0.96000 0.96482 1.00820 1.21102 0.98445 0.94784 0.93827 0.92561 1.19255 0.97535 0.94965 0.89225 1.21238 1.23180 1.19723 0.90822 0.92667 1.24976 0.95266 0.95211 0.98902 1.69961 1.32967 1.29622 1.20946 0.86614 0.79463 0.79472 0.82928 1.19808 1.21103 1.21155 1.22190 1.02816 0.95163 0.93819 0.87933 1.22792 0.96784 0.96630 1.01113 1.22060 0.98980 0.87692 0.93408 1.46275 1.39620 1.28415 1.25225 1.21187 0.78565 0.83033 0.86068 1.90684 1.58598 1.23946 1.68151 0.94382 0.93520 0.91657 0.91187 0.93711 0.95363 0.96568 0.93153 0.87711 0.90754 0.90981 0.91115 0.76069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.19 37.16 0.34 -2.49 16 2 C -0.11 -2.24 5.16 -26.73 -0.14 -2.38 16 3 C -0.06 -1.25 1.68 -90.62 -0.15 -1.40 16 4 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 5 C 0.03 0.64 4.17 -27.88 -0.12 0.53 16 6 C -0.51 -13.75 8.24 -34.44 -0.28 -14.03 16 7 H 0.06 1.48 7.25 -52.49 -0.38 1.09 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -25.93 13.29 55.43 0.74 -25.20 16 10 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 C -0.12 -2.03 1.97 -90.63 -0.18 -2.20 16 15 H 0.10 1.81 6.53 -51.93 -0.34 1.47 16 16 C -0.14 -1.89 6.53 -25.10 -0.16 -2.05 16 17 C 0.10 1.19 7.78 -3.12 -0.02 1.17 16 18 N -0.74 -9.83 6.24 -59.21 -0.37 -10.20 16 19 C 0.52 9.01 7.20 -10.86 -0.08 8.93 16 20 O -0.54 -10.96 16.73 5.56 0.09 -10.86 16 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.87 6.47 -51.93 -0.34 0.54 16 23 H 0.06 1.37 6.35 -51.93 -0.33 1.04 16 24 H 0.07 1.52 6.93 -51.93 -0.36 1.16 16 25 H 0.04 0.91 6.68 -51.93 -0.35 0.56 16 26 H 0.03 0.73 6.29 -51.93 -0.33 0.40 16 27 H 0.02 0.40 6.21 -51.93 -0.32 0.07 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.10 1.60 6.05 -51.93 -0.31 1.28 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.40 4.45 8.96 -40.82 -0.37 4.08 16 LS Contribution 261.25 15.07 3.94 3.94 Total: -1.00 -30.66 261.25 -6.18 -36.85 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -4.67 Total: 1.64 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -0.89 Total: -12.44 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.37 Total: -35.40 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.66 -6.18 -36.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260698759.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.571 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds