Wall clock time and date at job start Mon Mar 30 2020 03:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46455 * 2 1 4 4 H 1.09007 * 109.46647 * 176.00495 * 3 2 1 5 5 C 1.53001 * 109.47104 * 295.99945 * 3 2 1 6 6 C 1.50706 * 109.47254 * 295.37962 * 5 3 2 7 7 H 1.08000 * 119.99600 * 354.91223 * 6 5 3 8 8 C 1.37868 * 120.00012 * 174.91547 * 6 5 3 9 9 N 1.31520 * 120.00222 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00233 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47136 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47281 * 119.99822 * 10 8 6 13 13 H 1.48504 * 109.47275 * 239.99881 * 10 8 6 14 14 C 1.52993 * 109.47555 * 56.00216 * 3 2 1 15 15 H 1.08995 * 110.43248 * 298.91270 * 14 3 2 16 16 C 1.54627 * 110.48864 * 176.22463 * 14 3 2 17 17 C 1.54483 * 101.76472 * 266.12245 * 16 14 3 18 18 N 1.46759 * 105.47091 * 334.57954 * 17 16 14 19 19 C 1.34416 * 111.30374 * 17.02484 * 18 17 16 20 20 O 1.21281 * 124.94069 * 179.63137 * 19 18 17 21 21 H 1.09005 * 109.46452 * 178.22073 * 1 2 3 22 22 H 1.08996 * 109.47161 * 298.21542 * 1 2 3 23 23 H 1.08998 * 109.47355 * 58.22403 * 1 2 3 24 24 H 1.08998 * 109.47179 * 240.00277 * 2 1 3 25 25 H 1.08997 * 109.47088 * 120.00014 * 2 1 3 26 26 H 1.08996 * 109.47270 * 55.37924 * 5 3 2 27 27 H 1.09002 * 109.46828 * 175.38395 * 5 3 2 28 28 H 0.96994 * 120.00438 * 180.02562 * 9 8 6 29 29 H 1.08996 * 110.96718 * 24.23729 * 16 14 3 30 30 H 1.08999 * 110.97036 * 147.99968 * 16 14 3 31 31 H 1.09001 * 110.24409 * 215.58490 * 17 16 14 32 32 H 1.08992 * 110.32054 * 93.62111 * 17 16 14 33 33 H 0.97002 * 124.34945 * 196.99217 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1276 1.4434 0.0716 5 6 1.6136 2.1341 -1.2965 6 6 2.2863 1.4650 -2.4674 7 1 3.0136 0.6847 -2.2986 8 6 1.9732 1.8491 -3.7540 9 7 1.0872 2.7990 -3.9595 10 14 2.8064 1.0193 -5.2054 11 1 3.7554 -0.0097 -4.7094 12 1 1.7800 0.3743 -6.0630 13 1 3.5468 2.0340 -5.9976 14 6 1.4494 2.1923 1.1958 15 1 0.3618 2.2174 1.1298 16 6 2.0232 3.6261 1.2727 17 6 3.2120 3.4381 2.2411 18 7 2.8695 2.2687 3.0590 19 6 1.8864 1.5478 2.4929 20 8 1.4172 0.5294 2.9552 21 1 -0.3632 -1.0273 -0.0319 22 1 -0.3633 0.4858 0.9055 23 1 -0.3634 0.5411 -0.8736 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.5319 2.0611 -1.4086 27 1 1.9053 3.1838 -1.2612 28 1 0.8666 3.0690 -4.8647 29 1 2.3665 3.9617 0.2942 30 1 1.2894 4.3183 1.6855 31 1 3.3271 4.3192 2.8724 32 1 4.1294 3.2523 1.6827 33 1 3.2980 2.0444 3.8999 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260698759.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:21 Heat of formation + Delta-G solvation = -81.083429 kcal Electronic energy + Delta-G solvation = -14609.167464 eV Core-core repulsion = 12246.931314 eV Total energy + Delta-G solvation = -2362.236151 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.55511 -37.85383 -36.89245 -34.49582 -31.85856 -30.22479 -28.58832 -26.27771 -24.67078 -22.70179 -21.65164 -19.87289 -18.44370 -18.22555 -16.96899 -16.41002 -16.15512 -15.44081 -15.17975 -14.70639 -14.39917 -14.25510 -13.90390 -13.38224 -13.32847 -12.98637 -12.66633 -12.50843 -12.46279 -12.06850 -11.78437 -11.56808 -11.34563 -11.21715 -10.86652 -10.46723 -10.39183 -9.97555 -8.12023 -6.18187 1.40730 1.43276 1.53926 1.63396 2.45182 2.53597 3.22014 3.53291 3.69203 3.97591 4.19929 4.32531 4.36137 4.52322 4.63742 4.78462 4.84606 5.00074 5.07587 5.12652 5.18755 5.22414 5.34644 5.49507 5.53695 5.68845 5.86596 5.93426 6.00102 6.09400 6.36534 6.96583 7.35211 7.48454 8.99273 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.040379 B = 0.008909 C = 0.008144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.267938 B = 3142.204699 C = 3437.310023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C -0.052 4.052 4 H 0.055 0.945 5 C 0.036 3.964 6 C -0.523 4.523 7 H 0.053 0.947 8 C 0.005 3.995 9 N -0.929 5.929 10 Si 0.949 3.051 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.279 1.279 14 C -0.121 4.121 15 H 0.093 0.907 16 C -0.133 4.133 17 C 0.105 3.895 18 N -0.722 5.722 19 C 0.521 3.479 20 O -0.574 6.574 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.004 0.996 27 H 0.009 0.991 28 H 0.260 0.740 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.996 2.656 10.981 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C -0.071 4.071 4 H 0.073 0.927 5 C -0.001 4.001 6 C -0.561 4.561 7 H 0.071 0.929 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.775 3.225 11 H -0.191 1.191 12 H -0.210 1.210 13 H -0.205 1.205 14 C -0.142 4.142 15 H 0.111 0.889 16 C -0.171 4.171 17 C -0.018 4.018 18 N -0.377 5.377 19 C 0.308 3.692 20 O -0.454 6.454 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.640 2.267 10.988 11.795 hybrid contribution 0.358 -0.502 -0.758 0.977 sum 3.998 1.765 10.230 11.125 Atomic orbital electron populations 1.21674 0.96045 1.00896 1.00829 1.21373 0.96514 0.96632 0.99949 1.20863 0.98355 0.94493 0.93381 0.92655 1.19092 0.95690 0.94731 0.90547 1.21601 1.22998 1.19515 0.92012 0.92921 1.25746 0.95958 0.95876 1.01634 1.70068 1.34331 1.30996 1.21566 0.85633 0.78522 0.78643 0.79668 1.19138 1.20983 1.20500 1.22078 1.02338 0.97020 0.92805 0.88867 1.22782 0.98200 0.94721 1.01363 1.22233 0.97808 0.88356 0.93410 1.46182 1.38012 1.28003 1.25503 1.21093 0.79275 0.82759 0.86050 1.90663 1.60134 1.25576 1.69056 0.93049 0.92851 0.93698 0.93016 0.93380 0.97758 0.97281 0.93067 0.89190 0.88624 0.86873 0.90511 0.74384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 9.19 71.98 0.66 -4.73 16 2 C -0.11 -4.39 5.16 30.60 0.16 -4.24 16 3 C -0.05 -2.07 1.68 -10.80 -0.02 -2.09 16 4 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 5 C 0.04 1.76 4.17 29.85 0.12 1.89 16 6 C -0.52 -28.38 8.24 25.60 0.21 -28.17 16 7 H 0.05 2.82 7.25 -2.91 -0.02 2.80 16 8 C 0.01 0.30 5.46 84.65 0.46 0.77 16 9 N -0.93 -54.40 13.29 21.44 0.28 -54.11 16 10 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 14 C -0.12 -4.03 1.97 -10.80 -0.02 -4.05 16 15 H 0.09 3.27 6.53 -2.39 -0.02 3.26 16 16 C -0.13 -3.43 6.53 31.65 0.21 -3.23 16 17 C 0.11 2.07 7.78 86.83 0.68 2.74 16 18 N -0.72 -17.07 6.24 -459.82 -2.87 -19.94 16 19 C 0.52 17.10 7.20 87.90 0.63 17.74 16 20 O -0.57 -22.89 16.73 -3.03 -0.05 -22.94 16 21 H 0.05 1.83 8.14 -2.38 -0.02 1.82 16 22 H 0.05 2.00 6.47 -2.39 -0.02 1.99 16 23 H 0.04 1.92 6.35 -2.39 -0.02 1.91 16 24 H 0.05 2.27 6.93 -2.39 -0.02 2.25 16 25 H 0.05 1.94 6.68 -2.39 -0.02 1.92 16 26 H 0.00 0.22 6.29 -2.39 -0.02 0.21 16 27 H 0.01 0.45 6.21 -2.39 -0.01 0.44 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.09 2.64 6.05 -2.39 -0.01 2.62 16 30 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.42 7.85 8.96 -92.71 -0.83 7.02 16 Total: -1.00 -65.64 261.25 2.76 -62.87 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.28 Total: 11.74 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 3.09 Total: -23.37 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -2.58 Total: -74.05 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -65.64 2.76 -62.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260698759.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.210 kcal (2) G-P(sol) polarization free energy of solvation -65.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds