Wall clock time and date at job start Mon Mar 30 2020 03:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47060 * 2 1 4 4 H 1.09000 * 109.46812 * 182.65286 * 3 2 1 5 5 C 1.53001 * 109.47002 * 62.65315 * 3 2 1 6 6 C 1.50704 * 109.47350 * 65.00124 * 5 3 2 7 7 H 1.08001 * 119.99826 * 359.97438 * 6 5 3 8 8 C 1.37877 * 120.00014 * 179.97438 * 6 5 3 9 9 N 1.31512 * 120.00192 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99621 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47169 * 180.02562 * 10 8 6 12 12 H 1.48497 * 109.47639 * 299.99996 * 10 8 6 13 13 H 1.48505 * 109.47235 * 60.00147 * 10 8 6 14 14 C 1.52996 * 109.47200 * 302.65356 * 3 2 1 15 15 H 1.08997 * 110.43872 * 62.79317 * 14 3 2 16 16 C 1.54627 * 110.48586 * 185.33779 * 14 3 2 17 17 C 1.54483 * 101.76527 * 93.87872 * 16 14 3 18 18 N 1.46761 * 105.47249 * 25.41479 * 17 16 14 19 19 C 1.34423 * 111.30237 * 342.98754 * 18 17 16 20 20 O 1.21281 * 124.93910 * 180.44428 * 19 18 17 21 21 H 1.09005 * 109.47182 * 300.22034 * 1 2 3 22 22 H 1.09007 * 109.47026 * 60.22027 * 1 2 3 23 23 H 1.08996 * 109.47230 * 180.21710 * 1 2 3 24 24 H 1.08996 * 109.47116 * 240.00022 * 2 1 3 25 25 H 1.09002 * 109.46562 * 119.99658 * 2 1 3 26 26 H 1.08994 * 109.47115 * 305.00026 * 5 3 2 27 27 H 1.08997 * 109.46963 * 184.99842 * 5 3 2 28 28 H 0.96996 * 120.00312 * 180.02562 * 9 8 6 29 29 H 1.08997 * 110.96782 * 211.99800 * 16 14 3 30 30 H 1.08999 * 110.96680 * 335.76011 * 16 14 3 31 31 H 1.09005 * 110.24461 * 144.41285 * 17 16 14 32 32 H 1.08996 * 110.24496 * 266.41872 * 17 16 14 33 33 H 0.96998 * 124.35187 * 162.97799 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4429 -0.0476 5 6 1.5852 2.1442 1.2813 6 6 2.2389 1.4903 2.4714 7 1 2.9111 0.6572 2.3281 8 6 1.9788 1.9555 3.7429 9 7 1.1606 2.9703 3.9173 10 14 2.7885 1.1445 5.2180 11 1 2.3472 1.8256 6.4616 12 1 2.3972 -0.2870 5.2727 13 1 4.2645 1.2496 5.0924 14 6 1.4762 2.1828 -1.2145 15 1 0.3890 2.2348 -1.1576 16 6 2.0815 3.6023 -1.3120 17 6 3.2743 3.3713 -2.2661 18 7 2.9138 2.1947 -3.0658 19 6 1.9102 1.5056 -2.4957 20 8 1.4241 0.4885 -2.9431 21 1 -0.3634 0.5173 0.8880 22 1 -0.3633 0.5104 -0.8920 23 1 -0.3633 -1.0276 0.0039 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 0.5020 2.0662 1.3734 27 1 1.8718 3.1951 1.2413 28 1 0.9778 3.2978 4.8118 29 1 1.3665 4.3025 -1.7438 30 1 2.4236 3.9483 -0.3366 31 1 3.4139 4.2381 -2.9122 32 1 4.1818 3.1754 -1.6950 33 1 3.3442 1.9462 -3.8988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260698761.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:24 Heat of formation + Delta-G solvation = -60.478000 kcal Electronic energy + Delta-G solvation = -14606.081342 eV Core-core repulsion = 12244.738710 eV Total energy + Delta-G solvation = -2361.342632 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.24083 -36.32087 -35.47812 -32.45063 -30.53312 -28.39319 -27.25756 -24.55501 -22.84725 -21.47527 -20.23244 -18.32738 -17.12107 -16.23333 -15.58795 -14.80785 -14.46166 -13.95281 -13.67381 -13.29425 -13.05275 -12.68337 -12.26408 -11.89453 -11.56700 -11.23917 -11.11311 -10.92720 -10.68216 -10.48902 -10.03039 -9.87084 -9.76783 -9.52250 -8.97900 -8.87120 -8.78140 -8.31402 -5.99041 -3.99631 2.98391 3.33826 3.38525 3.41326 3.63054 4.46965 4.77986 4.87694 5.13618 5.37292 5.40378 5.64666 5.74138 5.94680 6.02198 6.16844 6.19801 6.30464 6.44616 6.70373 6.73299 6.87068 6.97086 7.08495 7.17246 7.21597 7.30805 7.69919 7.83287 8.01691 8.44140 8.58741 9.05714 9.63522 11.12092 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.040116 B = 0.008924 C = 0.008132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.807032 B = 3136.862562 C = 3442.308123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.063 4.063 4 H 0.057 0.943 5 C 0.028 3.972 6 C -0.513 4.513 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.888 3.112 11 H -0.288 1.288 12 H -0.278 1.278 13 H -0.278 1.278 14 C -0.118 4.118 15 H 0.102 0.898 16 C -0.135 4.135 17 C 0.103 3.897 18 N -0.740 5.740 19 C 0.524 3.476 20 O -0.537 6.537 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.024 0.976 27 H 0.019 0.981 28 H 0.260 0.740 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 1.885 -10.128 10.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.082 4.082 4 H 0.075 0.925 5 C -0.009 4.009 6 C -0.551 4.551 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.716 3.284 11 H -0.214 1.214 12 H -0.203 1.203 13 H -0.204 1.204 14 C -0.140 4.140 15 H 0.120 0.880 16 C -0.173 4.173 17 C -0.021 4.021 18 N -0.395 5.395 19 C 0.312 3.688 20 O -0.414 6.414 21 H 0.083 0.917 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.540 1.496 -10.106 10.527 hybrid contribution 0.715 -0.407 0.515 0.970 sum 3.255 1.089 -9.591 10.187 Atomic orbital electron populations 1.21758 0.96600 1.00203 1.01609 1.21433 0.96060 0.96511 1.00789 1.21109 0.98677 0.94809 0.93580 0.92477 1.19232 0.97144 0.95140 0.89343 1.21176 1.26897 1.15939 0.91138 0.92744 1.24974 0.95336 0.95109 0.98897 1.69939 1.35916 1.25509 1.22162 0.86726 0.79776 0.79660 0.82239 1.21393 1.20316 1.20363 1.22183 1.02720 0.95081 0.93984 0.87966 1.22784 0.96644 0.96702 1.01151 1.22064 0.98852 0.87482 0.93749 1.46276 1.38114 1.28863 1.26284 1.21179 0.78728 0.83213 0.85713 1.90684 1.58527 1.23966 1.68181 0.91667 0.93508 0.94412 0.93637 0.91316 0.95744 0.96270 0.93038 0.90750 0.87755 0.90962 0.91107 0.76067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.22 37.16 0.34 -2.47 16 2 C -0.11 -2.25 5.14 -26.73 -0.14 -2.39 16 3 C -0.06 -1.26 1.67 -90.62 -0.15 -1.41 16 4 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 5 C 0.03 0.67 4.17 -27.88 -0.12 0.56 16 6 C -0.51 -13.82 8.37 -34.44 -0.29 -14.11 16 7 H 0.05 1.45 7.06 -52.49 -0.37 1.08 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 10 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C -0.12 -2.02 1.96 -90.63 -0.18 -2.20 16 15 H 0.10 1.80 6.61 -51.93 -0.34 1.46 16 16 C -0.14 -1.88 6.53 -25.10 -0.16 -2.05 16 17 C 0.10 1.19 7.78 -3.12 -0.02 1.17 16 18 N -0.74 -9.83 6.24 -59.20 -0.37 -10.20 16 19 C 0.52 9.00 7.16 -10.86 -0.08 8.93 16 20 O -0.54 -10.93 16.67 5.56 0.09 -10.84 16 21 H 0.06 1.36 6.38 -51.93 -0.33 1.03 16 22 H 0.05 0.88 6.46 -51.93 -0.34 0.54 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.92 6.56 -51.93 -0.34 0.58 16 25 H 0.07 1.48 6.88 -51.93 -0.36 1.13 16 26 H 0.02 0.63 6.25 -51.93 -0.32 0.30 16 27 H 0.02 0.47 6.30 -51.93 -0.33 0.15 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.59 6.16 -51.93 -0.32 1.27 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.40 4.44 8.96 -40.82 -0.37 4.08 16 LS Contribution 261.16 15.07 3.94 3.94 Total: -1.00 -30.63 261.16 -6.18 -36.81 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.66 Total: 1.68 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.89 Total: -12.46 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.37 Total: -35.43 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.63 -6.18 -36.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260698761.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.665 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds