Wall clock time and date at job start Mon Mar 30 2020 03:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47060 * 2 1 4 4 H 1.09000 * 109.46812 * 182.65286 * 3 2 1 5 5 C 1.53001 * 109.47002 * 62.65315 * 3 2 1 6 6 C 1.50704 * 109.47350 * 65.00124 * 5 3 2 7 7 H 1.08001 * 119.99826 * 359.97438 * 6 5 3 8 8 C 1.37877 * 120.00014 * 179.97438 * 6 5 3 9 9 N 1.31512 * 120.00192 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99621 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47169 * 180.02562 * 10 8 6 12 12 H 1.48497 * 109.47639 * 299.99996 * 10 8 6 13 13 H 1.48505 * 109.47235 * 60.00147 * 10 8 6 14 14 C 1.52996 * 109.47200 * 302.65356 * 3 2 1 15 15 H 1.08997 * 110.43872 * 62.79317 * 14 3 2 16 16 C 1.54627 * 110.48586 * 185.33779 * 14 3 2 17 17 C 1.54483 * 101.76527 * 93.87872 * 16 14 3 18 18 N 1.46761 * 105.47249 * 25.41479 * 17 16 14 19 19 C 1.34423 * 111.30237 * 342.98754 * 18 17 16 20 20 O 1.21281 * 124.93910 * 180.44428 * 19 18 17 21 21 H 1.09005 * 109.47182 * 300.22034 * 1 2 3 22 22 H 1.09007 * 109.47026 * 60.22027 * 1 2 3 23 23 H 1.08996 * 109.47230 * 180.21710 * 1 2 3 24 24 H 1.08996 * 109.47116 * 240.00022 * 2 1 3 25 25 H 1.09002 * 109.46562 * 119.99658 * 2 1 3 26 26 H 1.08994 * 109.47115 * 305.00026 * 5 3 2 27 27 H 1.08997 * 109.46963 * 184.99842 * 5 3 2 28 28 H 0.96996 * 120.00312 * 180.02562 * 9 8 6 29 29 H 1.08997 * 110.96782 * 211.99800 * 16 14 3 30 30 H 1.08999 * 110.96680 * 335.76011 * 16 14 3 31 31 H 1.09005 * 110.24461 * 144.41285 * 17 16 14 32 32 H 1.08996 * 110.24496 * 266.41872 * 17 16 14 33 33 H 0.96998 * 124.35187 * 162.97799 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4429 -0.0476 5 6 1.5852 2.1442 1.2813 6 6 2.2389 1.4903 2.4714 7 1 2.9111 0.6572 2.3281 8 6 1.9788 1.9555 3.7429 9 7 1.1606 2.9703 3.9173 10 14 2.7885 1.1445 5.2180 11 1 2.3472 1.8256 6.4616 12 1 2.3972 -0.2870 5.2727 13 1 4.2645 1.2496 5.0924 14 6 1.4762 2.1828 -1.2145 15 1 0.3890 2.2348 -1.1576 16 6 2.0815 3.6023 -1.3120 17 6 3.2743 3.3713 -2.2661 18 7 2.9138 2.1947 -3.0658 19 6 1.9102 1.5056 -2.4957 20 8 1.4241 0.4885 -2.9431 21 1 -0.3634 0.5173 0.8880 22 1 -0.3633 0.5104 -0.8920 23 1 -0.3633 -1.0276 0.0039 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 0.5020 2.0662 1.3734 27 1 1.8718 3.1951 1.2413 28 1 0.9778 3.2978 4.8118 29 1 1.3665 4.3025 -1.7438 30 1 2.4236 3.9483 -0.3366 31 1 3.4139 4.2381 -2.9122 32 1 4.1818 3.1754 -1.6950 33 1 3.3442 1.9462 -3.8988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260698761.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:24 Heat of formation + Delta-G solvation = -81.116015 kcal Electronic energy + Delta-G solvation = -14606.976273 eV Core-core repulsion = 12244.738710 eV Total energy + Delta-G solvation = -2362.237564 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.55753 -37.84450 -36.90126 -34.49578 -31.86431 -30.21171 -28.59170 -26.27191 -24.67818 -22.69590 -21.65455 -19.87922 -18.43967 -18.21644 -16.98365 -16.40764 -16.13953 -15.46474 -15.17220 -14.70218 -14.39745 -14.24129 -13.89584 -13.38871 -13.32771 -12.96061 -12.65159 -12.51672 -12.50733 -12.08487 -11.74099 -11.58943 -11.36216 -11.22301 -10.87156 -10.45566 -10.39335 -9.97440 -8.11704 -6.18191 1.42862 1.44199 1.51430 1.63345 2.45415 2.53543 3.22237 3.53113 3.68889 3.97413 4.19690 4.32534 4.36002 4.52256 4.63712 4.78156 4.84555 5.00032 5.07237 5.13026 5.18243 5.22348 5.34077 5.49732 5.52601 5.68513 5.86242 5.93454 6.00160 6.09429 6.36695 6.96219 7.35251 7.48474 8.99244 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.040116 B = 0.008924 C = 0.008132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.807032 B = 3136.862562 C = 3442.308123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C -0.052 4.052 4 H 0.056 0.944 5 C 0.038 3.962 6 C -0.526 4.526 7 H 0.053 0.947 8 C 0.006 3.994 9 N -0.929 5.929 10 Si 0.949 3.051 11 H -0.285 1.285 12 H -0.274 1.274 13 H -0.268 1.268 14 C -0.121 4.121 15 H 0.093 0.907 16 C -0.133 4.133 17 C 0.105 3.895 18 N -0.722 5.722 19 C 0.522 3.478 20 O -0.574 6.574 21 H 0.044 0.956 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.001 0.999 27 H 0.010 0.990 28 H 0.261 0.739 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.099 2.233 -10.983 11.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C -0.071 4.071 4 H 0.074 0.926 5 C 0.001 3.999 6 C -0.564 4.564 7 H 0.071 0.929 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.775 3.225 11 H -0.211 1.211 12 H -0.200 1.200 13 H -0.194 1.194 14 C -0.142 4.142 15 H 0.111 0.889 16 C -0.170 4.170 17 C -0.018 4.018 18 N -0.377 5.377 19 C 0.309 3.691 20 O -0.454 6.454 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.020 0.980 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.739 1.864 -10.981 11.749 hybrid contribution 0.356 -0.489 0.760 0.972 sum 4.094 1.375 -10.221 11.096 Atomic orbital electron populations 1.21669 0.96041 1.00868 1.00837 1.21384 0.96546 0.96618 0.99973 1.20868 0.98511 0.94515 0.93204 0.92585 1.19067 0.95407 0.94810 0.90648 1.21561 1.26693 1.15812 0.92355 0.92862 1.25752 0.95979 0.95709 1.01741 1.70053 1.37279 1.26869 1.22741 0.85743 0.79209 0.78654 0.78886 1.21098 1.19985 1.19352 1.22071 1.02322 0.96905 0.92934 0.88900 1.22773 0.97995 0.94888 1.01378 1.22235 0.97643 0.88079 0.93843 1.46181 1.36521 1.28499 1.26499 1.21079 0.79458 0.82901 0.85704 1.90664 1.60039 1.25570 1.69101 0.93693 0.92892 0.93047 0.93288 0.93052 0.98047 0.97213 0.93042 0.88627 0.89283 0.86856 0.90521 0.74375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 9.22 71.98 0.66 -4.71 16 2 C -0.11 -4.40 5.14 30.60 0.16 -4.24 16 3 C -0.05 -2.08 1.67 -10.79 -0.02 -2.10 16 4 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 5 C 0.04 1.83 4.17 29.85 0.12 1.96 16 6 C -0.53 -28.58 8.37 25.60 0.21 -28.37 16 7 H 0.05 2.85 7.06 -2.91 -0.02 2.82 16 8 C 0.01 0.33 5.46 84.66 0.46 0.79 16 9 N -0.93 -54.46 13.29 21.45 0.28 -54.17 16 10 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 C -0.12 -4.03 1.96 -10.80 -0.02 -4.05 16 15 H 0.09 3.26 6.61 -2.39 -0.02 3.25 16 16 C -0.13 -3.44 6.53 31.65 0.21 -3.23 16 17 C 0.11 2.07 7.78 86.83 0.68 2.75 16 18 N -0.72 -17.06 6.24 -459.80 -2.87 -19.93 16 19 C 0.52 17.10 7.16 87.90 0.63 17.73 16 20 O -0.57 -22.82 16.67 -3.03 -0.05 -22.87 16 21 H 0.04 1.92 6.38 -2.38 -0.02 1.91 16 22 H 0.05 1.99 6.46 -2.38 -0.02 1.98 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.05 1.97 6.56 -2.39 -0.02 1.95 16 25 H 0.05 2.24 6.88 -2.39 -0.02 2.22 16 26 H 0.00 0.07 6.25 -2.39 -0.01 0.05 16 27 H 0.01 0.49 6.30 -2.39 -0.02 0.47 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.09 2.63 6.16 -2.39 -0.01 2.61 16 31 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.42 7.84 8.96 -92.71 -0.83 7.01 16 Total: -1.00 -65.57 261.16 2.76 -62.81 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.28 Total: 11.94 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 3.09 Total: -23.48 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -2.58 Total: -74.10 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -65.57 2.76 -62.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260698761.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.307 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds