Wall clock time and date at job start Mon Mar 30 2020 02:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47073 * 2 1 4 4 C 1.50706 * 109.47211 * 120.00104 * 2 1 3 5 5 H 1.07999 * 119.99863 * 5.03498 * 4 2 1 6 6 C 1.37876 * 119.99840 * 185.04150 * 4 2 1 7 7 N 1.31520 * 119.99507 * 183.14061 * 6 4 2 8 8 Si 1.86796 * 120.00247 * 3.14108 * 6 4 2 9 9 H 1.48496 * 109.47100 * 87.21776 * 8 6 4 10 10 H 1.48501 * 109.47164 * 207.21754 * 8 6 4 11 11 H 1.48497 * 109.47032 * 327.21483 * 8 6 4 12 12 N 1.46494 * 109.47584 * 240.00087 * 2 1 3 13 13 C 1.45758 * 117.95019 * 244.80247 * 12 2 1 14 14 C 1.52920 * 110.49173 * 160.92221 * 13 12 2 15 15 C 1.53347 * 108.67227 * 50.74953 * 14 13 12 16 16 C 1.53071 * 108.42552 * 292.47018 * 15 14 13 17 17 C 1.33357 * 117.94761 * 64.53391 * 12 2 1 18 18 O 1.21285 * 118.24167 * 2.22699 * 17 12 2 19 19 H 1.08994 * 109.47442 * 299.99527 * 1 2 3 20 20 H 1.09000 * 109.46668 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47092 * 60.00215 * 1 2 3 22 22 H 1.09009 * 109.46944 * 68.83687 * 3 2 1 23 23 H 1.09005 * 109.47277 * 188.83313 * 3 2 1 24 24 H 1.08994 * 109.47292 * 308.83862 * 3 2 1 25 25 H 0.96997 * 119.99350 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.29757 * 281.23519 * 13 12 2 27 27 H 1.08995 * 109.30034 * 40.81385 * 13 12 2 28 28 H 1.08998 * 109.60693 * 170.51033 * 14 13 12 29 29 H 1.09007 * 109.60359 * 290.83581 * 14 13 12 30 30 H 1.08993 * 109.67228 * 52.20733 * 15 14 13 31 31 H 1.09007 * 109.67087 * 172.70032 * 15 14 13 32 32 H 1.09008 * 109.39696 * 169.03274 * 16 15 14 33 33 H 1.08994 * 109.40052 * 288.85269 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 1.3339 -1.1914 1.8993 6 6 3.3836 -0.7463 1.5024 7 7 3.8274 -1.4183 2.5422 8 14 4.5837 0.1596 0.3942 9 1 4.7205 1.5642 0.8561 10 1 5.9082 -0.5100 0.4468 11 1 4.0767 0.1446 -1.0015 12 7 2.0184 -0.6905 -1.1961 13 6 2.7630 -1.9302 -1.0131 14 6 2.7811 -2.7402 -2.3100 15 6 3.2358 -1.8256 -3.4538 16 6 2.1517 -0.7711 -3.6902 17 6 1.7492 -0.1485 -2.3844 18 8 1.1514 0.9064 -2.4119 19 1 -0.3634 0.5137 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 -0.8899 22 1 1.8112 1.9087 0.9584 23 1 3.1185 1.4466 -0.1578 24 1 1.5535 1.9999 -0.8004 25 1 4.7780 -1.4438 2.7333 26 1 3.7864 -1.6958 -0.7204 27 1 2.2906 -2.5217 -0.2290 28 1 3.4756 -3.5744 -2.2106 29 1 1.7807 -3.1200 -2.5180 30 1 4.1710 -1.3361 -3.1825 31 1 3.3793 -2.4147 -4.3597 32 1 2.5360 -0.0004 -4.3586 33 1 1.2806 -1.2429 -4.1447 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261251312.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:38 Heat of formation + Delta-G solvation = -19.037554 kcal Electronic energy + Delta-G solvation = -15549.777815 eV Core-core repulsion = 13190.232175 eV Total energy + Delta-G solvation = -2359.545639 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.02373 -35.87061 -35.31472 -32.12252 -30.51386 -28.88312 -26.46254 -25.46529 -23.59748 -21.81694 -19.98749 -17.68982 -17.16249 -15.69078 -15.14009 -14.86552 -14.59254 -13.68181 -13.53817 -13.34946 -12.89840 -12.65606 -12.30572 -12.09713 -11.53314 -11.25419 -11.04652 -10.76947 -10.58599 -10.45793 -10.32907 -10.08387 -9.96489 -9.45003 -9.07366 -8.71375 -8.36861 -7.53346 -6.29515 -4.32377 3.20848 3.30621 3.38448 3.50264 4.02178 4.26211 5.11215 5.12383 5.15372 5.19796 5.41107 5.80799 5.87620 6.03336 6.11915 6.19366 6.25114 6.29715 6.35424 6.52613 6.66023 6.71737 6.79888 6.88845 6.98162 7.15607 7.32782 7.36542 7.76362 8.27197 8.68035 8.83068 9.13169 9.33941 10.80659 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.029639 B = 0.017925 C = 0.014903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.486194 B = 1561.660506 C = 1878.389722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.249 3.751 3 C -0.160 4.160 4 C -0.520 4.520 5 H 0.083 0.917 6 C 0.082 3.918 7 N -0.882 5.882 8 Si 0.891 3.109 9 H -0.290 1.290 10 H -0.304 1.304 11 H -0.248 1.248 12 N -0.573 5.573 13 C 0.120 3.880 14 C -0.139 4.139 15 C -0.123 4.123 16 C -0.135 4.135 17 C 0.500 3.500 18 O -0.573 6.573 19 H 0.051 0.949 20 H 0.040 0.960 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.033 0.967 24 H 0.068 0.932 25 H 0.267 0.733 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 -2.211 -9.566 9.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 C -0.218 4.218 4 C -0.558 4.558 5 H 0.101 0.899 6 C -0.123 4.123 7 N -0.518 5.518 8 Si 0.723 3.277 9 H -0.218 1.218 10 H -0.233 1.233 11 H -0.174 1.174 12 N -0.304 5.304 13 C -0.003 4.003 14 C -0.177 4.177 15 C -0.161 4.161 16 C -0.176 4.176 17 C 0.287 3.713 18 O -0.455 6.455 19 H 0.070 0.930 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.513 -1.768 -9.438 9.616 hybrid contribution 0.957 0.367 -0.385 1.096 sum 0.445 -1.401 -9.824 9.933 Atomic orbital electron populations 1.21900 0.96471 1.00210 1.00755 1.18582 0.91604 0.89750 0.83267 1.22524 0.99144 0.98622 1.01492 1.21042 0.93138 1.35616 1.06016 0.89946 1.25149 0.98433 0.93974 0.94765 1.69909 1.15041 1.39700 1.27118 0.87189 0.78817 0.78804 0.82872 1.21781 1.23304 1.17356 1.48603 1.51805 1.23574 1.06392 1.21259 0.96456 0.85931 0.96607 1.21983 1.01905 0.98347 0.95416 1.21645 0.98542 0.97080 0.98795 1.21652 1.00029 0.99441 0.96432 1.19994 0.80143 0.85414 0.85721 1.90547 1.43864 1.23302 1.87832 0.92956 0.94052 0.92943 0.92733 0.94852 0.91358 0.92266 0.93159 0.88584 0.90652 0.91472 0.91627 0.91525 0.89450 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.36 37.16 0.31 -2.66 16 2 C 0.25 5.94 0.60 -132.97 -0.08 5.86 16 3 C -0.16 -3.86 7.18 37.16 0.27 -3.59 16 4 C -0.52 -13.81 7.04 -34.44 -0.24 -14.05 16 5 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 6 C 0.08 2.22 4.61 -17.82 -0.08 2.14 16 7 N -0.88 -25.25 13.96 55.43 0.77 -24.48 16 8 Si 0.89 21.87 20.83 -169.99 -3.54 18.33 16 9 H -0.29 -7.33 7.00 56.52 0.40 -6.94 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.25 -5.87 4.80 56.52 0.27 -5.60 16 12 N -0.57 -12.54 1.43 -161.36 -0.23 -12.77 16 13 C 0.12 2.42 4.31 -4.48 -0.02 2.40 16 14 C -0.14 -2.10 6.02 -26.59 -0.16 -2.26 16 15 C -0.12 -1.74 6.04 -26.52 -0.16 -1.90 16 16 C -0.14 -2.14 6.03 -28.11 -0.17 -2.31 16 17 C 0.50 10.44 6.65 -11.88 -0.08 10.36 16 18 O -0.57 -13.44 12.59 5.55 0.07 -13.37 16 19 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 20 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.05 1.15 6.35 -51.93 -0.33 0.82 16 22 H 0.05 1.27 8.12 -51.92 -0.42 0.85 16 23 H 0.03 0.82 2.79 -51.93 -0.15 0.68 16 24 H 0.07 1.63 5.86 -51.93 -0.30 1.33 16 25 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.05 1.09 3.94 -51.93 -0.20 0.88 16 27 H 0.10 2.08 6.91 -51.93 -0.36 1.72 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 30 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 31 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 32 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 239.92 15.07 3.62 3.62 Total: -1.00 -29.76 239.92 -4.56 -34.32 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.84 Total: 0.38 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -0.42 Total: -6.02 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.54 Total: -37.25 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -3.54 Total: 18.33 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.76 -4.56 -34.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251312.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.284 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds