Wall clock time and date at job start Mon Mar 30 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 N 1.46498 * 109.47281 * 120.00017 * 2 1 3 5 5 C 1.45757 * 117.94621 * 119.99987 * 4 2 1 6 6 C 1.52918 * 110.48561 * 199.07338 * 5 4 2 7 7 C 1.53342 * 108.67870 * 309.24856 * 6 5 4 8 8 C 1.53070 * 108.42358 * 67.52617 * 7 6 5 9 9 H 1.09002 * 109.39832 * 71.14610 * 8 7 6 10 10 C 1.50698 * 109.40111 * 190.97277 * 8 7 6 11 11 H 1.08004 * 120.00410 * 5.58616 * 10 8 7 12 12 C 1.37879 * 120.00215 * 185.58961 * 10 8 7 13 13 N 1.31511 * 119.99857 * 14.22989 * 12 10 8 14 14 Si 1.86797 * 120.00175 * 194.23340 * 12 10 8 15 15 H 1.48499 * 109.47375 * 179.97438 * 14 12 10 16 16 H 1.48491 * 109.47299 * 59.99772 * 14 12 10 17 17 H 1.48504 * 109.47182 * 299.99323 * 14 12 10 18 18 C 1.33345 * 117.94730 * 300.00069 * 4 2 1 19 19 O 1.21286 * 118.24422 * 357.77707 * 18 4 2 20 20 H 1.08994 * 109.47050 * 300.00218 * 1 2 3 21 21 H 1.09004 * 109.46925 * 60.00391 * 1 2 3 22 22 H 1.09001 * 109.46982 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46901 * 240.00310 * 2 1 3 24 24 H 1.09001 * 109.47323 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.46919 * 299.99613 * 3 2 1 26 26 H 1.08994 * 109.47353 * 59.99968 * 3 2 1 27 27 H 1.09004 * 109.30075 * 78.76612 * 5 4 2 28 28 H 1.08998 * 109.13620 * 319.28322 * 5 4 2 29 29 H 1.08999 * 109.60108 * 189.49090 * 6 5 4 30 30 H 1.09007 * 109.60248 * 69.00532 * 6 5 4 31 31 H 1.09002 * 109.67343 * 307.79996 * 7 6 5 32 32 H 1.08997 * 109.70927 * 187.28429 * 7 6 5 33 33 H 0.97000 * 120.00578 * 5.51075 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8530 -1.8710 1.0104 6 6 2.8769 -2.7155 2.2851 7 6 3.2232 -1.8061 3.4702 8 6 2.0609 -0.8348 3.6905 9 1 1.2074 -1.3777 4.0966 10 6 2.4814 0.2367 4.6631 11 1 3.5027 0.2788 5.0120 12 6 1.5625 1.1635 5.1076 13 7 0.2775 0.9594 4.9163 14 14 2.1426 2.7091 5.9817 15 1 0.9678 3.5368 6.3558 16 1 3.0274 3.4866 5.0775 17 1 2.8937 2.3330 7.2063 18 6 1.6714 -0.1999 2.3865 19 8 1.0056 0.8134 2.4177 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8901 26 1 1.6767 1.9563 0.8899 27 1 3.8685 -1.5593 0.7657 28 1 2.4518 -2.4670 0.1908 29 1 3.6305 -3.4974 2.1916 30 1 1.8970 -3.1658 2.4438 31 1 4.1323 -1.2465 3.2500 32 1 3.3718 -2.4097 4.3656 33 1 -0.0291 0.1218 4.5350 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261320875.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:53 Heat of formation + Delta-G solvation = -64.239724 kcal Electronic energy + Delta-G solvation = -15168.557324 eV Core-core repulsion = 12807.051571 eV Total energy + Delta-G solvation = -2361.505753 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.39498 -37.07371 -36.80424 -34.40295 -31.85915 -30.28345 -28.07747 -26.58349 -24.48557 -23.77930 -21.80135 -19.47130 -18.78680 -17.31315 -16.74005 -16.24258 -15.63268 -15.47275 -15.08016 -14.65379 -14.42324 -14.15282 -13.92192 -13.52173 -13.01493 -12.85763 -12.61667 -12.42265 -12.35870 -12.09318 -12.04543 -11.92783 -11.59840 -11.40588 -10.82386 -10.28343 -9.86242 -9.37072 -8.53464 -6.22114 1.47898 1.58567 1.75719 2.19514 2.35542 2.62704 3.34869 3.89329 3.98741 4.05142 4.21646 4.27083 4.33336 4.46983 4.66931 4.69877 4.74377 4.74738 4.88174 4.93673 4.97594 5.03518 5.16460 5.27890 5.40817 5.44706 5.49369 5.99170 6.02913 6.21392 6.62233 6.97353 7.57177 7.82567 8.84675 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.031097 B = 0.013439 C = 0.010859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.197634 B = 2083.004367 C = 2577.805919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 C -0.163 4.163 4 N -0.619 5.619 5 C 0.114 3.886 6 C -0.127 4.127 7 C -0.100 4.100 8 C 0.016 3.984 9 H 0.014 0.986 10 C -0.630 4.630 11 H 0.047 0.953 12 C -0.004 4.004 13 N -0.892 5.892 14 Si 1.103 2.897 15 H -0.287 1.287 16 H -0.284 1.284 17 H -0.263 1.263 18 C 0.501 3.499 19 O -0.559 6.559 20 H 0.035 0.965 21 H 0.080 0.920 22 H 0.053 0.947 23 H 0.116 0.884 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.781 -6.735 -10.667 13.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 C -0.221 4.221 4 N -0.354 5.354 5 C -0.008 4.008 6 C -0.164 4.164 7 C -0.138 4.138 8 C -0.005 4.005 9 H 0.032 0.968 10 C -0.667 4.667 11 H 0.065 0.935 12 C -0.209 4.209 13 N -0.524 5.524 14 Si 0.926 3.074 15 H -0.213 1.213 16 H -0.210 1.210 17 H -0.188 1.188 18 C 0.291 3.709 19 O -0.437 6.437 20 H 0.054 0.946 21 H 0.099 0.901 22 H 0.072 0.928 23 H 0.134 0.866 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.906 -4.825 -9.977 12.119 hybrid contribution 0.224 -1.242 -0.369 1.315 sum 5.130 -6.067 -10.346 13.044 Atomic orbital electron populations 1.22100 0.96025 1.01504 1.02246 1.21109 0.94124 0.93322 0.88032 1.22133 1.00339 0.97292 1.02337 1.47822 1.52415 1.29848 1.05346 1.21565 0.94779 0.85546 0.98866 1.21890 1.02922 0.98081 0.93547 1.21514 0.97182 0.96539 0.98520 1.18859 0.95729 0.95421 0.90528 0.96791 1.21861 0.97818 1.17220 1.29777 0.93500 1.26911 0.93629 1.04230 0.96102 1.70729 1.15900 1.26063 1.39736 0.83159 0.75239 0.73121 0.75874 1.21315 1.20995 1.18763 1.21534 0.78461 0.84777 0.86142 1.90555 1.39755 1.25826 1.87558 0.94578 0.90133 0.92758 0.86610 0.93195 0.90265 0.94188 0.91315 0.88389 0.86955 0.92299 0.92837 0.92013 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.47 9.08 71.98 0.65 -4.82 16 2 C 0.14 4.45 3.21 44.99 0.14 4.60 16 3 C -0.16 -5.73 9.08 71.98 0.65 -5.08 16 4 N -0.62 -23.31 2.79 -802.64 -2.24 -25.55 16 5 C 0.11 3.10 6.26 86.49 0.54 3.64 16 6 C -0.13 -3.58 6.02 30.68 0.18 -3.39 16 7 C -0.10 -3.88 5.28 30.73 0.16 -3.72 16 8 C 0.02 0.82 2.03 -12.43 -0.03 0.80 16 9 H 0.01 0.81 7.23 -2.39 -0.02 0.80 16 10 C -0.63 -37.08 8.37 25.60 0.21 -36.87 16 11 H 0.05 2.71 7.79 -2.91 -0.02 2.68 16 12 C 0.00 -0.26 4.53 84.66 0.38 0.13 16 13 N -0.89 -58.30 12.34 21.45 0.26 -58.04 16 14 Si 1.10 54.45 29.93 68.60 2.05 56.50 16 15 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 16 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.50 25.12 6.37 87.71 0.56 25.67 16 19 O -0.56 -32.68 9.41 -3.05 -0.03 -32.71 16 20 H 0.04 1.61 6.00 -2.39 -0.01 1.59 16 21 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.12 2.72 7.79 -2.38 -0.02 2.70 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.04 1.84 5.84 -2.39 -0.01 1.82 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.10 1.96 8.03 -2.39 -0.02 1.94 16 29 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 1.73 8.12 -2.38 -0.02 1.71 16 31 H 0.05 2.10 8.09 -2.39 -0.02 2.08 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.25 16.97 6.62 -92.71 -0.61 16.36 16 Total: -1.00 -75.37 258.51 4.75 -70.62 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.23 Total: 8.22 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 3.47 Total: -19.04 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -1.97 Total: -83.59 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.03 Total: -32.71 kcal Atomic # 14 Polarization: 54.45 SS G_CDS: 2.05 Total: 56.50 kcal Total: -75.37 4.75 -70.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261320875.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.382 kcal (2) G-P(sol) polarization free energy of solvation -75.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds