Wall clock time and date at job start Mon Mar 30 2020 02:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46902 * 2 1 4 4 C 1.53004 * 109.47132 * 240.00428 * 2 1 3 5 5 N 1.46498 * 109.47231 * 119.99757 * 2 1 3 6 6 C 1.34417 * 124.35534 * 239.97728 * 5 2 1 7 7 O 1.21284 * 124.93817 * 0.45327 * 6 5 2 8 8 C 1.51280 * 110.11945 * 180.43158 * 6 5 2 9 9 C 1.54631 * 104.19457 * 16.25161 * 8 6 5 10 10 C 1.46766 * 124.34663 * 60.00389 * 5 2 1 11 11 H 1.08996 * 110.24758 * 43.95922 * 10 5 2 12 12 C 1.50705 * 110.24611 * 281.96192 * 10 5 2 13 13 H 1.07998 * 119.99515 * 359.97438 * 12 10 5 14 14 C 1.37871 * 119.99977 * 180.02562 * 12 10 5 15 15 N 1.31516 * 120.00297 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99735 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47338 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47174 * 120.00161 * 16 14 12 19 19 H 1.48508 * 109.46950 * 240.00029 * 16 14 12 20 20 H 1.09003 * 109.47188 * 300.00050 * 1 2 3 21 21 H 1.09004 * 109.47386 * 59.99903 * 1 2 3 22 22 H 1.09005 * 109.47233 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47012 * 179.97438 * 3 2 1 24 24 H 1.08991 * 109.47038 * 300.00056 * 3 2 1 25 25 H 1.09001 * 109.46739 * 60.00112 * 3 2 1 26 26 H 1.09002 * 109.46665 * 299.99399 * 4 2 1 27 27 H 1.08997 * 109.47248 * 59.99938 * 4 2 1 28 28 H 1.08998 * 109.46982 * 179.97438 * 4 2 1 29 29 H 1.08997 * 110.48916 * 134.93032 * 8 6 5 30 30 H 1.09001 * 110.48309 * 257.44473 * 8 6 5 31 31 H 1.08998 * 110.96818 * 217.08910 * 9 8 6 32 32 H 1.08998 * 110.97151 * 93.32112 * 9 8 6 33 33 H 0.96994 * 120.00141 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6905 1.1962 6 6 2.7947 -0.1235 2.1356 7 8 3.1805 1.0262 2.1166 8 6 3.1167 -1.1277 3.2202 9 6 2.7669 -2.4945 2.5874 10 6 1.7232 -2.0907 1.5225 11 1 1.8286 -2.7151 0.6353 12 6 0.3303 -2.2127 2.0847 13 1 -0.2869 -1.3332 2.1936 14 6 -0.1555 -3.4469 2.4611 15 7 0.5968 -4.5177 2.3299 16 14 -1.8818 -3.5980 3.1587 17 1 -2.5168 -2.2564 3.2035 18 1 -2.6877 -4.4979 2.2950 19 1 -1.8134 -4.1600 4.5316 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2493 27 1 1.6767 -0.2073 -2.1393 28 1 3.1300 -0.7208 -1.2495 29 1 4.1752 -1.0859 3.4768 30 1 2.5036 -0.9456 4.1029 31 1 2.3302 -3.1662 3.3265 32 1 3.6439 -2.9453 2.1229 33 1 0.2551 -5.3859 2.5950 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261321953.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:05 Heat of formation + Delta-G solvation = -58.922894 kcal Electronic energy + Delta-G solvation = -15103.728892 eV Core-core repulsion = 12742.453695 eV Total energy + Delta-G solvation = -2361.275198 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.44210 -37.63892 -36.68776 -34.28731 -30.90028 -29.37230 -28.21011 -27.91231 -25.78753 -22.62223 -21.91256 -19.31746 -18.60202 -17.24924 -16.87573 -16.34142 -15.68893 -14.98441 -14.87119 -14.52679 -14.39815 -14.00950 -13.83832 -13.12574 -12.97245 -12.84375 -12.77010 -12.59422 -12.50969 -12.28818 -12.10362 -12.03557 -11.87529 -11.64181 -11.09061 -10.51735 -10.16706 -9.34054 -8.11209 -6.23752 1.41445 1.46562 1.54920 1.82104 2.35454 2.50748 3.16686 3.73435 4.02900 4.08107 4.23409 4.24058 4.38426 4.66346 4.73327 4.78840 4.84230 4.90739 4.98551 5.03432 5.06452 5.13503 5.27289 5.33899 5.46647 5.54198 5.61153 5.78876 6.05813 6.24053 6.55795 6.84341 7.41305 7.53887 8.92537 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.032282 B = 0.012629 C = 0.010931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.157496 B = 2216.588871 C = 2560.976123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.161 3.839 3 C -0.124 4.124 4 C -0.145 4.145 5 N -0.592 5.592 6 C 0.504 3.496 7 O -0.589 6.589 8 C -0.142 4.142 9 C -0.105 4.105 10 C 0.261 3.739 11 H 0.025 0.975 12 C -0.526 4.526 13 H 0.054 0.946 14 C 0.029 3.971 15 N -0.909 5.909 16 Si 0.947 3.053 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.281 1.281 20 H 0.036 0.964 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 4.217 -3.747 5.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.077 3.923 3 C -0.181 4.181 4 C -0.203 4.203 5 N -0.323 5.323 6 C 0.293 3.707 7 O -0.473 6.473 8 C -0.182 4.182 9 C -0.144 4.144 10 C 0.159 3.841 11 H 0.043 0.957 12 C -0.565 4.565 13 H 0.072 0.928 14 C -0.172 4.172 15 N -0.548 5.548 16 Si 0.774 3.226 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.207 1.207 20 H 0.055 0.945 21 H 0.100 0.900 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.177 4.620 -3.827 6.113 hybrid contribution -0.966 -0.512 0.576 1.236 sum 0.212 4.107 -3.251 5.242 Atomic orbital electron populations 1.22117 0.94023 1.02591 1.01300 1.20590 0.94582 0.92536 0.84553 1.21937 1.00889 0.93738 1.01540 1.22065 1.00792 1.00637 0.96785 1.48769 1.47786 1.14364 1.21387 1.21243 0.77643 0.87550 0.84221 1.90580 1.58325 1.19126 1.79269 1.22251 1.03360 0.94943 0.97648 1.22391 0.97550 0.94967 0.99480 1.19195 0.94119 0.76681 0.94069 0.95699 1.21561 0.99329 0.93404 1.42187 0.92759 1.25469 1.00408 0.95468 0.95851 1.70023 1.37616 0.99064 1.48085 0.85675 0.80961 0.77861 0.78138 1.19910 1.20735 1.20708 0.94494 0.89951 0.92285 0.93220 0.90156 0.93868 0.93155 0.89122 0.93037 0.87903 0.88702 0.90381 0.92620 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 7.40 71.98 0.53 -4.49 16 2 C 0.16 5.86 1.20 3.61 0.00 5.87 16 3 C -0.12 -4.24 7.00 71.98 0.50 -3.73 16 4 C -0.14 -4.56 8.49 71.98 0.61 -3.95 16 5 N -0.59 -25.15 2.47 -751.64 -1.86 -27.01 16 6 C 0.50 21.89 7.84 87.90 0.69 22.58 16 7 O -0.59 -27.29 13.99 -3.04 -0.04 -27.33 16 8 C -0.14 -5.53 6.85 30.59 0.21 -5.32 16 9 C -0.11 -4.51 6.29 31.65 0.20 -4.31 16 10 C 0.26 12.09 2.63 44.70 0.12 12.20 16 11 H 0.03 1.26 7.12 -2.39 -0.02 1.24 16 12 C -0.53 -26.29 7.10 25.60 0.18 -26.10 16 13 H 0.05 2.79 6.66 -2.91 -0.02 2.78 16 14 C 0.03 1.45 5.11 84.65 0.43 1.88 16 15 N -0.91 -47.50 12.06 21.45 0.26 -47.25 16 16 Si 0.95 40.94 29.54 68.60 2.03 42.97 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 20 H 0.04 1.39 7.91 -2.39 -0.02 1.37 16 21 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 22 H 0.06 2.34 6.70 -2.38 -0.02 2.32 16 23 H 0.05 1.82 7.08 -2.39 -0.02 1.80 16 24 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.04 1.66 7.06 -2.39 -0.02 1.64 16 26 H 0.05 1.72 7.21 -2.39 -0.02 1.71 16 27 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 30 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 31 H 0.08 3.66 6.68 -2.39 -0.02 3.65 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 Total: -1.00 -56.25 261.00 4.94 -51.31 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.08 Total: 12.69 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 3.48 Total: -5.38 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -1.60 Total: -74.25 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.04 Total: -27.33 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -56.25 4.94 -51.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321953.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.615 kcal (2) G-P(sol) polarization free energy of solvation -56.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds