Wall clock time and date at job start Mon Mar 30 2020 02:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46871 * 2 1 4 4 C 1.52999 * 109.47128 * 240.00254 * 2 1 3 5 5 N 1.46497 * 109.47219 * 120.00040 * 2 1 3 6 6 C 1.46762 * 124.34850 * 180.19569 * 5 2 1 7 7 C 1.54479 * 105.53509 * 163.21275 * 6 5 2 8 8 C 1.54623 * 101.76448 * 25.20998 * 7 6 5 9 9 H 1.09003 * 110.60041 * 93.93250 * 8 7 6 10 10 C 1.50705 * 110.48908 * 216.52279 * 8 7 6 11 11 H 1.08001 * 119.99531 * 356.23121 * 10 8 7 12 12 C 1.37874 * 120.00355 * 176.22653 * 10 8 7 13 13 N 1.31518 * 119.99746 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00248 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46853 * 90.00020 * 14 12 10 16 16 H 1.48494 * 109.47270 * 210.00108 * 14 12 10 17 17 H 1.48499 * 109.47017 * 330.00533 * 14 12 10 18 18 C 1.34417 * 124.35094 * 0.02562 * 5 2 1 19 19 O 1.21283 * 124.94355 * 0.43141 * 18 5 2 20 20 H 1.09006 * 109.47418 * 299.99730 * 1 2 3 21 21 H 1.09001 * 109.47457 * 60.00262 * 1 2 3 22 22 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46710 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47111 * 299.99651 * 3 2 1 25 25 H 1.08995 * 109.46808 * 60.00409 * 3 2 1 26 26 H 1.08997 * 109.47052 * 299.99623 * 4 2 1 27 27 H 1.09001 * 109.47373 * 59.99432 * 4 2 1 28 28 H 1.08997 * 109.46933 * 180.02562 * 4 2 1 29 29 H 1.09004 * 110.38933 * 44.10688 * 6 5 2 30 30 H 1.08994 * 110.04470 * 282.14598 * 6 5 2 31 31 H 1.09006 * 110.97141 * 267.09046 * 7 6 5 32 32 H 1.09002 * 110.97085 * 143.33080 * 7 6 5 33 33 H 0.96998 * 119.99939 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 3.4367 -0.8754 1.5245 7 6 3.4694 -1.2465 3.0237 8 6 2.0644 -1.8591 3.2275 9 1 2.0976 -2.9423 3.1099 10 6 1.5214 -1.4937 4.5850 11 1 2.1321 -0.9340 5.2780 12 6 0.2452 -1.8738 4.9423 13 7 -0.4983 -2.5557 4.0985 14 14 -0.4276 -1.4214 6.6252 15 1 -1.1088 -0.1041 6.5481 16 1 -1.3982 -2.4557 7.0646 17 1 0.6896 -1.3447 7.6005 18 6 1.2249 -1.2335 2.1355 19 8 0.0123 -1.2274 2.1089 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6767 -1.7488 -1.2493 27 1 1.6766 -0.2074 -2.1393 28 1 3.1299 -0.7216 -1.2490 29 1 3.9898 0.0480 1.3524 30 1 3.8563 -1.6843 0.9265 31 1 3.6014 -0.3588 3.6425 32 1 4.2486 -1.9811 3.2269 33 1 -1.3960 -2.8234 4.3499 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261322611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:37 Heat of formation + Delta-G solvation = -30.092845 kcal Electronic energy + Delta-G solvation = -15006.728310 eV Core-core repulsion = 12646.703277 eV Total energy + Delta-G solvation = -2360.025033 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.47223 -35.64479 -34.67933 -32.39169 -29.26685 -27.21890 -27.00253 -26.42119 -23.73996 -21.24696 -19.79545 -17.59727 -16.25641 -15.62422 -15.06716 -14.33582 -14.10053 -13.54906 -13.28501 -12.86968 -12.44725 -12.07396 -11.92452 -11.73944 -11.56432 -11.50848 -11.20331 -10.95493 -10.80176 -10.68249 -10.50172 -10.44870 -10.15077 -9.43047 -9.09201 -8.32579 -7.73251 -7.57119 -5.83759 -3.91834 3.38336 3.44756 3.46280 3.96682 4.31609 4.56104 5.16321 5.35912 5.46657 5.49158 5.62244 5.81037 5.83451 5.88292 5.97809 6.03736 6.16791 6.19265 6.25643 6.37692 6.41750 6.59261 6.70022 6.80683 6.97240 7.03808 7.57283 7.77702 7.97700 8.25739 8.52501 9.02518 9.69100 9.95121 11.20158 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.042727 B = 0.010809 C = 0.009742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.166047 B = 2589.774765 C = 2873.573669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.173 3.827 3 C -0.154 4.154 4 C -0.152 4.152 5 N -0.638 5.638 6 C 0.112 3.888 7 C -0.128 4.128 8 C 0.026 3.974 9 H 0.055 0.945 10 C -0.537 4.537 11 H 0.060 0.940 12 C 0.073 3.927 13 N -0.835 5.835 14 Si 0.888 3.112 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.517 3.483 19 O -0.486 6.486 20 H 0.068 0.932 21 H 0.041 0.959 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 4.307 -7.983 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.088 3.912 3 C -0.212 4.212 4 C -0.211 4.211 5 N -0.378 5.378 6 C -0.011 4.011 7 C -0.166 4.166 8 C 0.005 3.995 9 H 0.072 0.928 10 C -0.575 4.575 11 H 0.078 0.922 12 C -0.134 4.134 13 N -0.468 5.468 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.200 1.200 18 C 0.306 3.694 19 O -0.357 6.357 20 H 0.087 0.913 21 H 0.060 0.940 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.648 4.222 -8.079 10.723 hybrid contribution -0.293 0.335 0.777 0.896 sum 5.355 4.557 -7.301 10.136 Atomic orbital electron populations 1.22022 0.92772 1.03482 1.00831 1.20209 0.95007 0.90897 0.85060 1.22169 1.00854 0.96458 1.01747 1.22161 1.00816 1.00965 0.97129 1.48901 1.07059 1.59230 1.22642 1.21768 0.83039 0.99191 0.97133 1.22640 0.99722 1.01012 0.93197 1.19417 0.89163 0.96623 0.94311 0.92774 1.20681 1.00093 1.38731 0.97993 0.92219 1.25020 0.96949 0.94890 0.96581 1.70105 1.08742 1.34531 1.33406 0.86669 0.78836 0.78169 0.84697 1.20820 1.21291 1.19950 1.22226 0.88338 0.77142 0.81726 1.90618 1.12772 1.56578 1.75691 0.91299 0.94042 0.91239 0.92866 0.92437 0.92346 0.92459 0.92416 0.92894 0.92713 0.93304 0.91306 0.91606 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 7.00 37.15 0.26 -2.27 16 2 C 0.17 2.99 1.20 -131.82 -0.16 2.83 16 3 C -0.15 -2.26 8.49 37.16 0.32 -1.95 16 4 C -0.15 -2.19 8.54 37.16 0.32 -1.87 16 5 N -0.64 -12.98 2.76 -157.58 -0.43 -13.42 16 6 C 0.11 1.94 6.59 -3.12 -0.02 1.92 16 7 C -0.13 -2.49 6.68 -25.10 -0.17 -2.66 16 8 C 0.03 0.66 2.88 -91.78 -0.26 0.40 16 9 H 0.05 1.46 8.14 -51.93 -0.42 1.04 16 10 C -0.54 -15.10 8.54 -34.44 -0.29 -15.39 16 11 H 0.06 1.63 7.63 -52.49 -0.40 1.23 16 12 C 0.07 2.13 5.14 -17.82 -0.09 2.04 16 13 N -0.83 -25.48 10.81 55.43 0.60 -24.88 16 14 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 15 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.52 13.19 7.18 -10.86 -0.08 13.11 16 19 O -0.49 -14.07 11.11 5.55 0.06 -14.01 16 20 H 0.07 1.49 7.08 -51.93 -0.37 1.13 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 1.48 7.06 -51.93 -0.37 1.12 16 23 H 0.05 0.71 7.22 -51.92 -0.37 0.33 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.69 7.90 -51.93 -0.41 0.28 16 29 H 0.05 0.82 7.13 -51.93 -0.37 0.45 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.35 7.79 -51.93 -0.40 0.94 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 263.04 15.07 3.96 3.96 Total: -1.00 -31.82 263.04 -6.22 -38.05 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.21 Total: -2.95 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -0.18 Total: -3.84 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.16 Total: -38.30 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.06 Total: -14.01 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.82 -6.22 -38.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.955 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds