Wall clock time and date at job start Mon Mar 30 2020 02:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46749 * 2 1 4 4 C 1.53003 * 109.47027 * 240.00630 * 2 1 3 5 5 N 1.46494 * 109.47379 * 120.00232 * 2 1 3 6 6 C 1.46757 * 124.34836 * 60.00359 * 5 2 1 7 7 C 1.54490 * 105.47171 * 197.02023 * 6 5 2 8 8 C 1.54627 * 101.76165 * 334.57876 * 7 6 5 9 9 H 1.09004 * 110.48901 * 265.98934 * 8 7 6 10 10 C 1.50702 * 110.48305 * 143.47685 * 8 7 6 11 11 H 1.08002 * 120.00299 * 1.84629 * 10 8 7 12 12 C 1.37884 * 119.99942 * 181.56187 * 10 8 7 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 8 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 8 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.34661 * 124.31257 * 239.87479 * 5 2 1 19 19 O 1.21283 * 125.07146 * 359.64349 * 18 5 2 20 20 H 1.09006 * 109.46779 * 299.99473 * 1 2 3 21 21 H 1.08997 * 109.47269 * 59.99463 * 1 2 3 22 22 H 1.08998 * 109.46858 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46989 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47206 * 300.00108 * 3 2 1 25 25 H 1.08993 * 109.47211 * 60.00588 * 3 2 1 26 26 H 1.09005 * 109.46845 * 299.99461 * 4 2 1 27 27 H 1.09000 * 109.47554 * 59.99509 * 4 2 1 28 28 H 1.08997 * 109.47074 * 179.97438 * 4 2 1 29 29 H 1.08994 * 110.25135 * 78.01853 * 6 5 2 30 30 H 1.09003 * 110.32344 * 316.05127 * 6 5 2 31 31 H 1.09006 * 110.96746 * 216.46655 * 7 6 5 32 32 H 1.08993 * 110.97416 * 92.70087 * 7 6 5 33 33 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 2.0184 -0.6906 1.1961 6 6 1.7233 -2.0907 1.5223 7 6 2.0551 -2.2428 3.0235 8 6 3.0996 -1.1216 3.2306 9 1 4.1097 -1.5159 3.1194 10 6 2.9291 -0.4860 4.5864 11 1 2.1736 -0.8546 5.2645 12 6 3.7416 0.5623 4.9634 13 7 3.5964 1.1134 6.1486 14 14 5.0483 1.1997 3.7906 15 1 4.4721 2.2759 2.9450 16 1 6.1912 1.7406 4.5696 17 1 5.5207 0.0894 2.9250 18 6 2.7977 -0.1223 2.1357 19 8 3.1976 1.0225 2.1105 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2494 27 1 1.6766 -0.2073 -2.1393 28 1 3.1300 -0.7207 -1.2496 29 1 2.3493 -2.7565 0.9283 30 1 0.6697 -2.3068 1.3452 31 1 2.4876 -3.2219 3.2301 32 1 1.1713 -2.0710 3.6377 33 1 4.1678 1.8511 6.4137 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261322612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:40 Heat of formation + Delta-G solvation = -31.572858 kcal Electronic energy + Delta-G solvation = -15108.141135 eV Core-core repulsion = 12748.051924 eV Total energy + Delta-G solvation = -2360.089211 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.99249 -36.21028 -35.19605 -32.45050 -29.83079 -27.65721 -27.19565 -26.79002 -23.72618 -21.59390 -19.86906 -18.06538 -16.92239 -16.04296 -15.45962 -14.50803 -14.17179 -13.76170 -13.58911 -13.24365 -12.99494 -12.56875 -12.26738 -12.21188 -11.83641 -11.71661 -11.42003 -11.22901 -10.93832 -10.73077 -10.54261 -9.89967 -9.82353 -9.67713 -9.46070 -8.72266 -8.03336 -7.79645 -5.99277 -4.08732 3.46182 3.54416 3.72398 3.81413 3.99255 4.72775 4.92176 5.12953 5.23941 5.28099 5.38994 5.56845 5.64735 5.67017 5.74363 5.84853 5.90846 5.96230 6.04755 6.17182 6.21149 6.24154 6.38464 6.55519 6.70443 6.76781 7.11580 7.33574 7.60345 7.96787 8.46532 8.94326 9.19517 9.60230 11.08482 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.038219 B = 0.013074 C = 0.011268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.440715 B = 2141.198581 C = 2484.399807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.170 3.830 3 C -0.139 4.139 4 C -0.153 4.153 5 N -0.623 5.623 6 C 0.107 3.893 7 C -0.116 4.116 8 C -0.015 4.015 9 H 0.063 0.937 10 C -0.521 4.521 11 H 0.078 0.922 12 C 0.077 3.923 13 N -0.894 5.894 14 Si 0.943 3.057 15 H -0.259 1.259 16 H -0.329 1.329 17 H -0.293 1.293 18 C 0.509 3.491 19 O -0.518 6.518 20 H 0.060 0.940 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 -5.602 -13.531 15.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.085 3.915 3 C -0.196 4.196 4 C -0.212 4.212 5 N -0.359 5.359 6 C -0.017 4.017 7 C -0.154 4.154 8 C -0.036 4.036 9 H 0.080 0.920 10 C -0.558 4.558 11 H 0.096 0.904 12 C -0.128 4.128 13 N -0.530 5.530 14 Si 0.780 3.220 15 H -0.186 1.186 16 H -0.262 1.262 17 H -0.220 1.220 18 C 0.302 3.698 19 O -0.397 6.397 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.557 -4.835 -13.481 15.029 hybrid contribution 0.509 0.277 -0.605 0.837 sum -4.048 -4.559 -14.086 15.348 Atomic orbital electron populations 1.22164 0.95102 1.01836 1.02187 1.20347 0.93371 0.93124 0.84619 1.22069 1.02481 0.93545 1.01505 1.22165 1.01607 1.00379 0.97002 1.48743 1.52588 1.12312 1.22258 1.21943 0.99876 0.82481 0.97363 1.22538 1.00480 0.99396 0.93003 1.19986 0.96644 0.92275 0.94734 0.91973 1.20589 1.20826 1.17708 0.96682 0.90393 1.25162 0.97289 0.95241 0.95085 1.69936 1.39383 1.23871 1.19835 0.85763 0.77360 0.80684 0.78157 1.18605 1.26177 1.21976 1.22877 0.75524 0.89378 0.82051 1.90537 1.53861 1.18845 1.76501 0.92055 0.92039 0.92594 0.91450 0.93354 0.90975 0.92580 0.91978 0.92435 0.92537 0.91791 0.90763 0.90460 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.49 37.16 0.32 -1.74 16 2 C 0.17 2.66 1.20 -131.82 -0.16 2.50 16 3 C -0.14 -2.40 7.00 37.16 0.26 -2.14 16 4 C -0.15 -1.95 8.54 37.16 0.32 -1.63 16 5 N -0.62 -11.60 2.76 -157.50 -0.44 -12.03 16 6 C 0.11 1.65 6.59 -3.12 -0.02 1.63 16 7 C -0.12 -2.11 6.68 -25.09 -0.17 -2.28 16 8 C -0.01 -0.35 2.38 -91.78 -0.22 -0.57 16 9 H 0.06 1.50 7.18 -51.93 -0.37 1.13 16 10 C -0.52 -14.99 9.10 -34.44 -0.31 -15.30 16 11 H 0.08 2.36 7.86 -52.49 -0.41 1.95 16 12 C 0.08 2.34 5.42 -17.82 -0.10 2.24 16 13 N -0.89 -28.51 13.96 55.43 0.77 -27.73 16 14 Si 0.94 26.25 23.87 -169.99 -4.06 22.19 16 15 H -0.26 -7.45 5.94 56.52 0.34 -7.12 16 16 H -0.33 -9.13 7.11 56.52 0.40 -8.73 16 17 H -0.29 -7.89 6.52 56.52 0.37 -7.52 16 18 C 0.51 12.01 6.87 -10.75 -0.07 11.93 16 19 O -0.52 -13.72 7.88 5.56 0.04 -13.68 16 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.66 7.21 -51.93 -0.37 0.29 16 23 H 0.07 1.31 7.06 -51.93 -0.37 0.94 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 1.45 7.09 -51.93 -0.37 1.08 16 26 H 0.06 0.64 7.90 -51.93 -0.41 0.23 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.84 7.13 -51.93 -0.37 0.47 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.44 7.78 -51.93 -0.40 1.04 16 33 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 254.82 15.07 3.84 3.84 Total: -1.00 -33.42 254.82 -5.26 -38.68 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -5.27 Total: -5.91 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.16 Total: -5.36 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.34 Total: -39.76 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.04 Total: -13.68 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -4.06 Total: 22.19 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.42 -5.26 -38.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.106 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds