Wall clock time and date at job start Mon Mar 30 2020 02:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46749 * 2 1 4 4 C 1.53003 * 109.47027 * 240.00630 * 2 1 3 5 5 N 1.46494 * 109.47379 * 120.00232 * 2 1 3 6 6 C 1.46757 * 124.34836 * 60.00359 * 5 2 1 7 7 C 1.54490 * 105.47171 * 197.02023 * 6 5 2 8 8 C 1.54627 * 101.76165 * 334.57876 * 7 6 5 9 9 H 1.09004 * 110.48901 * 265.98934 * 8 7 6 10 10 C 1.50702 * 110.48305 * 143.47685 * 8 7 6 11 11 H 1.08002 * 120.00299 * 1.84629 * 10 8 7 12 12 C 1.37884 * 119.99942 * 181.56187 * 10 8 7 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 8 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 8 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.34661 * 124.31257 * 239.87479 * 5 2 1 19 19 O 1.21283 * 125.07146 * 359.64349 * 18 5 2 20 20 H 1.09006 * 109.46779 * 299.99473 * 1 2 3 21 21 H 1.08997 * 109.47269 * 59.99463 * 1 2 3 22 22 H 1.08998 * 109.46858 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46989 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47206 * 300.00108 * 3 2 1 25 25 H 1.08993 * 109.47211 * 60.00588 * 3 2 1 26 26 H 1.09005 * 109.46845 * 299.99461 * 4 2 1 27 27 H 1.09000 * 109.47554 * 59.99509 * 4 2 1 28 28 H 1.08997 * 109.47074 * 179.97438 * 4 2 1 29 29 H 1.08994 * 110.25135 * 78.01853 * 6 5 2 30 30 H 1.09003 * 110.32344 * 316.05127 * 6 5 2 31 31 H 1.09006 * 110.96746 * 216.46655 * 7 6 5 32 32 H 1.08993 * 110.97416 * 92.70087 * 7 6 5 33 33 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 2.0184 -0.6906 1.1961 6 6 1.7233 -2.0907 1.5223 7 6 2.0551 -2.2428 3.0235 8 6 3.0996 -1.1216 3.2306 9 1 4.1097 -1.5159 3.1194 10 6 2.9291 -0.4860 4.5864 11 1 2.1736 -0.8546 5.2645 12 6 3.7416 0.5623 4.9634 13 7 3.5964 1.1134 6.1486 14 14 5.0483 1.1997 3.7906 15 1 4.4721 2.2759 2.9450 16 1 6.1912 1.7406 4.5696 17 1 5.5207 0.0894 2.9250 18 6 2.7977 -0.1223 2.1357 19 8 3.1976 1.0225 2.1105 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2494 27 1 1.6766 -0.2073 -2.1393 28 1 3.1300 -0.7207 -1.2496 29 1 2.3493 -2.7565 0.9283 30 1 0.6697 -2.3068 1.3452 31 1 2.4876 -3.2219 3.2301 32 1 1.1713 -2.0710 3.6377 33 1 4.1678 1.8511 6.4137 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261322612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:40 Heat of formation + Delta-G solvation = -55.204898 kcal Electronic energy + Delta-G solvation = -15109.165897 eV Core-core repulsion = 12748.051924 eV Total energy + Delta-G solvation = -2361.113973 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.58664 -37.76910 -36.78016 -34.62019 -31.55416 -29.20677 -28.19359 -28.17672 -25.67558 -23.00261 -21.56587 -19.69464 -19.03541 -17.52035 -17.01708 -16.30777 -15.97788 -15.28458 -14.92149 -14.76522 -14.59616 -14.56665 -13.81798 -13.61890 -13.13526 -12.97487 -12.66991 -12.60569 -12.37035 -12.14036 -12.02487 -11.89094 -11.79363 -11.58881 -11.44654 -10.97685 -9.79856 -9.47113 -8.35096 -6.43835 1.33112 1.46267 1.67684 1.84730 2.23563 2.46545 3.05354 3.68740 3.92274 3.98271 4.13628 4.14527 4.28734 4.45827 4.63630 4.69094 4.72762 4.82641 4.87836 4.90752 4.95821 4.97636 5.18251 5.25524 5.32986 5.38475 5.44317 5.52519 5.96045 6.14781 6.31119 6.65557 7.26826 7.45889 8.76134 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.038219 B = 0.013074 C = 0.011268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.440715 B = 2141.198581 C = 2484.399807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 C -0.135 4.135 4 C -0.145 4.145 5 N -0.615 5.615 6 C 0.107 3.893 7 C -0.109 4.109 8 C -0.031 4.031 9 H 0.062 0.938 10 C -0.514 4.514 11 H 0.051 0.949 12 C 0.025 3.975 13 N -0.939 5.939 14 Si 1.000 3.000 15 H -0.281 1.281 16 H -0.333 1.333 17 H -0.281 1.281 18 C 0.496 3.504 19 O -0.557 6.557 20 H 0.035 0.965 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.083 0.917 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.892 -7.760 -16.696 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.076 3.924 3 C -0.192 4.192 4 C -0.203 4.203 5 N -0.349 5.349 6 C -0.014 4.014 7 C -0.147 4.147 8 C -0.053 4.053 9 H 0.079 0.921 10 C -0.552 4.552 11 H 0.069 0.931 12 C -0.174 4.174 13 N -0.578 5.578 14 Si 0.837 3.163 15 H -0.209 1.209 16 H -0.267 1.267 17 H -0.207 1.207 18 C 0.287 3.713 19 O -0.440 6.440 20 H 0.054 0.946 21 H 0.107 0.893 22 H 0.097 0.903 23 H 0.058 0.942 24 H 0.101 0.899 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.713 -7.055 -16.688 18.998 hybrid contribution 0.754 0.896 0.335 1.218 sum -4.960 -6.160 -16.353 18.165 Atomic orbital electron populations 1.22121 0.92719 1.03394 1.02377 1.20719 0.95133 0.91965 0.84607 1.21990 1.00648 0.95360 1.01239 1.22100 1.00726 1.01563 0.95878 1.48770 1.50594 1.13535 1.22001 1.22227 1.02824 0.80915 0.95457 1.22521 0.98311 0.98636 0.95196 1.20031 0.98615 0.94303 0.92345 0.92061 1.20948 1.18786 1.16656 0.98785 0.93081 1.25858 0.99402 0.96127 0.96005 1.70031 1.41096 1.25232 1.21469 0.84822 0.75367 0.79822 0.76248 1.20888 1.26652 1.20715 1.22591 0.76671 0.88649 0.83364 1.90486 1.55742 1.20308 1.77488 0.94570 0.89259 0.90289 0.94243 0.89882 0.94862 0.90272 0.89353 0.93843 0.89108 0.88251 0.87705 0.91536 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.49 71.98 0.61 -2.69 16 2 C 0.16 4.43 1.20 3.61 0.00 4.44 16 3 C -0.13 -4.53 7.00 71.98 0.50 -4.03 16 4 C -0.14 -2.94 8.54 71.98 0.61 -2.33 16 5 N -0.62 -21.19 2.76 -770.68 -2.13 -23.32 16 6 C 0.11 2.80 6.59 86.84 0.57 3.37 16 7 C -0.11 -3.64 6.68 31.65 0.21 -3.43 16 8 C -0.03 -1.46 2.38 -11.55 -0.03 -1.49 16 9 H 0.06 2.88 7.18 -2.39 -0.02 2.87 16 10 C -0.51 -30.24 9.10 25.60 0.23 -30.00 16 11 H 0.05 3.20 7.86 -2.91 -0.02 3.18 16 12 C 0.03 1.59 5.42 84.66 0.46 2.05 16 13 N -0.94 -62.18 13.96 21.45 0.30 -61.88 16 14 Si 1.00 56.39 23.87 68.60 1.64 58.03 16 15 H -0.28 -16.63 5.94 99.48 0.59 -16.04 16 16 H -0.33 -18.58 7.11 99.48 0.71 -17.87 16 17 H -0.28 -14.95 6.52 99.48 0.65 -14.30 16 18 C 0.50 23.10 6.87 87.86 0.60 23.71 16 19 O -0.56 -30.08 7.88 -3.04 -0.02 -30.10 16 20 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 21 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 22 H 0.08 1.41 7.21 -2.39 -0.02 1.40 16 23 H 0.04 1.52 7.06 -2.38 -0.02 1.50 16 24 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.03 1.35 7.09 -2.39 -0.02 1.33 16 26 H 0.08 1.28 7.90 -2.38 -0.02 1.26 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.10 1.99 7.13 -2.39 -0.02 1.97 16 31 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 32 H 0.07 2.36 7.78 -2.39 -0.02 2.34 16 33 H 0.26 16.65 8.31 -92.71 -0.77 15.88 16 Total: -1.00 -77.01 254.82 4.46 -72.54 By element: Atomic # 1 Polarization: -5.76 SS G_CDS: 0.89 Total: -4.87 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 3.79 Total: -10.41 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -1.83 Total: -85.19 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.02 Total: -30.10 kcal Atomic # 14 Polarization: 56.39 SS G_CDS: 1.64 Total: 58.03 kcal Total: -77.01 4.46 -72.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.338 kcal (2) G-P(sol) polarization free energy of solvation -77.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds