Wall clock time and date at job start Mon Mar 30 2020 03:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 N 1.46500 * 109.47250 * 180.02562 * 3 2 1 5 5 C 1.45756 * 117.94369 * 270.02216 * 4 3 2 6 6 C 1.52921 * 110.48696 * 199.07423 * 5 4 3 7 7 C 1.53289 * 108.61258 * 309.22877 * 6 5 4 8 8 C 1.53075 * 108.45662 * 67.62171 * 7 6 5 9 9 H 1.09000 * 109.39648 * 71.07532 * 8 7 6 10 10 C 1.50695 * 109.40096 * 190.90241 * 8 7 6 11 11 H 1.07996 * 120.00356 * 5.68701 * 10 8 7 12 12 C 1.37880 * 119.99959 * 185.69179 * 10 8 7 13 13 N 1.31519 * 120.00092 * 196.50202 * 12 10 8 14 14 Si 1.86792 * 120.00133 * 16.49459 * 12 10 8 15 15 H 1.48497 * 109.47563 * 270.00507 * 14 12 10 16 16 H 1.48505 * 109.47229 * 30.00674 * 14 12 10 17 17 H 1.48503 * 109.47129 * 150.00129 * 14 12 10 18 18 C 1.33354 * 117.94588 * 89.99678 * 4 3 2 19 19 O 1.21275 * 118.24565 * 357.78071 * 18 4 3 20 20 H 1.08999 * 109.47146 * 59.99884 * 1 2 3 21 21 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47005 * 299.99685 * 1 2 3 23 23 H 1.09003 * 109.46903 * 239.99555 * 2 1 3 24 24 H 1.08999 * 109.47146 * 120.00116 * 2 1 3 25 25 H 1.08996 * 109.46922 * 59.99709 * 3 2 1 26 26 H 1.08999 * 109.47128 * 300.00127 * 3 2 1 27 27 H 1.09004 * 109.30185 * 319.38398 * 5 4 3 28 28 H 1.09001 * 109.30396 * 78.97068 * 5 4 3 29 29 H 1.09003 * 109.60323 * 68.99794 * 6 5 4 30 30 H 1.08995 * 109.60830 * 189.32884 * 6 5 4 31 31 H 1.09002 * 109.71958 * 307.85116 * 7 6 5 32 32 H 1.08998 * 109.60603 * 187.33357 * 7 6 5 33 33 H 0.97003 * 119.99423 * 354.36937 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1886 1.4418 1.2867 6 6 5.6353 1.9100 1.1248 7 6 6.2878 1.1019 -0.0027 8 6 5.6233 1.4916 -1.3255 9 1 5.9273 2.5019 -1.5994 10 6 6.0523 0.5301 -2.4035 11 1 6.6556 -0.3295 -2.1516 12 6 5.6747 0.7478 -3.7116 13 7 5.7579 -0.2266 -4.5910 14 14 5.0447 2.4266 -4.2348 15 1 3.5708 2.4784 -4.0616 16 1 5.6788 3.4764 -3.3973 17 1 5.3840 2.6600 -5.6616 18 6 4.1295 1.4426 -1.1789 19 8 3.4550 1.4013 -2.1859 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.6678 2.1111 1.9715 28 1 4.1838 0.4318 1.6967 29 1 5.6505 2.9702 0.8719 30 1 6.1785 1.7483 2.0558 31 1 6.1463 0.0365 0.1790 32 1 7.3530 1.3289 -0.0462 33 1 6.1605 -1.0729 -4.3405 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261323097.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:59 Heat of formation + Delta-G solvation = -49.343950 kcal Electronic energy + Delta-G solvation = -14859.906398 eV Core-core repulsion = 12499.046574 eV Total energy + Delta-G solvation = -2360.859823 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.69181 -35.67016 -35.00771 -32.80654 -31.40672 -29.14762 -26.03427 -25.08277 -21.94125 -21.68387 -20.79411 -17.79561 -17.60769 -15.87264 -15.64516 -14.85288 -14.25027 -13.88216 -13.68298 -13.28341 -12.88790 -12.59770 -12.45915 -12.10912 -11.74370 -11.57737 -11.14079 -10.97879 -10.70573 -10.40798 -10.34129 -10.03476 -9.83647 -9.64406 -9.11526 -8.19296 -8.15579 -7.87928 -6.36299 -4.05195 3.55787 3.71921 3.73505 3.90825 3.97806 4.80969 5.14995 5.20800 5.22834 5.32984 5.40833 5.52135 5.54788 5.65667 5.85479 5.91640 5.94953 6.04970 6.10763 6.17263 6.25358 6.43056 6.49544 6.52762 6.58793 6.83916 7.13881 7.26072 7.90951 8.34695 8.47759 8.96614 9.31397 9.69686 11.04411 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.027347 B = 0.013580 C = 0.010730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.637734 B = 2061.421445 C = 2608.767673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.110 3.890 4 N -0.620 5.620 5 C 0.124 3.876 6 C -0.138 4.138 7 C -0.103 4.103 8 C 0.007 3.993 9 H 0.057 0.943 10 C -0.605 4.605 11 H 0.058 0.942 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 1.070 2.930 15 H -0.262 1.262 16 H -0.294 1.294 17 H -0.307 1.307 18 C 0.504 3.496 19 O -0.532 6.532 20 H 0.055 0.945 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 4.232 13.292 14.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C -0.014 4.014 4 N -0.355 5.355 5 C 0.001 3.999 6 C -0.176 4.176 7 C -0.141 4.141 8 C -0.014 4.014 9 H 0.074 0.926 10 C -0.641 4.641 11 H 0.076 0.924 12 C -0.151 4.151 13 N -0.531 5.531 14 Si 0.901 3.099 15 H -0.188 1.188 16 H -0.221 1.221 17 H -0.236 1.236 18 C 0.295 3.705 19 O -0.409 6.409 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.211 5.023 11.467 13.975 hybrid contribution 0.628 -1.089 1.541 1.989 sum -5.584 3.933 13.007 14.691 Atomic orbital electron populations 1.21680 0.95822 1.01397 1.01463 1.21847 0.95431 0.97969 1.02483 1.21408 0.81385 0.96540 1.02035 1.47685 1.05878 1.75669 1.06317 1.21193 0.93403 1.00201 0.85153 1.21936 0.94786 1.00842 1.00012 1.21563 0.99497 0.99232 0.93825 1.19205 0.86797 0.99867 0.95567 0.92595 1.21625 1.38711 1.11430 0.92354 0.92364 1.25923 0.92540 1.03673 0.92939 1.70867 1.38962 1.04083 1.39171 0.83546 0.78535 0.74157 0.73708 1.18789 1.22103 1.23553 1.22084 0.93339 0.73567 0.81516 1.90570 1.66210 1.49117 1.34965 0.92564 0.92920 0.93159 0.91108 0.92592 0.91935 0.90140 0.92071 0.92976 0.91613 0.91091 0.92306 0.91895 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.14 -2.19 6.25 -26.73 -0.17 -2.36 16 3 C 0.11 1.82 5.20 -4.04 -0.02 1.80 16 4 N -0.62 -11.78 2.81 -174.96 -0.49 -12.27 16 5 C 0.12 1.83 6.38 -4.48 -0.03 1.80 16 6 C -0.14 -2.04 6.02 -26.62 -0.16 -2.20 16 7 C -0.10 -2.00 5.27 -26.54 -0.14 -2.14 16 8 C 0.01 0.17 1.99 -93.14 -0.18 -0.01 16 9 H 0.06 1.39 6.43 -51.93 -0.33 1.05 16 10 C -0.60 -17.73 8.74 -34.44 -0.30 -18.03 16 11 H 0.06 1.79 7.99 -52.49 -0.42 1.37 16 12 C 0.06 1.74 4.92 -17.82 -0.09 1.66 16 13 N -0.90 -29.21 13.69 55.43 0.76 -28.45 16 14 Si 1.07 29.04 25.37 -169.99 -4.31 24.73 16 15 H -0.26 -7.27 6.10 56.52 0.34 -6.93 16 16 H -0.29 -7.35 6.49 56.52 0.37 -6.98 16 17 H -0.31 -8.21 7.11 56.52 0.40 -7.81 16 18 C 0.50 12.12 6.84 -11.87 -0.08 12.04 16 19 O -0.53 -14.70 10.98 5.56 0.06 -14.64 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.82 7.86 -51.93 -0.41 0.42 16 26 H 0.08 1.49 7.20 -51.93 -0.37 1.12 16 27 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.26 8.47 8.73 -40.82 -0.36 8.11 16 LS Contribution 261.56 15.07 3.94 3.94 Total: -1.00 -33.96 261.56 -6.26 -40.23 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -5.41 Total: -4.61 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.80 Total: -8.93 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.27 Total: -40.72 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.06 Total: -14.64 kcal Atomic # 14 Polarization: 29.04 SS G_CDS: -4.31 Total: 24.73 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.96 -6.26 -40.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323097.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.119 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds