Wall clock time and date at job start Mon Mar 30 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46465 * 2 1 4 4 N 1.46496 * 109.47061 * 119.99719 * 2 1 3 5 5 C 1.34411 * 124.35246 * 297.46728 * 4 2 1 6 6 O 1.21283 * 124.94242 * 0.36635 * 5 4 2 7 7 C 1.51286 * 110.11911 * 180.38919 * 5 4 2 8 8 C 1.54636 * 104.19279 * 16.25119 * 7 5 4 9 9 C 1.46762 * 124.34668 * 117.44473 * 4 2 1 10 10 H 1.09002 * 110.25029 * 43.92106 * 9 4 2 11 11 C 1.53002 * 110.24830 * 282.00491 * 9 4 2 12 12 C 1.50699 * 109.47148 * 66.22182 * 11 9 4 13 13 H 1.08001 * 119.99724 * 5.36530 * 12 11 9 14 14 C 1.37871 * 120.00142 * 185.37054 * 12 11 9 15 15 N 1.31513 * 120.00448 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 120.00020 * 359.97438 * 14 12 11 17 17 H 1.48491 * 109.47335 * 89.99635 * 16 14 12 18 18 H 1.48498 * 109.47174 * 210.00121 * 16 14 12 19 19 H 1.48506 * 109.46534 * 330.00002 * 16 14 12 20 20 H 1.09003 * 109.47300 * 299.99756 * 1 2 3 21 21 H 1.08998 * 109.47716 * 60.00436 * 1 2 3 22 22 H 1.09007 * 109.46956 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47300 * 240.00244 * 2 1 3 24 24 H 1.09004 * 109.46453 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47462 * 299.99778 * 3 2 1 26 26 H 1.08997 * 109.47598 * 60.00119 * 3 2 1 27 27 H 1.09000 * 110.48849 * 134.93249 * 7 5 4 28 28 H 1.08997 * 110.48764 * 257.44536 * 7 5 4 29 29 H 1.08999 * 110.96449 * 217.08687 * 8 7 5 30 30 H 1.08994 * 110.96411 * 93.32460 * 8 7 5 31 31 H 1.09000 * 109.46998 * 186.21896 * 11 9 4 32 32 H 1.09003 * 109.46716 * 306.21760 * 11 9 4 33 33 H 0.96996 * 120.00127 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7886 -0.2806 2.4555 6 8 1.1470 0.7026 2.7598 7 6 2.4472 -1.2238 3.4380 8 6 3.4532 -2.0244 2.5790 9 6 2.8209 -1.9191 1.1734 10 1 3.5986 -1.8477 0.4130 11 6 1.9267 -3.1308 0.9030 12 6 1.3637 -3.0383 -0.4919 13 1 1.6853 -2.2468 -1.1526 14 6 0.4382 -3.9640 -0.9245 15 7 -0.0535 -3.8831 -2.1416 16 14 -0.1176 -5.3334 0.2181 17 1 -1.3006 -4.8815 0.9935 18 1 -0.4786 -6.5306 -0.5830 19 1 0.9848 -5.6767 1.1520 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1299 1.4425 -0.0005 25 1 1.6765 1.9564 -0.8900 26 1 1.6765 1.9564 0.8899 27 1 2.9691 -0.6633 4.2136 28 1 1.7073 -1.8896 3.8823 29 1 3.5058 -3.0628 2.9062 30 1 4.4392 -1.5602 2.5990 31 1 2.5139 -4.0441 0.9979 32 1 1.1096 -3.1475 1.6243 33 1 -0.7044 -4.5346 -2.4461 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261330510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:54 Heat of formation + Delta-G solvation = -47.394959 kcal Electronic energy + Delta-G solvation = -14936.230170 eV Core-core repulsion = 12575.454861 eV Total energy + Delta-G solvation = -2360.775309 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.05133 -36.17343 -34.47701 -32.83864 -29.97362 -29.40832 -26.54184 -25.82724 -22.48446 -21.66405 -20.40649 -18.17667 -16.78649 -16.00129 -15.46935 -14.81975 -14.13989 -13.59110 -13.35785 -13.11034 -13.00699 -12.58864 -12.32770 -11.99004 -11.77786 -11.58647 -11.33501 -11.11653 -10.82056 -10.64659 -10.42813 -10.35007 -10.08418 -9.72697 -9.23883 -8.88619 -8.59683 -7.90905 -6.10348 -4.08296 3.19670 3.25914 3.34365 3.35378 3.71097 4.38960 4.86422 4.98729 5.24678 5.26556 5.49064 5.64190 5.72962 5.90089 5.94214 6.05365 6.18941 6.19843 6.21724 6.35127 6.44003 6.52359 6.55092 6.75912 7.00564 7.08288 7.18242 7.45571 7.67897 7.95360 8.43671 8.84315 8.92121 9.51407 11.01887 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.012698 C = 0.010490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.634914 B = 2204.595404 C = 2668.542098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 C -0.166 4.166 4 N -0.584 5.584 5 C 0.513 3.487 6 O -0.554 6.554 7 C -0.155 4.155 8 C -0.132 4.132 9 C 0.141 3.859 10 H 0.079 0.921 11 C -0.023 4.023 12 C -0.516 4.516 13 H 0.078 0.922 14 C 0.071 3.929 15 N -0.899 5.899 16 Si 0.874 3.126 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.267 1.267 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.016 0.984 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 3.764 6.793 9.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 C -0.224 4.224 4 N -0.316 5.316 5 C 0.300 3.700 6 O -0.434 6.434 7 C -0.195 4.195 8 C -0.170 4.170 9 C 0.037 3.963 10 H 0.097 0.903 11 C -0.061 4.061 12 C -0.554 4.554 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.702 3.298 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.191 1.191 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.097 0.903 23 H 0.116 0.884 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.035 0.965 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.436 4.215 6.723 9.618 hybrid contribution -0.469 -0.959 0.411 1.144 sum 4.967 3.257 7.134 9.283 Atomic orbital electron populations 1.22090 0.94928 1.03880 1.00862 1.20886 0.94792 0.91078 0.87394 1.22223 1.00485 0.97193 1.02543 1.48320 1.52103 1.25591 1.05582 1.20762 0.79984 0.84945 0.84292 1.90615 1.42500 1.28388 1.81874 1.22300 0.99913 0.98965 0.98298 1.22695 0.97869 1.01187 0.95221 1.21756 0.93137 0.85647 0.95727 0.90276 1.19996 0.95121 0.92633 0.98324 1.21051 1.23933 1.13724 0.96690 0.90416 1.24964 0.95898 0.97399 0.94832 1.69890 1.30309 1.36487 1.17060 0.86868 0.79474 0.82208 0.81251 1.20445 1.21476 1.19124 0.92821 0.92803 0.90295 0.88362 0.93297 0.92097 0.91475 0.89169 0.88475 0.89604 0.90907 0.95559 0.96525 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 9.19 37.16 0.34 -2.89 16 2 C 0.16 3.07 2.54 -67.93 -0.17 2.90 16 3 C -0.17 -2.75 9.16 37.16 0.34 -2.41 16 4 N -0.58 -11.14 2.44 -157.37 -0.38 -11.52 16 5 C 0.51 9.77 7.41 -10.86 -0.08 9.69 16 6 O -0.55 -12.01 15.12 5.56 0.08 -11.93 16 7 C -0.15 -2.30 6.86 -26.74 -0.18 -2.49 16 8 C -0.13 -1.85 6.70 -25.09 -0.17 -2.01 16 9 C 0.14 2.54 3.08 -67.01 -0.21 2.33 16 10 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 11 C -0.02 -0.49 3.65 -27.88 -0.10 -0.59 16 12 C -0.52 -13.29 7.91 -34.44 -0.27 -13.56 16 13 H 0.08 2.12 5.70 -52.49 -0.30 1.82 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -26.26 13.96 55.43 0.77 -25.49 16 16 Si 0.87 20.90 27.37 -169.99 -4.65 16.24 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.05 6.70 56.52 0.38 -5.67 16 20 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 21 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.08 1.84 7.25 -51.92 -0.38 1.47 16 23 H 0.10 2.00 6.00 -51.93 -0.31 1.69 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.21 6.63 -51.93 -0.34 0.86 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.09 1.10 7.89 -51.93 -0.41 0.69 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.56 7.57 -51.93 -0.39 0.17 16 32 H 0.02 0.37 7.27 -51.93 -0.38 -0.01 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 262.32 15.07 3.95 3.95 Total: -1.00 -29.75 262.32 -5.82 -35.56 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.99 Total: 0.38 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.60 Total: -7.21 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.39 Total: -37.01 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.65 Total: 16.24 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.75 -5.82 -35.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261330510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.831 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds