Wall clock time and date at job start Mon Mar 30 2020 02:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46987 * 2 1 4 4 C 1.53000 * 109.46779 * 119.99350 * 2 1 3 5 5 N 1.46500 * 109.46858 * 175.00297 * 4 2 1 6 6 C 1.46768 * 124.34912 * 269.72821 * 5 4 2 7 7 C 1.54476 * 105.47356 * 163.25066 * 6 5 4 8 8 C 1.54628 * 101.76724 * 25.41305 * 7 6 5 9 9 H 1.09006 * 110.48485 * 93.88228 * 8 7 6 10 10 C 1.50704 * 110.48747 * 216.52293 * 8 7 6 11 11 H 1.08002 * 119.99802 * 356.23338 * 10 8 7 12 12 C 1.37876 * 119.99980 * 176.22666 * 10 8 7 13 13 N 1.31516 * 119.99693 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00289 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47073 * 59.99978 * 14 12 10 16 16 H 1.48489 * 109.47280 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46814 * 300.00701 * 14 12 10 18 18 C 1.34424 * 124.35300 * 90.02712 * 5 4 2 19 19 O 1.21281 * 124.93604 * 0.16049 * 18 5 4 20 20 H 1.09003 * 109.47050 * 300.00464 * 1 2 3 21 21 H 1.08996 * 109.46652 * 60.00076 * 1 2 3 22 22 H 1.08998 * 109.46743 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47474 * 239.99768 * 2 1 3 24 24 H 1.08999 * 109.47203 * 59.99603 * 3 2 1 25 25 H 1.08995 * 109.47355 * 179.97438 * 3 2 1 26 26 H 1.09007 * 109.46922 * 299.99392 * 3 2 1 27 27 H 1.08996 * 109.47159 * 55.00594 * 4 2 1 28 28 H 1.09000 * 109.47626 * 295.00344 * 4 2 1 29 29 H 1.09003 * 110.24577 * 282.24633 * 6 5 4 30 30 H 1.08999 * 110.24371 * 44.25013 * 6 5 4 31 31 H 1.09008 * 110.97014 * 267.29699 * 7 6 5 32 32 H 1.08999 * 111.00358 * 143.54909 * 7 6 5 33 33 H 0.97007 * 119.99873 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.2258 -1.9514 0.5897 7 6 5.6681 -1.4425 0.3722 8 6 5.7779 -0.3370 1.4478 9 1 6.2132 -0.7376 2.3634 10 6 6.5975 0.8188 0.9344 11 1 7.0609 0.7617 -0.0394 12 6 6.7555 1.9492 1.7079 13 7 6.1914 2.0184 2.8940 14 14 7.7707 3.3822 1.0714 15 1 7.1731 3.8909 -0.1893 16 1 7.7862 4.4669 2.0854 17 1 9.1605 2.9276 0.8121 18 6 4.3471 0.0927 1.6856 19 8 4.0129 1.1172 2.2421 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8935 -0.5139 -0.8899 24 1 1.6766 1.9564 0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6054 -1.7197 1.2953 28 1 1.7516 -0.1582 2.1371 29 1 4.2254 -2.8055 1.2670 30 1 3.7745 -2.2250 -0.3640 31 1 5.7883 -1.0266 -0.6282 32 1 6.3936 -2.2357 0.5525 33 1 6.3022 2.8139 3.4381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261334212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:43 Heat of formation + Delta-G solvation = -40.377623 kcal Electronic energy + Delta-G solvation = -14820.311789 eV Core-core repulsion = 12459.840775 eV Total energy + Delta-G solvation = -2360.471014 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.18606 -35.63057 -34.69034 -32.71768 -30.42924 -27.02316 -26.69623 -25.57558 -23.59919 -20.67739 -19.73545 -18.33236 -16.27550 -15.56306 -15.31193 -14.58891 -14.25106 -13.90332 -13.30320 -12.77729 -12.37372 -12.07548 -11.96141 -11.82810 -11.71212 -11.42713 -11.19500 -10.78146 -10.71964 -10.50969 -10.44760 -10.27321 -10.17128 -9.45514 -9.11864 -8.32719 -7.96483 -7.59527 -5.84192 -3.92708 3.38964 3.44191 3.45293 4.04505 4.31485 4.55511 5.17823 5.27637 5.42937 5.46362 5.61992 5.69780 5.77024 5.91462 5.98062 6.00741 6.14884 6.20059 6.29730 6.37377 6.46408 6.59383 6.68049 6.76434 6.96105 7.03661 7.56051 7.70689 7.97003 8.23865 8.49722 9.01559 9.68526 9.92686 11.19740 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.010876 C = 0.009523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.505721 B = 2573.891946 C = 2939.542595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.140 4.140 4 C 0.135 3.865 5 N -0.647 5.647 6 C 0.112 3.888 7 C -0.128 4.128 8 C 0.027 3.973 9 H 0.054 0.946 10 C -0.538 4.538 11 H 0.059 0.941 12 C 0.074 3.926 13 N -0.834 5.834 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.516 3.484 19 O -0.487 6.487 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 -6.832 -5.032 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 C -0.197 4.197 4 C 0.011 3.989 5 N -0.387 5.387 6 C -0.012 4.012 7 C -0.166 4.166 8 C 0.005 3.995 9 H 0.072 0.928 10 C -0.576 4.576 11 H 0.078 0.922 12 C -0.134 4.134 13 N -0.467 5.467 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.203 1.203 18 C 0.306 3.694 19 O -0.357 6.357 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.600 -6.101 -4.493 10.732 hybrid contribution 0.383 0.742 -0.417 0.933 sum -7.217 -5.360 -4.909 10.243 Atomic orbital electron populations 1.21782 0.95594 1.01041 1.01617 1.21533 0.94811 0.97780 0.99035 1.21775 1.02912 0.94683 1.00367 1.21177 0.81097 0.99050 0.97534 1.48819 1.04452 1.23233 1.62190 1.21816 0.93770 0.89099 0.96481 1.22645 0.93534 0.99194 1.01252 1.19398 0.90792 0.94176 0.95094 0.92800 1.20636 1.33012 1.00426 1.03532 0.92243 1.25017 0.95123 0.98296 0.94973 1.70094 1.39263 1.28022 1.09354 0.86735 0.80615 0.82392 0.78631 1.20375 1.21356 1.20299 1.22239 0.88872 0.82331 0.76004 1.90625 1.81237 1.23703 1.40116 0.92744 0.92946 0.93120 0.91705 0.92813 0.91275 0.94169 0.92199 0.91051 0.93192 0.92756 0.91290 0.91566 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 2 C -0.11 -1.76 3.13 -90.62 -0.28 -2.04 16 3 C -0.14 -2.62 8.34 37.16 0.31 -2.31 16 4 C 0.13 2.30 5.39 -4.04 -0.02 2.28 16 5 N -0.65 -13.10 2.78 -172.41 -0.48 -13.58 16 6 C 0.11 1.91 7.35 -3.12 -0.02 1.89 16 7 C -0.13 -2.48 6.68 -25.10 -0.17 -2.65 16 8 C 0.03 0.68 2.88 -91.78 -0.26 0.41 16 9 H 0.05 1.45 8.14 -51.93 -0.42 1.03 16 10 C -0.54 -15.07 8.54 -34.44 -0.29 -15.37 16 11 H 0.06 1.61 7.63 -52.49 -0.40 1.21 16 12 C 0.07 2.14 5.14 -17.82 -0.09 2.05 16 13 N -0.83 -25.48 10.81 55.43 0.60 -24.88 16 14 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.52 13.14 5.94 -10.86 -0.06 13.07 16 19 O -0.49 -14.21 13.57 5.56 0.08 -14.14 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.58 6.13 -51.93 -0.32 1.26 16 26 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.34 7.79 -51.92 -0.40 0.94 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 267.95 15.07 4.04 4.04 Total: -1.00 -31.93 267.95 -6.67 -38.60 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -5.32 Total: -3.00 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.56 Total: -4.10 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.12 Total: -38.46 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.08 Total: -14.14 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.93 -6.67 -38.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.780 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds