Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46987 * 2 1 4 4 C 1.53000 * 109.46779 * 119.99350 * 2 1 3 5 5 N 1.46500 * 109.46858 * 175.00297 * 4 2 1 6 6 C 1.46768 * 124.34912 * 269.72821 * 5 4 2 7 7 C 1.54476 * 105.47356 * 163.25066 * 6 5 4 8 8 C 1.54628 * 101.76724 * 25.41305 * 7 6 5 9 9 H 1.09006 * 110.48485 * 93.88228 * 8 7 6 10 10 C 1.50704 * 110.48747 * 216.52293 * 8 7 6 11 11 H 1.08002 * 119.99802 * 356.23338 * 10 8 7 12 12 C 1.37876 * 119.99980 * 176.22666 * 10 8 7 13 13 N 1.31516 * 119.99693 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00289 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47073 * 59.99978 * 14 12 10 16 16 H 1.48489 * 109.47280 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46814 * 300.00701 * 14 12 10 18 18 C 1.34424 * 124.35300 * 90.02712 * 5 4 2 19 19 O 1.21281 * 124.93604 * 0.16049 * 18 5 4 20 20 H 1.09003 * 109.47050 * 300.00464 * 1 2 3 21 21 H 1.08996 * 109.46652 * 60.00076 * 1 2 3 22 22 H 1.08998 * 109.46743 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47474 * 239.99768 * 2 1 3 24 24 H 1.08999 * 109.47203 * 59.99603 * 3 2 1 25 25 H 1.08995 * 109.47355 * 179.97438 * 3 2 1 26 26 H 1.09007 * 109.46922 * 299.99392 * 3 2 1 27 27 H 1.08996 * 109.47159 * 55.00594 * 4 2 1 28 28 H 1.09000 * 109.47626 * 295.00344 * 4 2 1 29 29 H 1.09003 * 110.24577 * 282.24633 * 6 5 4 30 30 H 1.08999 * 110.24371 * 44.25013 * 6 5 4 31 31 H 1.09008 * 110.97014 * 267.29699 * 7 6 5 32 32 H 1.08999 * 111.00358 * 143.54909 * 7 6 5 33 33 H 0.97007 * 119.99873 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.2258 -1.9514 0.5897 7 6 5.6681 -1.4425 0.3722 8 6 5.7779 -0.3370 1.4478 9 1 6.2132 -0.7376 2.3634 10 6 6.5975 0.8188 0.9344 11 1 7.0609 0.7617 -0.0394 12 6 6.7555 1.9492 1.7079 13 7 6.1914 2.0184 2.8940 14 14 7.7707 3.3822 1.0714 15 1 7.1731 3.8909 -0.1893 16 1 7.7862 4.4669 2.0854 17 1 9.1605 2.9276 0.8121 18 6 4.3471 0.0927 1.6856 19 8 4.0129 1.1172 2.2421 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8935 -0.5139 -0.8899 24 1 1.6766 1.9564 0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6054 -1.7197 1.2953 28 1 1.7516 -0.1582 2.1371 29 1 4.2254 -2.8055 1.2670 30 1 3.7745 -2.2250 -0.3640 31 1 5.7883 -1.0266 -0.6282 32 1 6.3936 -2.2357 0.5525 33 1 6.3022 2.8139 3.4381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261334212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = -60.907826 kcal Electronic energy + Delta-G solvation = -14821.202045 eV Core-core repulsion = 12459.840775 eV Total energy + Delta-G solvation = -2361.361271 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.90784 -37.14585 -36.47010 -34.73210 -32.15835 -28.79505 -28.03673 -27.07335 -25.51269 -22.24533 -21.21420 -20.06718 -18.31645 -17.24600 -16.95941 -16.44062 -15.89483 -15.36436 -14.76073 -14.43390 -14.14072 -13.95185 -13.59755 -13.38844 -13.06314 -12.82032 -12.76334 -12.73239 -12.44031 -12.21939 -11.88071 -11.76577 -11.57297 -11.37496 -11.10008 -10.51672 -9.92122 -9.20832 -8.02591 -6.16324 1.38135 1.41453 1.48109 2.31798 2.50372 2.55633 3.28478 3.88271 4.03888 4.10973 4.20657 4.31625 4.39214 4.62838 4.66815 4.77786 4.82019 4.85931 4.92001 5.00579 5.10161 5.16183 5.22297 5.36267 5.45642 5.48725 5.61022 5.78102 6.16915 6.21803 6.59619 6.92088 7.48123 8.04958 9.00511 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.010876 C = 0.009523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.505721 B = 2573.891946 C = 2939.542595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.130 3.870 5 N -0.643 5.643 6 C 0.113 3.887 7 C -0.118 4.118 8 C 0.007 3.993 9 H 0.026 0.974 10 C -0.550 4.550 11 H 0.063 0.937 12 C 0.017 3.983 13 N -0.871 5.871 14 Si 0.950 3.050 15 H -0.276 1.276 16 H -0.290 1.290 17 H -0.260 1.260 18 C 0.507 3.493 19 O -0.539 6.539 20 H 0.048 0.952 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.032 0.968 25 H 0.021 0.979 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.348 -8.680 -7.007 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 C -0.192 4.192 4 C 0.008 3.992 5 N -0.380 5.380 6 C -0.010 4.010 7 C -0.155 4.155 8 C -0.014 4.014 9 H 0.043 0.957 10 C -0.588 4.588 11 H 0.081 0.919 12 C -0.187 4.187 13 N -0.506 5.506 14 Si 0.776 3.224 15 H -0.202 1.202 16 H -0.216 1.216 17 H -0.185 1.185 18 C 0.296 3.704 19 O -0.414 6.414 20 H 0.067 0.933 21 H 0.083 0.917 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.051 0.949 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.628 -8.010 -6.510 13.453 hybrid contribution 0.685 1.250 0.178 1.437 sum -7.942 -6.760 -6.332 12.201 Atomic orbital electron populations 1.21717 0.92537 1.02950 1.02030 1.21495 0.97228 0.95109 0.98591 1.21702 0.99695 0.97494 1.00302 1.21437 0.79086 1.01314 0.97382 1.48722 1.05728 1.22750 1.60838 1.22079 0.91756 0.88324 0.98800 1.22575 0.96254 0.97836 0.98878 1.19446 0.90726 0.95423 0.95851 0.95652 1.21090 1.32961 1.01365 1.03429 0.91908 1.25866 0.96350 1.01225 0.95225 1.70281 1.41198 1.28333 1.10779 0.85748 0.79795 0.79096 0.77781 1.20155 1.21566 1.18464 1.22134 0.89840 0.82425 0.75954 1.90581 1.82123 1.26074 1.42609 0.93255 0.91722 0.90434 0.90443 0.94893 0.96001 0.92172 0.87869 0.93522 0.90433 0.88914 0.91436 0.88950 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.19 71.98 0.66 -2.20 16 2 C -0.10 -3.02 3.13 -10.79 -0.03 -3.06 16 3 C -0.13 -5.03 8.34 71.98 0.60 -4.43 16 4 C 0.13 4.16 5.39 86.38 0.47 4.62 16 5 N -0.64 -25.10 2.78 -817.99 -2.27 -27.37 16 6 C 0.11 3.42 7.35 86.83 0.64 4.06 16 7 C -0.12 -4.32 6.68 31.65 0.21 -4.11 16 8 C 0.01 0.36 2.88 -11.55 -0.03 0.33 16 9 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 10 C -0.55 -31.48 8.54 25.60 0.22 -31.26 16 11 H 0.06 3.43 7.63 -2.91 -0.02 3.41 16 12 C 0.02 1.03 5.14 84.65 0.44 1.46 16 13 N -0.87 -55.64 10.81 21.45 0.23 -55.41 16 14 Si 0.95 46.42 29.54 68.60 2.03 48.45 16 15 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 16 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 17 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 18 C 0.51 26.41 5.94 87.89 0.52 26.93 16 19 O -0.54 -33.08 13.57 -3.03 -0.04 -33.12 16 20 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.02 1.00 6.13 -2.39 -0.01 0.98 16 26 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.05 1.73 7.93 -2.39 -0.02 1.71 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 2.48 7.79 -2.38 -0.02 2.47 16 32 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.25 15.62 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -73.80 267.95 4.69 -69.11 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.06 Total: 6.00 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 3.69 Total: -7.66 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -2.04 Total: -82.79 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.04 Total: -33.12 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -73.80 4.69 -69.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.205 kcal (2) G-P(sol) polarization free energy of solvation -73.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds