Wall clock time and date at job start Mon Mar 30 2020 02:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47103 * 2 1 4 4 C 1.50704 * 109.47173 * 119.99416 * 2 1 3 5 5 H 1.07993 * 119.99979 * 121.20434 * 4 2 1 6 6 C 1.37873 * 119.99849 * 301.20540 * 4 2 1 7 7 N 1.31519 * 119.99940 * 194.17332 * 6 4 2 8 8 Si 1.86797 * 120.00210 * 14.17706 * 6 4 2 9 9 H 1.48503 * 109.47502 * 84.53719 * 8 6 4 10 10 H 1.48501 * 109.47021 * 204.53481 * 8 6 4 11 11 H 1.48493 * 109.47152 * 324.53518 * 8 6 4 12 12 C 1.53001 * 109.47515 * 239.99758 * 2 1 3 13 13 N 1.46493 * 109.47109 * 59.99998 * 12 2 1 14 14 C 1.46770 * 124.34597 * 269.72972 * 13 12 2 15 15 C 1.54657 * 105.38275 * 162.85649 * 14 13 12 16 16 C 1.54632 * 101.68565 * 25.76117 * 15 14 13 17 17 C 1.34414 * 124.35564 * 90.02635 * 13 12 2 18 18 O 1.21288 * 124.93543 * 0.42781 * 17 13 12 19 19 H 1.09001 * 109.46827 * 60.00713 * 1 2 3 20 20 H 1.09002 * 109.47548 * 300.00351 * 1 2 3 21 21 H 1.09001 * 109.46741 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47379 * 69.48752 * 3 2 1 23 23 H 1.09003 * 109.47106 * 189.49446 * 3 2 1 24 24 H 1.09007 * 109.46689 * 309.49076 * 3 2 1 25 25 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47024 * 179.97438 * 12 2 1 27 27 H 1.08997 * 109.46519 * 299.99778 * 12 2 1 28 28 H 1.09004 * 110.24274 * 281.98243 * 14 13 12 29 29 H 1.08996 * 110.24568 * 43.98175 * 14 13 12 30 30 H 1.09003 * 111.19154 * 267.58934 * 15 14 13 31 31 H 1.09000 * 110.82898 * 143.77501 * 15 14 13 32 32 H 1.09000 * 110.48442 * 216.31245 * 16 15 14 33 33 H 1.08994 * 110.59869 * 93.72589 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6692 -1.5769 1.1317 6 6 1.6789 -0.2538 2.4826 7 7 2.3237 -0.6833 3.5454 8 14 0.2841 0.9746 2.6695 9 1 -1.0114 0.2499 2.7135 10 1 0.4652 1.7415 3.9282 11 1 0.2895 1.9091 1.5154 12 6 2.0401 -0.7213 -1.2492 13 7 1.5518 -0.0308 -2.4454 14 6 0.2891 -0.3439 -3.1248 15 6 -0.0103 0.8816 -4.0194 16 6 1.4080 1.4504 -4.2563 17 6 2.2052 0.9671 -3.0650 18 8 3.2782 1.4147 -2.7194 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8216 1.9052 0.9625 23 1 3.1167 1.4472 -0.1695 24 1 1.5449 2.0029 -0.7931 25 1 2.0748 -0.3624 4.4263 26 1 3.1300 -0.7208 -1.2493 27 1 1.6768 -1.7489 -1.2490 28 1 0.4010 -1.2408 -3.7341 29 1 -0.5085 -0.4803 -2.3945 30 1 -0.6388 1.6048 -3.4996 31 1 -0.4687 0.5729 -4.9589 32 1 1.3827 2.5398 -4.2820 33 1 1.8290 1.0576 -5.1818 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306338125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:48 Heat of formation + Delta-G solvation = -21.179350 kcal Electronic energy + Delta-G solvation = -14984.588443 eV Core-core repulsion = 12624.949928 eV Total energy + Delta-G solvation = -2359.638515 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.09552 -36.42693 -35.61219 -32.23054 -30.90553 -27.49603 -26.12149 -25.89122 -24.71774 -21.66882 -19.88053 -18.33776 -16.61142 -16.07098 -15.79919 -15.33833 -14.79864 -13.58902 -13.34485 -13.27351 -12.89726 -12.72754 -12.61323 -12.22051 -11.99468 -11.84874 -11.33731 -10.95766 -10.77159 -10.64241 -10.25707 -10.01667 -9.81407 -9.32466 -9.00857 -8.81331 -8.41613 -7.94608 -6.09597 -4.05695 3.03805 3.29292 3.38658 3.43361 3.56655 4.42365 4.58317 4.60634 4.89260 5.21487 5.22854 5.57048 5.63511 5.75869 5.79178 5.96304 5.98953 6.04772 6.21163 6.44466 6.56632 6.66648 6.77931 6.85297 6.90062 7.18117 7.33156 7.54754 7.71400 7.84197 8.49681 8.67083 8.94280 9.56009 11.03613 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.045739 B = 0.010650 C = 0.010102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.017817 B = 2628.470586 C = 2771.124294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.024 3.976 3 C -0.130 4.130 4 C -0.512 4.512 5 H 0.074 0.926 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.885 3.115 9 H -0.287 1.287 10 H -0.306 1.306 11 H -0.249 1.249 12 C 0.146 3.854 13 N -0.610 5.610 14 C 0.095 3.905 15 C -0.132 4.132 16 C -0.157 4.157 17 C 0.510 3.490 18 O -0.533 6.533 19 H 0.034 0.966 20 H 0.038 0.962 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.017 0.983 25 H 0.263 0.737 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 1.926 -14.341 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.023 3.977 3 C -0.188 4.188 4 C -0.550 4.550 5 H 0.092 0.908 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.718 3.282 9 H -0.215 1.215 10 H -0.235 1.235 11 H -0.175 1.175 12 C 0.026 3.974 13 N -0.343 5.343 14 C -0.029 4.029 15 C -0.170 4.170 16 C -0.197 4.197 17 C 0.297 3.703 18 O -0.410 6.410 19 H 0.053 0.947 20 H 0.056 0.944 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.036 0.964 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.366 2.101 -13.883 15.417 hybrid contribution -0.927 0.546 0.341 1.129 sum -7.293 2.647 -13.542 15.607 Atomic orbital electron populations 1.22414 0.99113 1.00094 0.98715 1.18846 0.91493 0.93558 0.93839 1.22172 1.00475 0.97178 0.98927 1.20753 1.31473 1.14517 0.88249 0.90802 1.24959 0.96164 0.95746 0.95831 1.69964 1.39301 1.45081 0.98722 0.87291 0.82629 0.82298 0.75984 1.21501 1.23480 1.17497 1.21593 0.99272 0.94661 0.81888 1.48439 1.21365 1.36073 1.28443 1.22213 0.87476 0.97356 0.95839 1.22607 0.96415 0.97634 1.00340 1.22330 0.95958 1.02915 0.98521 1.20730 0.85452 0.79844 0.84246 1.90711 1.21533 1.59580 1.69222 0.94731 0.94369 0.93292 0.93446 0.93134 0.96391 0.92674 0.90538 0.91169 0.91607 0.89820 0.90222 0.89716 0.88700 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 6.80 37.16 0.25 -2.83 16 2 C 0.02 0.56 0.57 -155.66 -0.09 0.48 16 3 C -0.13 -3.11 6.55 37.16 0.24 -2.87 16 4 C -0.51 -14.17 8.62 -34.44 -0.30 -14.47 16 5 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 6 C 0.08 2.17 5.32 -17.82 -0.09 2.07 16 7 N -0.89 -27.43 13.96 55.43 0.77 -26.66 16 8 Si 0.89 22.17 22.79 -169.99 -3.87 18.30 16 9 H -0.29 -7.04 7.10 56.52 0.40 -6.63 16 10 H -0.31 -7.82 7.11 56.52 0.40 -7.42 16 11 H -0.25 -5.91 4.65 56.52 0.26 -5.64 16 12 C 0.15 2.94 4.85 -4.04 -0.02 2.92 16 13 N -0.61 -10.32 2.38 -172.31 -0.41 -10.73 16 14 C 0.09 1.16 6.65 -3.02 -0.02 1.14 16 15 C -0.13 -1.30 7.19 -25.00 -0.18 -1.48 16 16 C -0.16 -1.87 6.86 -26.74 -0.18 -2.06 16 17 C 0.51 8.98 6.59 -10.86 -0.07 8.91 16 18 O -0.53 -11.70 16.38 5.55 0.09 -11.61 16 19 H 0.03 0.63 5.76 -51.93 -0.30 0.33 16 20 H 0.04 0.86 2.26 -51.93 -0.12 0.75 16 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.05 1.18 4.30 -51.93 -0.22 0.95 16 23 H 0.05 1.27 7.64 -51.93 -0.40 0.87 16 24 H 0.02 0.39 6.99 -51.92 -0.36 0.03 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.08 1.68 7.92 -51.93 -0.41 1.26 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.04 5.98 -51.93 -0.31 0.73 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 248.48 15.07 3.74 3.74 Total: -1.00 -32.53 248.48 -4.91 -37.43 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.77 Total: -2.29 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -0.46 Total: -8.18 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.36 Total: -37.39 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -3.87 Total: 18.30 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.53 -4.91 -37.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306338125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.255 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds