Wall clock time and date at job start Mon Mar 30 2020 02:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47103 * 2 1 4 4 C 1.50704 * 109.47173 * 119.99416 * 2 1 3 5 5 H 1.07993 * 119.99979 * 121.20434 * 4 2 1 6 6 C 1.37873 * 119.99849 * 301.20540 * 4 2 1 7 7 N 1.31519 * 119.99940 * 194.17332 * 6 4 2 8 8 Si 1.86797 * 120.00210 * 14.17706 * 6 4 2 9 9 H 1.48503 * 109.47502 * 84.53719 * 8 6 4 10 10 H 1.48501 * 109.47021 * 204.53481 * 8 6 4 11 11 H 1.48493 * 109.47152 * 324.53518 * 8 6 4 12 12 C 1.53001 * 109.47515 * 239.99758 * 2 1 3 13 13 N 1.46493 * 109.47109 * 59.99998 * 12 2 1 14 14 C 1.46770 * 124.34597 * 269.72972 * 13 12 2 15 15 C 1.54657 * 105.38275 * 162.85649 * 14 13 12 16 16 C 1.54632 * 101.68565 * 25.76117 * 15 14 13 17 17 C 1.34414 * 124.35564 * 90.02635 * 13 12 2 18 18 O 1.21288 * 124.93543 * 0.42781 * 17 13 12 19 19 H 1.09001 * 109.46827 * 60.00713 * 1 2 3 20 20 H 1.09002 * 109.47548 * 300.00351 * 1 2 3 21 21 H 1.09001 * 109.46741 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47379 * 69.48752 * 3 2 1 23 23 H 1.09003 * 109.47106 * 189.49446 * 3 2 1 24 24 H 1.09007 * 109.46689 * 309.49076 * 3 2 1 25 25 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47024 * 179.97438 * 12 2 1 27 27 H 1.08997 * 109.46519 * 299.99778 * 12 2 1 28 28 H 1.09004 * 110.24274 * 281.98243 * 14 13 12 29 29 H 1.08996 * 110.24568 * 43.98175 * 14 13 12 30 30 H 1.09003 * 111.19154 * 267.58934 * 15 14 13 31 31 H 1.09000 * 110.82898 * 143.77501 * 15 14 13 32 32 H 1.09000 * 110.48442 * 216.31245 * 16 15 14 33 33 H 1.08994 * 110.59869 * 93.72589 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6692 -1.5769 1.1317 6 6 1.6789 -0.2538 2.4826 7 7 2.3237 -0.6833 3.5454 8 14 0.2841 0.9746 2.6695 9 1 -1.0114 0.2499 2.7135 10 1 0.4652 1.7415 3.9282 11 1 0.2895 1.9091 1.5154 12 6 2.0401 -0.7213 -1.2492 13 7 1.5518 -0.0308 -2.4454 14 6 0.2891 -0.3439 -3.1248 15 6 -0.0103 0.8816 -4.0194 16 6 1.4080 1.4504 -4.2563 17 6 2.2052 0.9671 -3.0650 18 8 3.2782 1.4147 -2.7194 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8216 1.9052 0.9625 23 1 3.1167 1.4472 -0.1695 24 1 1.5449 2.0029 -0.7931 25 1 2.0748 -0.3624 4.4263 26 1 3.1300 -0.7208 -1.2493 27 1 1.6768 -1.7489 -1.2490 28 1 0.4010 -1.2408 -3.7341 29 1 -0.5085 -0.4803 -2.3945 30 1 -0.6388 1.6048 -3.4996 31 1 -0.4687 0.5729 -4.9589 32 1 1.3827 2.5398 -4.2820 33 1 1.8290 1.0576 -5.1818 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306338125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:48 Heat of formation + Delta-G solvation = -44.323995 kcal Electronic energy + Delta-G solvation = -14985.592070 eV Core-core repulsion = 12624.949928 eV Total energy + Delta-G solvation = -2360.642142 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.39357 -38.13594 -37.00578 -34.14943 -32.40688 -28.69672 -27.75561 -27.49936 -26.80125 -22.60763 -21.54934 -19.84646 -18.21170 -17.86256 -17.14619 -16.99410 -16.21930 -15.03638 -14.94920 -14.76317 -14.55553 -14.45368 -13.94397 -13.80097 -13.59081 -13.21469 -12.67277 -12.48786 -12.30791 -12.15641 -11.99485 -11.72216 -11.60844 -11.08137 -10.69898 -10.61383 -10.53631 -9.41330 -8.32949 -6.32843 1.30607 1.35141 1.45471 1.72585 2.28166 2.32143 3.03058 3.56230 3.74414 4.12783 4.18482 4.24860 4.35500 4.43503 4.70124 4.74558 4.77774 4.80495 4.85526 4.94236 4.98010 5.06416 5.15186 5.18541 5.30606 5.42355 5.61662 5.74018 5.82591 6.29388 6.41294 6.71270 7.30783 7.34821 8.83995 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.045739 B = 0.010650 C = 0.010102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.017817 B = 2628.470586 C = 2771.124294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.021 3.979 3 C -0.120 4.120 4 C -0.513 4.513 5 H 0.034 0.966 6 C 0.017 3.983 7 N -0.945 5.945 8 Si 0.946 3.054 9 H -0.271 1.271 10 H -0.316 1.316 11 H -0.226 1.226 12 C 0.155 3.845 13 N -0.614 5.614 14 C 0.084 3.916 15 C -0.117 4.117 16 C -0.146 4.146 17 C 0.491 3.509 18 O -0.591 6.591 19 H 0.069 0.931 20 H 0.026 0.974 21 H 0.060 0.940 22 H 0.036 0.964 23 H 0.023 0.977 24 H 0.036 0.964 25 H 0.264 0.736 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.068 2.747 -17.012 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.019 3.981 3 C -0.177 4.177 4 C -0.552 4.552 5 H 0.052 0.948 6 C -0.180 4.180 7 N -0.584 5.584 8 Si 0.776 3.224 9 H -0.198 1.198 10 H -0.246 1.246 11 H -0.150 1.150 12 C 0.033 3.967 13 N -0.346 5.346 14 C -0.037 4.037 15 C -0.155 4.155 16 C -0.186 4.186 17 C 0.281 3.719 18 O -0.473 6.473 19 H 0.088 0.912 20 H 0.044 0.956 21 H 0.079 0.921 22 H 0.054 0.946 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.485 2.906 -16.608 19.345 hybrid contribution 0.141 0.201 1.131 1.157 sum -9.344 3.108 -15.477 18.344 Atomic orbital electron populations 1.22302 0.96417 1.01329 0.99734 1.18827 0.93564 0.92633 0.93087 1.22046 0.99010 0.97901 0.98745 1.21075 1.30274 1.13391 0.90434 0.94751 1.25815 0.98652 0.98096 0.95450 1.70112 1.41465 1.47490 0.99374 0.86295 0.79703 0.80358 0.76079 1.19785 1.24559 1.15049 1.21158 0.97465 0.95447 0.82637 1.48537 1.23163 1.35594 1.27275 1.22593 0.85002 0.99771 0.96369 1.22675 0.94986 0.96147 1.01653 1.22357 0.96321 1.03536 0.96341 1.21882 0.85109 0.79341 0.85575 1.90679 1.24224 1.61286 1.71081 0.91222 0.95568 0.92123 0.94567 0.95804 0.94530 0.92718 0.93881 0.89782 0.89162 0.89459 0.89691 0.85658 0.87784 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.48 6.80 71.98 0.49 -4.99 16 2 C 0.02 0.94 0.57 -52.93 -0.03 0.91 16 3 C -0.12 -5.67 6.55 71.98 0.47 -5.20 16 4 C -0.51 -29.21 8.62 25.60 0.22 -28.99 16 5 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 6 C 0.02 1.01 5.32 84.65 0.45 1.46 16 7 N -0.94 -60.08 13.96 21.45 0.30 -59.78 16 8 Si 0.95 45.51 22.79 68.60 1.56 47.07 16 9 H -0.27 -12.28 7.10 99.48 0.71 -11.57 16 10 H -0.32 -15.62 7.11 99.48 0.71 -14.92 16 11 H -0.23 -9.94 4.65 99.48 0.46 -9.48 16 12 C 0.16 6.21 4.85 86.38 0.42 6.63 16 13 N -0.61 -19.35 2.38 -817.64 -1.95 -21.30 16 14 C 0.08 1.66 6.65 86.89 0.58 2.24 16 15 C -0.12 -1.61 7.19 31.71 0.23 -1.38 16 16 C -0.15 -2.86 6.86 30.59 0.21 -2.65 16 17 C 0.49 16.44 6.59 87.90 0.58 17.01 16 18 O -0.59 -26.22 16.38 -3.05 -0.05 -26.27 16 19 H 0.07 2.21 5.76 -2.39 -0.01 2.19 16 20 H 0.03 1.09 2.26 -2.39 -0.01 1.08 16 21 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.04 1.76 4.30 -2.39 -0.01 1.75 16 23 H 0.02 1.21 7.64 -2.39 -0.02 1.19 16 24 H 0.04 1.56 6.99 -2.38 -0.02 1.54 16 25 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 26 H 0.04 1.97 7.92 -2.39 -0.02 1.96 16 27 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.09 1.70 5.98 -2.39 -0.01 1.69 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.13 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -74.69 248.48 4.33 -70.37 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 0.85 Total: 4.87 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 3.61 Total: -14.95 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -1.65 Total: -81.08 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.27 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.56 Total: 47.07 kcal Total: -74.69 4.33 -70.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306338125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.042 kcal (2) G-P(sol) polarization free energy of solvation -74.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds