Wall clock time and date at job start Mon Mar 30 2020 02:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50695 * 120.00120 * 2 1 4 4 C 1.30999 * 119.99934 * 179.97438 * 2 1 3 5 5 C 1.50704 * 120.00256 * 353.79547 * 4 2 1 6 6 N 1.46901 * 109.46924 * 236.01818 * 5 4 2 7 7 C 1.47485 * 110.99699 * 169.99799 * 6 5 4 8 8 C 1.53512 * 87.99392 * 138.67078 * 7 6 5 9 9 O 1.42899 * 114.17146 * 87.65158 * 8 7 6 10 10 C 1.50703 * 114.16987 * 220.35594 * 8 7 6 11 11 H 1.07995 * 120.00019 * 359.97438 * 10 8 7 12 12 C 1.37878 * 120.00077 * 180.02562 * 10 8 7 13 13 N 1.31522 * 120.00135 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 120.00009 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47193 * 90.00058 * 14 12 10 16 16 H 1.48497 * 109.47174 * 210.00020 * 14 12 10 17 17 H 1.48499 * 109.46959 * 329.99857 * 14 12 10 18 18 C 1.47487 * 110.99726 * 265.96674 * 6 5 4 19 19 H 1.08994 * 109.47066 * 265.04687 * 1 2 3 20 20 H 1.08992 * 109.46686 * 25.05218 * 1 2 3 21 21 H 1.09004 * 109.46996 * 145.04654 * 1 2 3 22 22 H 1.08998 * 109.47451 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47141 * 300.00272 * 3 2 1 24 24 H 1.09006 * 109.47179 * 59.99987 * 3 2 1 25 25 H 1.08000 * 120.00223 * 173.78857 * 4 2 1 26 26 H 1.08999 * 109.47436 * 116.01229 * 5 4 2 27 27 H 1.09004 * 109.46968 * 356.01438 * 5 4 2 28 28 H 1.09002 * 113.47266 * 253.46738 * 7 6 5 29 29 H 1.08997 * 113.47780 * 23.87440 * 7 6 5 30 30 H 0.96708 * 114.00272 * 179.97438 * 9 8 7 31 31 H 0.96990 * 120.00040 * 179.97438 * 13 12 10 32 32 H 1.08998 * 113.47535 * 336.06483 * 18 6 5 33 33 H 1.08993 * 113.47197 * 106.47183 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4152 -2.4358 0.1421 6 7 1.9485 -3.1842 1.2882 7 6 1.0948 -4.3443 1.6052 8 6 2.3770 -5.1576 1.8315 9 8 2.8924 -5.0794 3.1620 10 6 2.3180 -6.5646 1.2947 11 1 1.4241 -6.9176 0.8021 12 6 3.4049 -7.4015 1.4333 13 7 4.4931 -6.9721 2.0345 14 14 3.3321 -9.1452 0.7673 15 1 3.8144 -9.1592 -0.6371 16 1 4.1930 -10.0276 1.5952 17 1 1.9309 -9.6349 0.8145 18 6 2.9886 -4.1376 0.8590 19 1 -0.3633 -0.0887 1.0238 20 1 -0.3632 0.9309 -0.4351 21 1 -0.3633 -0.8423 -0.5888 22 1 3.3322 1.1059 0.0005 23 1 1.9972 1.8766 -0.8899 24 1 1.9972 1.8767 0.8900 25 1 3.2373 -1.1373 -0.1007 26 1 1.5378 -3.0259 -0.7661 27 1 0.3565 -2.2315 0.3025 28 1 0.4997 -4.2115 2.5088 29 1 0.5034 -4.6926 0.7585 30 1 3.6999 -5.5929 3.3018 31 1 5.2575 -7.5609 2.1323 32 1 2.9033 -4.4313 -0.1872 33 1 3.9985 -3.8291 1.1291 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306486358.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:45 Heat of formation + Delta-G solvation = -24.685326 kcal Electronic energy + Delta-G solvation = -14098.600808 eV Core-core repulsion = 11738.810263 eV Total energy + Delta-G solvation = -2359.790545 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.96926 -37.65347 -35.97642 -34.11106 -31.36991 -28.77383 -28.40140 -26.71083 -26.14037 -23.20213 -20.52473 -19.32479 -18.71575 -17.13732 -16.81482 -16.43029 -15.81253 -15.57497 -15.11328 -14.72903 -14.28990 -13.83074 -13.82157 -13.40295 -13.18286 -12.99938 -12.79025 -12.60332 -12.54397 -12.27971 -12.23727 -11.91181 -11.53997 -11.15974 -10.67395 -10.13284 -9.77724 -9.47030 -8.26371 -6.44688 1.24792 1.42168 1.44145 1.54891 2.36862 2.94581 3.32984 3.79538 4.02773 4.13813 4.17669 4.29346 4.41483 4.46421 4.56139 4.65648 4.73251 4.81555 4.87949 4.94785 4.98230 5.11620 5.12233 5.15509 5.37240 5.49711 5.73812 5.78442 5.94742 6.04240 6.34104 6.61627 7.28641 7.54383 8.79191 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.058810 B = 0.006621 C = 0.006528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.995472 B = 4228.058282 C = 4288.359408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.168 4.168 5 C 0.043 3.957 6 N -0.473 5.473 7 C 0.012 3.988 8 C 0.218 3.782 9 O -0.584 6.584 10 C -0.558 4.558 11 H 0.068 0.932 12 C 0.025 3.975 13 N -0.922 5.922 14 Si 0.972 3.028 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.267 1.267 18 C -0.010 4.010 19 H 0.065 0.935 20 H 0.081 0.919 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.384 0.616 31 H 0.275 0.725 32 H 0.060 0.940 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 9.635 -5.568 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.130 4.130 3 C -0.169 4.169 4 C -0.187 4.187 5 C -0.085 4.085 6 N -0.195 5.195 7 C -0.116 4.116 8 C 0.177 3.823 9 O -0.396 6.396 10 C -0.596 4.596 11 H 0.086 0.914 12 C -0.175 4.175 13 N -0.563 5.563 14 Si 0.796 3.204 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.192 1.192 18 C -0.140 4.140 19 H 0.083 0.917 20 H 0.100 0.900 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.238 0.762 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.546 10.510 -4.939 12.869 hybrid contribution 0.743 -1.829 -0.952 2.192 sum -4.803 8.681 -5.891 11.538 Atomic orbital electron populations 1.20867 0.91283 1.03073 1.02249 1.21891 0.96846 0.95046 0.99228 1.20845 0.98997 0.94131 1.02974 1.22393 0.98924 0.93620 1.03715 1.21839 0.99505 0.94381 0.92759 1.68857 1.06928 1.14297 1.29423 1.23977 0.96677 0.90560 1.00414 1.19771 0.90335 0.91608 0.80594 1.86011 1.48213 1.74826 1.30505 1.21852 1.01077 0.98315 1.38317 0.91397 1.25874 0.94270 1.02999 0.94318 1.69379 1.04947 1.38296 1.43675 0.85344 0.78370 0.78392 0.78251 1.19811 1.20485 1.19166 1.24544 0.96159 0.94102 0.99210 0.91655 0.89973 0.91743 0.92706 0.90161 0.90602 0.88957 0.93974 0.89248 0.91099 0.90310 0.76166 0.91523 0.92236 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 8.94 71.24 0.64 -1.89 16 2 C -0.13 -3.33 6.05 -16.49 -0.10 -3.43 16 3 C -0.11 -2.31 10.09 71.23 0.72 -1.59 16 4 C -0.17 -5.37 9.44 25.65 0.24 -5.12 16 5 C 0.04 1.50 4.89 85.56 0.42 1.92 16 6 N -0.47 -20.64 6.32 -932.06 -5.89 -26.53 16 7 C 0.01 0.56 7.09 83.58 0.59 1.15 16 8 C 0.22 11.48 1.57 -11.15 -0.02 11.46 16 9 O -0.58 -33.27 13.54 -148.98 -2.02 -35.29 16 10 C -0.56 -30.22 8.69 25.60 0.22 -30.00 16 11 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 12 C 0.02 1.32 5.40 84.65 0.46 1.77 16 13 N -0.92 -50.57 11.02 21.45 0.24 -50.34 16 14 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 16 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 18 C -0.01 -0.51 7.13 83.62 0.60 0.09 16 19 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 20 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 21 H 0.06 1.38 6.66 -2.38 -0.02 1.36 16 22 H 0.05 1.17 7.79 -2.39 -0.02 1.15 16 23 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.09 3.12 7.85 -2.91 -0.02 3.10 16 26 H 0.04 1.49 7.30 -2.39 -0.02 1.47 16 27 H 0.09 2.80 5.65 -2.38 -0.01 2.78 16 28 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.08 3.23 7.87 -2.39 -0.02 3.21 16 30 H 0.38 22.28 6.33 -74.05 -0.47 21.81 16 31 H 0.27 14.16 8.31 -92.72 -0.77 13.39 16 32 H 0.06 2.82 7.37 -2.39 -0.02 2.80 16 33 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -59.46 272.76 -1.26 -60.71 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.62 Total: 33.38 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 3.77 Total: -25.64 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -5.65 Total: -76.86 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -2.02 Total: -35.29 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -59.46 -1.26 -60.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306486358.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.030 kcal (2) G-P(sol) polarization free energy of solvation -59.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds