Wall clock time and date at job start Mon Mar 30 2020 03:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 119.99752 * 2 1 4 4 N 1.46902 * 109.47044 * 124.30002 * 3 2 1 5 5 C 1.46900 * 110.99746 * 300.39088 * 4 3 2 6 6 C 1.50703 * 109.47390 * 288.27877 * 5 4 3 7 7 H 1.08007 * 119.99426 * 4.85840 * 6 5 4 8 8 C 1.37874 * 120.00114 * 184.85259 * 6 5 4 9 9 N 1.31506 * 120.00122 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99797 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47312 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47287 * 120.00257 * 10 8 6 13 13 H 1.48504 * 109.46938 * 240.00460 * 10 8 6 14 14 C 1.46899 * 110.99937 * 64.34518 * 4 3 2 15 15 H 1.09004 * 115.54820 * 290.07286 * 14 4 3 16 16 C 1.52996 * 117.51578 * 144.38028 * 14 4 3 17 17 C 1.52992 * 117.49942 * 75.75020 * 14 4 3 18 18 H 1.09000 * 117.49809 * 215.02548 * 17 14 4 19 19 C 1.52994 * 117.50165 * 0.02562 * 17 14 4 20 20 O 1.42902 * 109.47444 * 181.20076 * 19 17 14 21 21 H 1.08006 * 120.00185 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.00225 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99929 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.47371 * 4.29719 * 3 2 1 25 25 H 1.09002 * 109.47337 * 244.29568 * 3 2 1 26 26 H 1.09000 * 109.47471 * 48.28280 * 5 4 3 27 27 H 1.09004 * 109.47225 * 168.28294 * 5 4 3 28 28 H 0.96997 * 120.00099 * 180.02562 * 9 8 6 29 29 H 1.09001 * 117.49881 * 145.02708 * 16 14 4 30 30 H 1.08997 * 117.50247 * 0.02562 * 16 14 4 31 31 H 1.08999 * 109.47600 * 61.19579 * 19 17 14 32 32 H 1.08997 * 109.47014 * 301.19931 * 19 17 14 33 33 H 0.96698 * 114.00043 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9842 1.3390 1.1442 5 6 2.2535 1.2080 2.4118 6 6 1.4904 2.4784 2.6854 7 1 1.4792 3.2704 1.9511 8 6 0.8063 2.6296 3.8729 9 7 0.8202 1.6654 4.7671 10 14 -0.1402 4.2040 4.2116 11 1 0.0009 5.1250 3.0552 12 1 -1.5758 3.8842 4.4167 13 1 0.4013 4.8543 5.4319 14 6 4.0153 0.2999 1.0210 15 1 3.6664 -0.7254 1.1438 16 6 5.4194 0.6339 1.5285 17 6 5.1503 0.5456 0.0250 18 1 5.5479 -0.3181 -0.5079 19 6 5.1249 1.8548 -0.7662 20 8 6.2402 1.8937 -1.6588 21 1 -0.5401 0.9353 0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3576 2.1322 0.0770 25 1 2.6311 1.3970 -0.9260 26 1 1.5565 0.3727 2.3449 27 1 2.9604 1.0274 3.2217 28 1 0.3387 1.7716 5.6024 29 1 5.9944 -0.1717 1.9851 30 1 5.5783 1.6246 1.9543 31 1 5.1818 2.6972 -0.0768 32 1 4.1993 1.9157 -1.3384 33 1 6.2880 2.6979 -2.1936 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308299177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:56 Heat of formation + Delta-G solvation = 0.139624 kcal Electronic energy + Delta-G solvation = -14251.090338 eV Core-core repulsion = 11892.376284 eV Total energy + Delta-G solvation = -2358.714055 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.57817 -36.33147 -34.65932 -32.81034 -31.22369 -27.18051 -26.63984 -24.39585 -22.06817 -20.79680 -20.00511 -18.44159 -17.15983 -16.16975 -15.58693 -15.10159 -14.54764 -14.24161 -13.94306 -13.37847 -13.05193 -12.58920 -12.21226 -12.04954 -11.19861 -11.06146 -10.76999 -10.75276 -10.55189 -10.50945 -10.34247 -10.03546 -9.53933 -9.48621 -9.03128 -8.70241 -8.40519 -7.30700 -6.00816 -4.01377 2.86782 3.30680 3.38236 3.42266 4.07718 4.41208 4.52853 4.78316 5.32525 5.35638 5.48722 5.52257 5.66340 5.69296 5.78751 5.85037 6.05760 6.13744 6.22950 6.38001 6.44379 6.61170 6.66273 7.14670 7.28160 7.31263 7.43190 7.81100 7.82013 8.11633 8.20628 8.55014 9.05288 9.61907 11.10097 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.008873 C = 0.008126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.090765 B = 3154.937031 C = 3444.821840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.177 4.177 3 C 0.088 3.912 4 N -0.503 5.503 5 C 0.193 3.807 6 C -0.501 4.501 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.026 3.974 15 H 0.077 0.923 16 C -0.159 4.159 17 C -0.149 4.149 18 H 0.102 0.898 19 C 0.112 3.888 20 O -0.582 6.582 21 H 0.097 0.903 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.064 0.936 26 H -0.001 1.001 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -1.165 -9.796 10.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.197 4.197 3 C -0.040 4.040 4 N -0.226 5.226 5 C 0.069 3.931 6 C -0.540 4.540 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.084 4.084 15 H 0.095 0.905 16 C -0.196 4.196 17 C -0.168 4.168 18 H 0.120 0.880 19 C 0.035 3.965 20 O -0.387 6.387 21 H 0.115 0.885 22 H 0.103 0.897 23 H 0.113 0.887 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.017 0.983 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.097 -1.317 -9.317 10.701 hybrid contribution -1.181 0.388 0.263 1.271 sum 3.916 -0.929 -9.053 9.908 Atomic orbital electron populations 1.23705 0.96045 1.01144 1.01133 1.23561 0.96675 0.99767 0.99709 1.21370 0.94575 0.94415 0.93628 1.62289 1.13440 1.42635 1.04235 1.19740 0.92284 0.96707 0.84399 1.21141 1.29212 1.01520 1.02098 0.92084 1.24955 0.96883 0.96596 0.96128 1.69964 1.43129 1.32420 1.08259 0.86495 0.79517 0.83497 0.78217 1.19732 1.21174 1.21075 1.22425 0.88829 0.94943 1.02195 0.90518 1.23108 0.98193 1.03248 0.95063 1.22195 1.04199 0.98600 0.91771 0.88027 1.21695 0.87368 0.96346 0.91065 1.86424 1.49862 1.45320 1.57108 0.88472 0.89674 0.88684 0.89839 0.91792 0.98349 0.95082 0.93062 0.89321 0.88114 0.92567 0.93055 0.77935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 14.32 29.02 0.42 -2.76 16 2 C -0.18 -3.20 7.47 -36.03 -0.27 -3.47 16 3 C 0.09 1.64 5.42 -4.97 -0.03 1.62 16 4 N -0.50 -10.51 4.27 -229.52 -0.98 -11.49 16 5 C 0.19 4.96 4.58 -4.97 -0.02 4.93 16 6 C -0.50 -13.86 8.67 -34.44 -0.30 -14.16 16 7 H 0.06 1.67 7.32 -52.48 -0.38 1.29 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 10 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 14 C 0.03 0.47 4.23 -67.72 -0.29 0.18 16 15 H 0.08 1.40 7.40 -51.93 -0.38 1.02 16 16 C -0.16 -2.65 10.10 -26.73 -0.27 -2.92 16 17 C -0.15 -2.37 5.97 -90.63 -0.54 -2.91 16 18 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 19 C 0.11 1.68 6.53 37.15 0.24 1.92 16 20 O -0.58 -8.00 13.66 -35.23 -0.48 -8.48 16 21 H 0.10 1.71 7.84 -52.48 -0.41 1.30 16 22 H 0.08 1.33 8.06 -52.49 -0.42 0.90 16 23 H 0.10 1.64 7.27 -52.49 -0.38 1.26 16 24 H 0.08 1.68 6.82 -51.93 -0.35 1.33 16 25 H 0.06 1.06 5.47 -51.93 -0.28 0.77 16 26 H 0.00 -0.03 6.71 -51.93 -0.35 -0.38 16 27 H 0.03 0.87 8.00 -51.93 -0.42 0.46 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.10 1.79 8.04 -51.93 -0.42 1.37 16 31 H 0.06 0.89 7.89 -51.93 -0.41 0.48 16 32 H 0.05 0.75 5.72 -51.93 -0.30 0.45 16 33 H 0.37 3.32 9.12 45.56 0.42 3.74 16 LS Contribution 275.08 15.07 4.15 4.15 Total: -1.00 -30.41 275.08 -6.83 -37.24 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.08 Total: 4.04 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -1.15 Total: -16.10 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.24 Total: -37.41 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.48 Total: -8.48 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.41 -6.83 -37.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308299177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.380 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds