Wall clock time and date at job start Mon Mar 30 2020 03:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 119.99752 * 2 1 4 4 N 1.46902 * 109.47044 * 124.30002 * 3 2 1 5 5 C 1.46900 * 110.99746 * 300.39088 * 4 3 2 6 6 C 1.50703 * 109.47390 * 288.27877 * 5 4 3 7 7 H 1.08007 * 119.99426 * 4.85840 * 6 5 4 8 8 C 1.37874 * 120.00114 * 184.85259 * 6 5 4 9 9 N 1.31506 * 120.00122 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99797 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47312 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47287 * 120.00257 * 10 8 6 13 13 H 1.48504 * 109.46938 * 240.00460 * 10 8 6 14 14 C 1.46899 * 110.99937 * 64.34518 * 4 3 2 15 15 H 1.09004 * 115.54820 * 290.07286 * 14 4 3 16 16 C 1.52996 * 117.51578 * 144.38028 * 14 4 3 17 17 C 1.52992 * 117.49942 * 75.75020 * 14 4 3 18 18 H 1.09000 * 117.49809 * 215.02548 * 17 14 4 19 19 C 1.52994 * 117.50165 * 0.02562 * 17 14 4 20 20 O 1.42902 * 109.47444 * 181.20076 * 19 17 14 21 21 H 1.08006 * 120.00185 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.00225 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99929 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.47371 * 4.29719 * 3 2 1 25 25 H 1.09002 * 109.47337 * 244.29568 * 3 2 1 26 26 H 1.09000 * 109.47471 * 48.28280 * 5 4 3 27 27 H 1.09004 * 109.47225 * 168.28294 * 5 4 3 28 28 H 0.96997 * 120.00099 * 180.02562 * 9 8 6 29 29 H 1.09001 * 117.49881 * 145.02708 * 16 14 4 30 30 H 1.08997 * 117.50247 * 0.02562 * 16 14 4 31 31 H 1.08999 * 109.47600 * 61.19579 * 19 17 14 32 32 H 1.08997 * 109.47014 * 301.19931 * 19 17 14 33 33 H 0.96698 * 114.00043 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9842 1.3390 1.1442 5 6 2.2535 1.2080 2.4118 6 6 1.4904 2.4784 2.6854 7 1 1.4792 3.2704 1.9511 8 6 0.8063 2.6296 3.8729 9 7 0.8202 1.6654 4.7671 10 14 -0.1402 4.2040 4.2116 11 1 0.0009 5.1250 3.0552 12 1 -1.5758 3.8842 4.4167 13 1 0.4013 4.8543 5.4319 14 6 4.0153 0.2999 1.0210 15 1 3.6664 -0.7254 1.1438 16 6 5.4194 0.6339 1.5285 17 6 5.1503 0.5456 0.0250 18 1 5.5479 -0.3181 -0.5079 19 6 5.1249 1.8548 -0.7662 20 8 6.2402 1.8937 -1.6588 21 1 -0.5401 0.9353 0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3576 2.1322 0.0770 25 1 2.6311 1.3970 -0.9260 26 1 1.5565 0.3727 2.3449 27 1 2.9604 1.0274 3.2217 28 1 0.3387 1.7716 5.6024 29 1 5.9944 -0.1717 1.9851 30 1 5.5783 1.6246 1.9543 31 1 5.1818 2.6972 -0.0768 32 1 4.1993 1.9157 -1.3384 33 1 6.2880 2.6979 -2.1936 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308299177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:56 Heat of formation + Delta-G solvation = -21.724707 kcal Electronic energy + Delta-G solvation = -14252.038447 eV Core-core repulsion = 11892.376284 eV Total energy + Delta-G solvation = -2359.662163 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.02432 -37.59891 -36.04200 -34.80660 -32.89339 -29.03716 -28.03196 -26.04401 -23.85914 -22.28370 -21.38109 -19.90992 -18.41314 -18.18716 -17.00769 -16.75475 -16.14044 -15.75782 -15.46855 -14.85970 -14.46116 -14.25677 -13.96284 -13.46000 -13.03824 -12.85428 -12.57312 -12.28447 -12.14751 -12.02656 -11.86997 -11.63921 -11.26337 -10.94041 -10.61573 -10.50583 -10.11857 -8.99831 -8.16460 -6.24929 1.40425 1.41690 1.45063 1.54319 2.41190 2.77010 3.14829 3.23247 3.38076 3.99956 4.07942 4.18323 4.31961 4.39910 4.45178 4.53895 4.62687 4.83653 4.91624 4.99148 5.07242 5.12112 5.29487 5.32753 5.37220 5.69070 5.73515 5.90061 6.12409 6.39900 6.67102 6.90444 6.95346 7.43637 8.94594 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.008873 C = 0.008126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.090765 B = 3154.937031 C = 3444.821840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.189 4.189 3 C 0.089 3.911 4 N -0.506 5.506 5 C 0.213 3.787 6 C -0.512 4.512 7 H 0.060 0.940 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.963 3.037 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.003 3.997 15 H 0.076 0.924 16 C -0.161 4.161 17 C -0.126 4.126 18 H 0.118 0.882 19 C 0.117 3.883 20 O -0.589 6.589 21 H 0.092 0.908 22 H 0.104 0.896 23 H 0.104 0.896 24 H 0.065 0.935 25 H 0.090 0.910 26 H -0.024 1.024 27 H -0.002 1.002 28 H 0.262 0.738 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 -0.677 -11.025 12.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.208 4.208 3 C -0.038 4.038 4 N -0.228 5.228 5 C 0.087 3.913 6 C -0.551 4.551 7 H 0.079 0.921 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.788 3.212 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.207 1.207 14 C -0.106 4.106 15 H 0.094 0.906 16 C -0.199 4.199 17 C -0.145 4.145 18 H 0.136 0.864 19 C 0.040 3.960 20 O -0.398 6.398 21 H 0.110 0.890 22 H 0.122 0.878 23 H 0.122 0.878 24 H 0.084 0.916 25 H 0.108 0.892 26 H -0.007 1.007 27 H 0.016 0.984 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.346 -0.814 -10.584 11.885 hybrid contribution -1.202 0.214 0.590 1.356 sum 4.144 -0.599 -9.993 10.835 Atomic orbital electron populations 1.23878 0.96061 1.01876 1.00215 1.23593 0.96993 0.99716 1.00516 1.21367 0.94407 0.94263 0.93725 1.62135 1.13691 1.44061 1.02936 1.19309 0.91052 0.95111 0.85859 1.21444 1.29328 1.02125 1.02190 0.92142 1.25827 0.97856 0.99910 0.95943 1.70089 1.44153 1.34535 1.08783 0.85426 0.78047 0.79466 0.78235 1.18679 1.20603 1.20704 1.22446 0.88725 0.94175 1.05237 0.90615 1.23180 0.97281 1.03182 0.96253 1.22254 1.01253 0.99665 0.91324 0.86433 1.21543 0.88119 0.95261 0.91108 1.86368 1.49141 1.47096 1.57160 0.89005 0.87755 0.87793 0.91635 0.89182 1.00680 0.98425 0.92911 0.87442 0.89504 0.93753 0.92474 0.75371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.21 14.32 67.78 0.97 -5.24 16 2 C -0.19 -6.66 7.47 25.65 0.19 -6.47 16 3 C 0.09 3.30 5.42 85.56 0.46 3.76 16 4 N -0.51 -21.15 4.27 -880.06 -3.76 -24.90 16 5 C 0.21 11.17 4.58 85.56 0.39 11.56 16 6 C -0.51 -28.67 8.67 25.60 0.22 -28.45 16 7 H 0.06 3.32 7.32 -2.91 -0.02 3.30 16 8 C 0.00 0.13 5.46 84.66 0.46 0.59 16 9 N -0.93 -56.32 13.29 21.44 0.28 -56.03 16 10 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 11 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 14 C 0.00 0.12 4.23 44.91 0.19 0.31 16 15 H 0.08 2.74 7.40 -2.38 -0.02 2.72 16 16 C -0.16 -5.26 10.10 30.59 0.31 -4.95 16 17 C -0.13 -3.76 5.97 -10.80 -0.06 -3.82 16 18 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 19 C 0.12 3.25 6.53 71.98 0.47 3.72 16 20 O -0.59 -14.50 13.66 -148.98 -2.04 -16.53 16 21 H 0.09 3.20 7.84 -2.91 -0.02 3.17 16 22 H 0.10 3.11 8.06 -2.91 -0.02 3.08 16 23 H 0.10 3.47 7.27 -2.91 -0.02 3.45 16 24 H 0.07 2.63 6.82 -2.39 -0.02 2.61 16 25 H 0.09 2.82 5.47 -2.39 -0.01 2.80 16 26 H -0.02 -1.38 6.71 -2.39 -0.02 -1.39 16 27 H 0.00 -0.14 8.00 -2.39 -0.02 -0.16 16 28 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.09 3.07 8.04 -2.39 -0.02 3.05 16 31 H 0.04 1.34 7.89 -2.39 -0.02 1.32 16 32 H 0.06 1.52 5.72 -2.39 -0.01 1.51 16 33 H 0.40 5.86 9.12 -74.06 -0.68 5.18 16 Total: -1.00 -64.47 275.08 0.54 -63.93 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.41 Total: 16.25 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 3.61 Total: -28.99 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -3.47 Total: -80.94 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -2.04 Total: -16.53 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -64.47 0.54 -63.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308299177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.210 kcal (2) G-P(sol) polarization free energy of solvation -64.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds