Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 119.99860 * 2 1 4 4 N 1.46899 * 109.47206 * 124.13319 * 3 2 1 5 5 C 1.46897 * 110.99935 * 64.84169 * 4 3 2 6 6 C 1.50705 * 109.46871 * 66.04942 * 5 4 3 7 7 H 1.08001 * 120.00325 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99798 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00314 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99805 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.46900 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47055 * 239.99798 * 10 8 6 13 13 H 1.48506 * 109.46927 * 119.99901 * 10 8 6 14 14 C 1.46899 * 110.99838 * 300.89282 * 4 3 2 15 15 H 1.09003 * 115.55467 * 79.35767 * 14 4 3 16 16 C 1.52998 * 117.49949 * 225.03036 * 14 4 3 17 17 C 1.52997 * 117.49950 * 293.68770 * 14 4 3 18 18 H 1.09000 * 117.49763 * 0.02562 * 17 14 4 19 19 C 1.53001 * 117.50098 * 145.02388 * 17 14 4 20 20 O 1.42908 * 109.47064 * 185.00150 * 19 17 14 21 21 H 1.08005 * 120.00032 * 179.97438 * 1 2 3 22 22 H 1.08006 * 120.00004 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00223 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.47104 * 4.13143 * 3 2 1 25 25 H 1.08996 * 109.47179 * 244.13170 * 3 2 1 26 26 H 1.08997 * 109.47650 * 306.04947 * 5 4 3 27 27 H 1.09002 * 109.47357 * 186.04782 * 5 4 3 28 28 H 0.97002 * 119.99691 * 359.97438 * 9 8 6 29 29 H 1.09004 * 117.50355 * 214.98122 * 16 14 4 30 30 H 1.09004 * 117.49623 * 359.97438 * 16 14 4 31 31 H 1.09002 * 109.46933 * 304.99404 * 19 17 14 32 32 H 1.08996 * 109.47448 * 64.99712 * 19 17 14 33 33 H 0.96703 * 113.99594 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9813 1.3407 1.1464 5 6 4.0197 0.3091 1.0215 6 6 4.9046 0.6271 -0.1562 7 1 4.7143 1.5072 -0.7525 8 6 5.9570 -0.2055 -0.4723 9 7 6.1885 -1.2776 0.2535 10 14 7.0535 0.1882 -1.9326 11 1 6.5847 1.4396 -2.5802 12 1 6.9952 -0.9278 -2.9105 13 1 8.4525 0.3663 -1.4674 14 6 2.2487 1.1997 2.4118 15 1 1.9570 0.1830 2.6755 16 6 2.6234 2.1458 3.5543 17 6 1.2997 2.3322 2.8087 18 1 1.2186 3.1817 2.1306 19 6 0.0142 1.9512 3.5458 20 8 -0.7933 3.1160 3.7283 21 1 -0.5400 -0.9354 -0.0004 22 1 -0.5400 0.9354 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3575 2.1322 0.0740 25 1 2.6334 1.3956 -0.9247 26 1 3.5501 -0.6629 0.8711 27 1 4.6199 0.2858 1.9311 28 1 5.6189 -1.4822 1.0115 29 1 2.5780 1.7519 4.5696 30 1 3.4139 2.8727 3.3670 31 1 -0.5365 1.2157 2.9593 32 1 0.2649 1.5268 4.5179 33 1 -1.6265 2.9485 4.1898 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308299180.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = -5.582310 kcal Electronic energy + Delta-G solvation = -14146.574299 eV Core-core repulsion = 11787.612123 eV Total energy + Delta-G solvation = -2358.962176 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.61209 -36.66551 -34.74896 -33.18175 -31.41892 -26.78084 -26.49387 -24.55961 -22.26910 -20.65768 -20.34418 -18.81352 -17.28878 -16.59772 -15.93209 -14.75544 -14.63687 -14.39840 -13.73551 -13.56742 -13.42243 -12.89612 -12.31022 -11.74593 -11.27821 -11.18281 -11.03178 -10.83867 -10.65971 -10.52113 -10.41624 -10.11392 -9.75543 -9.49598 -9.00731 -8.62324 -8.37564 -7.38001 -6.37283 -4.06004 2.67779 3.44769 3.48545 3.62451 3.92169 4.23477 4.52635 4.80814 5.13831 5.30797 5.38390 5.39466 5.42992 5.48672 5.59619 5.78473 5.82922 5.96980 6.06637 6.30804 6.37672 6.53938 6.58376 6.95203 7.00551 7.09022 7.19562 7.58794 7.81458 7.95316 8.30959 8.58449 8.86606 9.64387 11.02001 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.042238 B = 0.007640 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.756346 B = 3664.225603 C = 3966.688867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C 0.089 3.911 4 N -0.496 5.496 5 C 0.183 3.817 6 C -0.587 4.587 7 H 0.058 0.942 8 C 0.014 3.986 9 N -0.916 5.916 10 Si 1.077 2.923 11 H -0.288 1.288 12 H -0.288 1.288 13 H -0.287 1.287 14 C 0.029 3.971 15 H 0.075 0.925 16 C -0.159 4.159 17 C -0.149 4.149 18 H 0.112 0.888 19 C 0.108 3.892 20 O -0.572 6.572 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.107 0.893 24 H 0.061 0.939 25 H 0.093 0.907 26 H -0.013 1.013 27 H 0.021 0.979 28 H 0.267 0.733 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.841 4.034 4.482 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.179 4.179 3 C -0.039 4.039 4 N -0.219 5.219 5 C 0.058 3.942 6 C -0.626 4.626 7 H 0.076 0.924 8 C -0.189 4.189 9 N -0.552 5.552 10 Si 0.905 3.095 11 H -0.214 1.214 12 H -0.215 1.215 13 H -0.214 1.214 14 C -0.080 4.080 15 H 0.093 0.907 16 C -0.197 4.197 17 C -0.168 4.168 18 H 0.130 0.870 19 C 0.031 3.969 20 O -0.377 6.377 21 H 0.105 0.895 22 H 0.109 0.891 23 H 0.125 0.875 24 H 0.079 0.921 25 H 0.112 0.888 26 H 0.004 0.996 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.747 4.257 3.313 11.140 hybrid contribution -2.180 -0.733 1.214 2.600 sum -11.926 3.524 4.526 13.234 Atomic orbital electron populations 1.23651 0.95872 1.00785 1.04621 1.23865 0.96258 1.01211 0.96592 1.21274 0.94035 0.92537 0.96015 1.62180 1.10992 1.50515 0.98196 1.19846 0.88886 0.87707 0.97795 1.22010 1.14848 1.12023 1.13675 0.92399 1.25831 0.97375 0.93520 1.02178 1.70740 1.40372 1.25869 1.18264 0.83433 0.75758 0.75366 0.74923 1.21426 1.21466 1.21351 1.22413 0.99189 0.92883 0.93548 0.90699 1.23203 0.97832 1.03104 0.95578 1.22211 0.89470 1.01977 1.03135 0.86996 1.21712 0.90703 0.86675 0.97830 1.86499 1.35056 1.34656 1.81456 0.89506 0.89114 0.87455 0.92076 0.88850 0.99583 0.96150 0.92290 0.89356 0.88076 0.93428 0.93763 0.77867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.22 14.32 29.02 0.42 -2.81 16 2 C -0.16 -2.92 8.09 -36.02 -0.29 -3.21 16 3 C 0.09 1.76 5.54 -4.98 -0.03 1.73 16 4 N -0.50 -10.79 4.83 -229.53 -1.11 -11.90 16 5 C 0.18 4.70 3.88 -4.98 -0.02 4.68 16 6 C -0.59 -16.53 8.45 -34.44 -0.29 -16.82 16 7 H 0.06 1.64 7.13 -52.49 -0.37 1.27 16 8 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 9 N -0.92 -27.83 13.65 55.43 0.76 -27.07 16 10 Si 1.08 25.45 29.90 -169.99 -5.08 20.37 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 14 C 0.03 0.54 3.93 -67.72 -0.27 0.27 16 15 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 16 C -0.16 -2.62 10.11 -26.70 -0.27 -2.89 16 17 C -0.15 -2.37 5.44 -90.59 -0.49 -2.86 16 18 H 0.11 1.93 7.91 -51.93 -0.41 1.52 16 19 C 0.11 1.40 7.33 37.16 0.27 1.67 16 20 O -0.57 -7.13 13.66 -35.23 -0.48 -7.61 16 21 H 0.09 1.19 8.06 -52.48 -0.42 0.77 16 22 H 0.09 1.29 7.84 -52.48 -0.41 0.88 16 23 H 0.11 2.18 6.82 -52.49 -0.36 1.82 16 24 H 0.06 1.10 7.21 -51.93 -0.37 0.73 16 25 H 0.09 2.02 6.74 -51.93 -0.35 1.67 16 26 H -0.01 -0.36 6.24 -51.93 -0.32 -0.68 16 27 H 0.02 0.56 7.94 -51.93 -0.41 0.15 16 28 H 0.27 8.09 7.22 -40.82 -0.29 7.79 16 29 H 0.09 1.26 8.03 -51.93 -0.42 0.85 16 30 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.51 7.88 -51.93 -0.41 0.10 16 33 H 0.38 2.69 9.12 45.56 0.42 3.11 16 LS Contribution 278.36 15.07 4.19 4.19 Total: -1.00 -31.15 278.36 -6.99 -38.14 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.20 Total: 3.80 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -1.07 Total: -19.93 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.35 Total: -38.97 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.48 Total: -7.61 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.15 -6.99 -38.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308299180.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.562 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds